4R2X - Sequence, Chains, Asymmetric and Biological Units

• Title: UNIQUE CONFORMATION OF URIDINE AND ASYMMETRY OF THE HEXAMERI REVEALED IN THE HIGH-RESOLUTION STRUCTURES OF SHEWANELLA ON URIDINE PHOSPHORYLASE IN THE FREE FORM AND IN COMPLEX WITH
• Keywords: URIDINE PHOSPHORYLASE, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4R2X	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	URIDINE PHOSPHORYLASE	C	247	3604	0
2	Protein	URIDINE PHOSPHORYLASE	D	249	3612	0
3	Protein	URIDINE PHOSPHORYLASE	E	241	3477	0
4	Protein	URIDINE PHOSPHORYLASE	F	242	3516	0
5	Protein	URIDINE PHOSPHORYLASE	A	241	3499	0
6	Protein	URIDINE PHOSPHORYLASE	B	240	3462	0
7	Ligand	URIDINE PHOSPHORYLASE	C	6	0	46
8	Ligand	URIDINE PHOSPHORYLASE	D	5	0	42
9	Ligand	URIDINE PHOSPHORYLASE	E	5	0	46
10	Ligand	URIDINE PHOSPHORYLASE	F	5	0	42
11	Ligand	URIDINE PHOSPHORYLASE	A	5	0	40
12	Ligand	URIDINE PHOSPHORYLASE	B	5	0	46
13	Water			1092	0	1092
total				2583	21170	1354

Proteins

Unit 1	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 GLN 223 GLU 224 ILE 225 PRO 226 ASP 227 GLU 228 ALA 229 THR 230 MET 231 VAL 236 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251
Unit 2	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 GLN 223 GLU 224 ILE 225 PRO 226 ASP 227 GLU 228 ALA 229 THR 230 MET 231 LYS 232 GLU 235 VAL 236 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251
Unit 3	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 LYS 233 THR 234 GLU 235 VAL 236 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251
Unit 4	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 GLN 223 GLU 224 ILE 225 PRO 226 VAL 236 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251
Unit 5	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 GLN 223 GLU 224 ILE 225 PRO 226 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251
Unit 6	ALA 1 ASP 2 VAL 3 PHE 4 HIS 5 LEU 6 GLY 7 LEU 8 THR 9 LYS 10 ALA 11 MET 12 LEU 13 ASP 14 GLY 15 ALA 16 THR 17 LEU 18 ALA 19 ILE 20 VAL 21 PRO 22 GLY 23 ASP 24 PRO 25 GLU 26 ARG 27 VAL 28 LYS 29 ARG 30 ILE 31 ALA 32 GLU 33 LEU 34 MET 35 ASP 36 ASN 37 ALA 38 THR 39 PHE 40 LEU 41 ALA 42 SER 43 HIS 44 ARG 45 GLU 46 TYR 47 THR 48 SER 49 TYR 50 LEU 51 ALA 52 TYR 53 ALA 54 ASP 55 GLY 56 LYS 57 PRO 58 VAL 59 VAL 60 ILE 61 CYS 62 SER 63 THR 64 GLY 65 ILE 66 GLY 67 GLY 68 PRO 69 SER 70 THR 71 SER 72 ILE 73 ALA 74 VAL 75 GLU 76 GLU 77 LEU 78 ALA 79 GLN 80 LEU 81 GLY 82 VAL 83 ASN 84 THR 85 PHE 86 LEU 87 ARG 88 VAL 89 GLY 90 THR 91 THR 92 GLY 93 ALA 94 ILE 95 GLN 96 PRO 97 HIS 98 VAL 99 ASN 100 VAL 101 GLY 102 ASP 103 VAL 104 ILE 105 VAL 106 THR 107 GLN 108 ALA 109 SER 110 VAL 111 ARG 112 LEU 113 ASP 114 GLY 115 ALA 116 SER 117 LEU 118 HIS 119 PHE 120 ALA 121 PRO 122 MET 123 GLU 124 PHE 125 PRO 126 ALA 127 VAL 128 ALA 129 ASN 130 PHE 131 GLU 132 CYS 133 THR 134 THR 135 ALA 136 MET 137 VAL 138 ALA 139 ALA 140 CYS 141 ARG 142 ASP 143 ALA 144 GLY 145 VAL 146 GLU 147 PRO 148 HIS 149 ILE 150 GLY 151 VAL 152 THR 153 ALA 154 SER 155 SER 156 ASP 157 THR 158 PHE 159 TYR 160 PRO 161 GLY 162 GLN 163 GLU 164 ARG 165 TYR 166 ASP 167 THR 168 VAL 169 THR 170 GLY 171 ARG 172 VAL 173 THR 174 ARG 175 ARG 176 PHE 177 ALA 178 GLY 179 SER 180 MET 181 LYS 182 GLU 183 TRP 184 GLN 185 ASP 186 MET 187 GLY 188 VAL 189 LEU 190 ASN 191 TYR 192 GLU 193 MET 194 GLU 195 SER 196 ALA 197 THR 198 LEU 199 PHE 200 THR 201 MET 202 CYS 203 ALA 204 THR 205 GLN 206 GLY 207 TRP 208 ARG 209 ALA 210 ALA 211 CYS 212 VAL 213 ALA 214 GLY 215 VAL 216 ILE 217 VAL 218 ASN 219 ARG 220 THR 221 GLN 222 THR 234 GLU 235 VAL 236 SER 237 ALA 238 VAL 239 SER 240 ILE 241 VAL 242 VAL 243 ALA 244 ALA 245 ALA 246 LYS 247 LYS 248 LEU 249 LEU 250 ALA 251

Ligands

Unit 7	SO4 301 CL 302 GOL 303 GOL 304 GOL 305 GOL 306
Unit 8	SO4 301 CL 302 GOL 303 GOL 304 GOL 305
Unit 9	SO4 301 GOL 302 SO4 303 GOL 304 GOL 305
Unit 10	SO4 301 CL 302 GOL 303 GOL 304 GOL 305
Unit 11	SO4 301 CL 302 GOL 303 GOL 304 GOL 305
Unit 12	SO4 301 GOL 302 GOL 303 SO4 304 GOL 305