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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE ANTI-HIV-1 ANTIBODY 2.2C
Keywords IGG, FAB, HIV, IMMUNOGLOBULIN DOMAIN, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4R4B     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FAB 2.2C LIGHT CHAIN  L 210 1612 0
2  Protein   FAB 2.2C HEAVY CHAIN  H 220 1671 0
3  Protein   FAB 2.2C LIGHT CHAIN  A 210 1612 0
4  Protein   FAB 2.2C HEAVY CHAIN  B 220 1671 0
5  Protein   FAB 2.2C LIGHT CHAIN  C 204 1573 0
6  Protein   FAB 2.2C HEAVY CHAIN  D 220 1671 0
7  Protein   FAB 2.2C LIGHT CHAIN  E 204 1573 0
8  Protein   FAB 2.2C HEAVY CHAIN  F 220 1671 0
9  Ligand   FAB 2.2C LIGHT CHAIN  L 6 0 30
10  Ligand   FAB 2.2C HEAVY CHAIN  H 6 0 39
11  Ligand   FAB 2.2C LIGHT CHAIN  A 5 0 25
12  Ligand   FAB 2.2C HEAVY CHAIN  B 9 0 54
13  Ligand   FAB 2.2C LIGHT CHAIN  C 3 0 15
14  Ligand   FAB 2.2C HEAVY CHAIN  D 2 0 19
15  Ligand   FAB 2.2C LIGHT CHAIN  E 2 0 10
16  Ligand   FAB 2.2C HEAVY CHAIN  F 7 0 44
17 Water     1233 0 1233
total       2981 13054 1469

Proteins
Unit 1 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 PHE10 VAL11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 VAL47 ILE48 TYR49 ALA50 ALA51 SER52 THR53 LEU54 GLN55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 LEU91 ILE92 GLY93 LEU94 ARG96 SER97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 2 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 TRP7 GLY8 ALA9 GLY10 LEU11 LEU12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 GLY23 VAL24 TYR25 GLY26 GLU27 SER28 LEU29 SER30 GLY31 HIS32 TYR33 TRP34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 ARG44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 LYS52 HIS53 ASN54 GLY55 SER56 PRO57 ASN58 TYR59 HIS60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 LEU71 ASP72 MET73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 ASN81 LEU82 THR82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 ARG94 ARG95 SER96 ASN97 TRP98 PRO99 TYR100 LEU100A PRO100B PHE100C ASP101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214
Unit 3 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 PHE10 VAL11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 VAL47 ILE48 TYR49 ALA50 ALA51 SER52 THR53 LEU54 GLN55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 LEU91 ILE92 GLY93 LEU94 ARG96 SER97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 4 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 TRP7 GLY8 ALA9 GLY10 LEU11 LEU12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 GLY23 VAL24 TYR25 GLY26 GLU27 SER28 LEU29 SER30 GLY31 HIS32 TYR33 TRP34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 ARG44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 LYS52 HIS53 ASN54 GLY55 SER56 PRO57 ASN58 TYR59 HIS60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 LEU71 ASP72 MET73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 ASN81 LEU82 THR82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 ARG94 ARG95 SER96 ASN97 TRP98 PRO99 TYR100 LEU100A PRO100B PHE100C ASP101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214
Unit 5 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 PHE10 VAL11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 VAL47 ILE48 TYR49 ALA50 ALA51 SER52 THR53 LEU54 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 LEU91 ILE92 GLY93 LEU94 ARG96 SER97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 6 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 TRP7 GLY8 ALA9 GLY10 LEU11 LEU12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 GLY23 VAL24 TYR25 GLY26 GLU27 SER28 LEU29 SER30 GLY31 HIS32 TYR33 TRP34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 ARG44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 LYS52 HIS53 ASN54 GLY55 SER56 PRO57 ASN58 TYR59 HIS60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 LEU71 ASP72 MET73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 ASN81 LEU82 THR82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 ARG94 ARG95 SER96 ASN97 TRP98 PRO99 TYR100 LEU100A PRO100B PHE100C ASP101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214
Unit 7 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 PHE10 VAL11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 VAL47 ILE48 TYR49 ALA50 ALA51 SER52 THR53 LEU54 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 LEU91 ILE92 GLY93 LEU94 ARG96 SER97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 8 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 TRP7 GLY8 ALA9 GLY10 LEU11 LEU12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 GLY23 VAL24 TYR25 GLY26 GLU27 SER28 LEU29 SER30 GLY31 HIS32 TYR33 TRP34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 ARG44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 LYS52 HIS53 ASN54 GLY55 SER56 PRO57 ASN58 TYR59 HIS60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 LEU71 ASP72 MET73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 ASN81 LEU82 THR82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 ARG94 ARG95 SER96 ASN97 TRP98 PRO99 TYR100 LEU100A PRO100B PHE100C ASP101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214

Ligands
Unit 9 SO4301 SO4302 SO4303 SO4304 SO4305 SO4306
Unit 10 NAG301 SO4302 SO4303 SO4304 SO4305 SO4306
Unit 11 SO4301 SO4302 SO4303 SO4304 SO4305
Unit 12 NAG301 SO4302 SO4303 SO4304 SO4305 SO4306 SO4307 SO4308 SO4309
Unit 13 SO4301 SO4302 SO4303
Unit 14 NAG301 SO4302
Unit 15 SO4301 SO4302
Unit 16 NAG301 SO4302 SO4303 SO4304 SO4305 SO4306 SO4307

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany