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Title | COMPUTATIONAL DESIGN OF CO-ASSEMBLING PROTEIN-DNA NANOWIRES | |
Keywords | HELIX-TURN-HELIX, DNA-BINDING PROTEIN, DOUBLE-STRANDED DNA, DESIGN-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4QTR | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | DUALENH | A | 55 | 386 | 0 |
2 | Protein | DUALENH | B | 54 | 413 | 0 |
3 | Protein | DUALENH | C | 57 | 425 | 0 |
4 | Protein | DUALENH | D | 55 | 386 | 0 |
5 | Other macromolecule | DNA (5'- D(P*GP*TP*GP*TP*AP*AP*TP*TP*TP*AP*AP*TP*TP*TP*CP*C)-3') | E | 15 | 307 | 0 |
6 | Other macromolecule | DNA (5'- D(P*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*TP*TP*AP*CP*A)-3') | F | 16 | 330 | 0 |
7 | Other macromolecule | DNA (5'- D(P*GP*TP*GP*TP*AP*AP*TP*TP*TP*AP*AP*TP*TP*TP*CP*C)-3') | G | 16 | 326 | 0 |
8 | Other macromolecule | DNA (5'- D(P*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*TP*TP*AP*CP*A)-3') | H | 16 | 330 | 0 |
total | 284 | 2903 | 0 |
Unit 1 | ARG5 THR6 ALA7 PHE8 SER9 GLU10 GLU11 GLN12 LYS13 LYS14 ALA15 LEU16 ASP17 LEU18 ALA19 PHE20 TYR21 PHE22 ASP23 ARG24 TYR25 LEU26 THR27 PRO28 GLU29 TRP30 ARG31 ARG32 TYR33 LEU34 SER35 GLN36 ARG37 LEU38 GLY39 LEU40 ASN41 GLU42 ALA43 GLN44 ILE45 LYS46 ILE47 TRP48 PHE49 GLN50 ASN51 LYS52 ARG53 ALA54 LYS55 ILE56 LYS57 LYS58 SER59 |
Unit 2 | THR6 ALA7 PHE8 SER9 GLU10 GLU11 GLN12 LYS13 LYS14 ALA15 LEU16 ASP17 LEU18 ALA19 PHE20 TYR21 PHE22 ASP23 ARG24 TYR25 LEU26 THR27 PRO28 GLU29 TRP30 ARG31 ARG32 TYR33 LEU34 SER35 GLN36 ARG37 LEU38 GLY39 LEU40 ASN41 GLU42 ALA43 GLN44 ILE45 LYS46 ILE47 TRP48 PHE49 GLN50 ASN51 LYS52 ARG53 ALA54 LYS55 ILE56 LYS57 LYS58 SER59 |
Unit 3 | ARG5 THR6 ALA7 PHE8 SER9 GLU10 GLU11 GLN12 LYS13 LYS14 ALA15 LEU16 ASP17 LEU18 ALA19 PHE20 TYR21 PHE22 ASP23 ARG24 TYR25 LEU26 THR27 PRO28 GLU29 TRP30 ARG31 ARG32 TYR33 LEU34 SER35 GLN36 ARG37 LEU38 GLY39 LEU40 ASN41 GLU42 ALA43 GLN44 ILE45 LYS46 ILE47 TRP48 PHE49 GLN50 ASN51 LYS52 ARG53 ALA54 LYS55 ILE56 LYS57 LYS58 SER59 THR60 GLY61 |
Unit 4 | ARG5 THR6 ALA7 PHE8 SER9 GLU10 GLU11 GLN12 LYS13 LYS14 ALA15 LEU16 ASP17 LEU18 ALA19 PHE20 TYR21 PHE22 ASP23 ARG24 TYR25 LEU26 THR27 PRO28 GLU29 TRP30 ARG31 ARG32 TYR33 LEU34 SER35 GLN36 ARG37 LEU38 GLY39 LEU40 ASN41 GLU42 ALA43 GLN44 ILE45 LYS46 ILE47 TRP48 PHE49 GLN50 ASN51 LYS52 ARG53 ALA54 LYS55 ILE56 LYS57 LYS58 SER59 |
Unit 5 | DG1 DT2 DG3 DT4 DA5 DA6 DT7 DT8 DT9 DA10 DA11 DT12 DT13 DT14 DC15 |
Unit 6 | DC1 DG2 DG3 DA4 DA5 DA6 DT7 DT8 DA9 DA10 DA11 DT12 DT13 DA14 DC15 DA16 |
Unit 7 | DG1 DT2 DG3 DT4 DA5 DA6 DT7 DT8 DT9 DA10 DA11 DT12 DT13 DT14 DC15 DC16 |
Unit 8 | DC1 DG2 DG3 DA4 DA5 DA6 DT7 DT8 DA9 DA10 DA11 DT12 DT13 DA14 DC15 DA16 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |