4QRN - Sequence, Chains, Asymmetric and Biological Units

• Title: HIGH-RESOLUTION CRYSTAL STRUCTURE OF 5-CARBOXYVANILLATE DECA (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DS COMPLEXED WITH MANGANESE AND 4-HYDROXY-3-METHOXY-5-NITROBEN
• Keywords: HYDROLASE, DECARBOXYLASE, ENZYME FUNCTION INITIATIVE, EFI, H HYDROLASE INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4QRN	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	5-CARBOXYVANILLATE DECARBOXYLASE	A	352	5566	0
2	Protein	5-CARBOXYVANILLATE DECARBOXYLASE	B	348	5507	0
3	Protein	5-CARBOXYVANILLATE DECARBOXYLASE	C	348	5488	0
4	Protein	5-CARBOXYVANILLATE DECARBOXYLASE	D	350	5522	0
5	Ligand	5-CARBOXYVANILLATE DECARBOXYLASE	A	8	0	40
6	Ligand	5-CARBOXYVANILLATE DECARBOXYLASE	B	4	0	28
7	Ligand	5-CARBOXYVANILLATE DECARBOXYLASE	C	6	0	35
8	Ligand	5-CARBOXYVANILLATE DECARBOXYLASE	D	5	0	29
9	Water			2005	0	2005
total				3426	22083	2137

Proteins

Unit 1	SER 0 MET 1 THR 2 GLN 3 ASP 4 LEU 5 LYS 6 THR 7 GLY 8 GLY 9 GLU 10 GLN 11 GLY 12 TYR 13 LEU 14 ARG 15 ILE 16 ALA 17 THR 18 GLU 19 GLU 20 ALA 21 PHE 22 ALA 23 THR 24 ARG 25 GLU 26 ILE 27 ILE 28 ASP 29 VAL 30 TYR 31 LEU 32 ARG 33 MET 34 ILE 35 ARG 36 ASP 37 GLY 38 THR 39 ALA 40 ASP 41 LYS 42 GLY 43 MET 44 VAL 45 SER 46 LEU 47 TRP 48 GLY 49 PHE 50 TYR 51 ALA 52 GLN 53 SER 54 PRO 55 SER 56 GLU 57 ARG 58 ALA 59 THR 60 GLN 61 ILE 62 LEU 63 GLU 64 ARG 65 LEU 66 LEU 67 ASP 68 LEU 69 GLY 70 GLU 71 ARG 72 ARG 73 ILE 74 ALA 75 ASP 76 MET 77 ASP 78 ALA 79 THR 80 GLY 81 ILE 82 ASP 83 LYS 84 ALA 85 ILE 86 LEU 87 ALA 88 LEU 89 THR 90 SER 91 PRO 92 GLY 93 VAL 94 GLN 95 PRO 96 LEU 97 HIS 98 ASP 99 LEU 100 ASP 101 GLU 102 ALA 103 ARG 104 THR 105 LEU 106 ALA 107 THR 108 ARG 109 ALA 110 ASN 111 ASP 112 THR 113 LEU 114 ALA 115 ASP 116 ALA 117 CYS 118 GLN 119 LYS 120 TYR 121 PRO 122 ASP 123 ARG 124 PHE 125 ILE 126 GLY 127 MET 128 GLY 129 THR 130 VAL 131 ALA 132 PRO 133 GLN 134 ASP 135 PRO 136 GLU 137 TRP 138 SER 139 ALA 140 ARG 141 GLU 142 ILE 143 HIS 144 ARG 145 GLY 146 ALA 147 ARG 148 GLU 149 LEU 150 GLY 151 PHE 152 LYS 153 GLY 154 ILE 155 GLN 156 ILE 157 ASN 158 SER 159 HIS 160 THR 161 GLN 162 GLY 163 ARG 164 TYR 165 LEU 166 ASP 167 GLU 168 GLU 169 PHE 170 PHE 171 ASP 172 PRO 173 ILE 174 PHE 175 ARG 176 ALA 177 LEU 178 VAL 179 GLU 180 VAL 181 ASP 182 GLN 183 PRO 184 LEU 185 TYR 186 ILE 187 HIS 188 PRO 189 ALA 190 THR 191 SER 192 PRO 193 ASP 194 SER 195 MET 196 ILE 197 ASP 198 PRO 199 MET 200 LEU 201 GLU 202 ALA 203 GLY 204 LEU 205 ASP 206 GLY 207 ALA 208 ILE 209 PHE 210 GLY 211 PHE 212 GLY 213 VAL 214 GLU 215 THR 216 GLY 217 MET 218 HIS 219 LEU 220 LEU 221 ARG 222 LEU 223 ILE 224 THR 225 ILE 226 GLY 227 ILE 228 PHE 229 ASP 230 LYS 231 TYR 232 PRO 233 SER 234 LEU 235 GLN 236 ILE 237 MET 238 VAL 239 GLY 240 HIS 241 MET 242 GLY 243 GLU 244 ALA 245 LEU 246 PRO 247 TYR 248 TRP 249 LEU 250 TYR 251 ARG 252 LEU 253 ASP 254 TYR 255 MET 256 HIS 257 GLN 258 ALA 259 GLY 260 VAL 261 ARG 262 SER 263 GLN 264 ARG 265 TYR 266 GLU 267 ARG 268 MET 269 LYS 270 PRO 271 LEU 272 LYS 273 LYS 274 THR 275 ILE 276 GLU 277 GLY 278 TYR 279 LEU 280 LYS 281 SER 282 ASN 283 VAL 284 LEU 285 VAL 286 THR 287 ASN 288 SER 289 GLY 290 VAL 291 ALA 292 TRP 293 GLU 294 PRO 295 ALA 296 ILE 297 LYS 298 PHE 299 CYS 300 GLN 301 GLN 302 VAL 303 MET 304 GLY 305 GLU 306 ASP 307 ARG 308 VAL 309 MET 310 TYR 311 ALA 312 MET 313 ASP 314 TYR 315 PRO 316 TYR 317 GLN 318 TYR 319 VAL 320 ALA 321 ASP 322 GLU 323 VAL 324 ARG 325 ALA 326 MET 327 ASP 328 ALA 329 MET 330 ASP 331 MET 332 SER 333 ALA 334 GLN 335 THR 336 LYS 337 LYS 338 LYS 339 PHE 340 PHE 341 GLN 342 THR 343 ASN 344 ALA 345 GLU 346 LYS 347 TRP 348 PHE 349 LYS 350 LEU 351
Unit 2	ASP 4 LEU 5 LYS 6 THR 7 GLY 8 GLY 9 GLU 10 GLN 11 GLY 12 TYR 13 LEU 14 ARG 15 ILE 16 ALA 17 THR 18 GLU 19 GLU 20 ALA 21 PHE 22 ALA 23 THR 24 ARG 25 GLU 26 ILE 27 ILE 28 ASP 29 VAL 30 TYR 31 LEU 32 ARG 33 MET 34 ILE 35 ARG 36 ASP 37 GLY 38 THR 39 ALA 40 ASP 41 LYS 42 GLY 43 MET 44 VAL 45 SER 46 LEU 47 TRP 48 GLY 49 PHE 50 TYR 51 ALA 52 GLN 53 SER 54 PRO 55 SER 56 GLU 57 ARG 58 ALA 59 THR 60 GLN 61 ILE 62 LEU 63 GLU 64 ARG 65 LEU 66 LEU 67 ASP 68 LEU 69 GLY 70 GLU 71 ARG 72 ARG 73 ILE 74 ALA 75 ASP 76 MET 77 ASP 78 ALA 79 THR 80 GLY 81 ILE 82 ASP 83 LYS 84 ALA 85 ILE 86 LEU 87 ALA 88 LEU 89 THR 90 SER 91 PRO 92 GLY 93 VAL 94 GLN 95 PRO 96 LEU 97 HIS 98 ASP 99 LEU 100 ASP 101 GLU 102 ALA 103 ARG 104 THR 105 LEU 106 ALA 107 THR 108 ARG 109 ALA 110 ASN 111 ASP 112 THR 113 LEU 114 ALA 115 ASP 116 ALA 117 CYS 118 GLN 119 LYS 120 TYR 121 PRO 122 ASP 123 ARG 124 PHE 125 ILE 126 GLY 127 MET 128 GLY 129 THR 130 VAL 131 ALA 132 PRO 133 GLN 134 ASP 135 PRO 136 GLU 137 TRP 138 SER 139 ALA 140 ARG 141 GLU 142 ILE 143 HIS 144 ARG 145 GLY 146 ALA 147 ARG 148 GLU 149 LEU 150 GLY 151 PHE 152 LYS 153 GLY 154 ILE 155 GLN 156 ILE 157 ASN 158 SER 159 HIS 160 THR 161 GLN 162 GLY 163 ARG 164 TYR 165 LEU 166 ASP 167 GLU 168 GLU 169 PHE 170 PHE 171 ASP 172 PRO 173 ILE 174 PHE 175 ARG 176 ALA 177 LEU 178 VAL 179 GLU 180 VAL 181 ASP 182 GLN 183 PRO 184 LEU 185 TYR 186 ILE 187 HIS 188 PRO 189 ALA 190 THR 191 SER 192 PRO 193 ASP 194 SER 195 MET 196 ILE 197 ASP 198 PRO 199 MET 200 LEU 201 GLU 202 ALA 203 GLY 204 LEU 205 ASP 206 GLY 207 ALA 208 ILE 209 PHE 210 GLY 211 PHE 212 GLY 213 VAL 214 GLU 215 THR 216 GLY 217 MET 218 HIS 219 LEU 220 LEU 221 ARG 222 LEU 223 ILE 224 THR 225 ILE 226 GLY 227 ILE 228 PHE 229 ASP 230 LYS 231 TYR 232 PRO 233 SER 234 LEU 235 GLN 236 ILE 237 MET 238 VAL 239 GLY 240 HIS 241 MET 242 GLY 243 GLU 244 ALA 245 LEU 246 PRO 247 TYR 248 TRP 249 LEU 250 TYR 251 ARG 252 LEU 253 ASP 254 TYR 255 MET 256 HIS 257 GLN 258 ALA 259 GLY 260 VAL 261 ARG 262 SER 263 GLN 264 ARG 265 TYR 266 GLU 267 ARG 268 MET 269 LYS 270 PRO 271 LEU 272 LYS 273 LYS 274 THR 275 ILE 276 GLU 277 GLY 278 TYR 279 LEU 280 LYS 281 SER 282 ASN 283 VAL 284 LEU 285 VAL 286 THR 287 ASN 288 SER 289 GLY 290 VAL 291 ALA 292 TRP 293 GLU 294 PRO 295 ALA 296 ILE 297 LYS 298 PHE 299 CYS 300 GLN 301 GLN 302 VAL 303 MET 304 GLY 305 GLU 306 ASP 307 ARG 308 VAL 309 MET 310 TYR 311 ALA 312 MET 313 ASP 314 TYR 315 PRO 316 TYR 317 GLN 318 TYR 319 VAL 320 ALA 321 ASP 322 GLU 323 VAL 324 ARG 325 ALA 326 MET 327 ASP 328 ALA 329 MET 330 ASP 331 MET 332 SER 333 ALA 334 GLN 335 THR 336 LYS 337 LYS 338 LYS 339 PHE 340 PHE 341 GLN 342 THR 343 ASN 344 ALA 345 GLU 346 LYS 347 TRP 348 PHE 349 LYS 350 LEU 351
Unit 3	ASP 4 LEU 5 LYS 6 THR 7 GLY 8 GLY 9 GLU 10 GLN 11 GLY 12 TYR 13 LEU 14 ARG 15 ILE 16 ALA 17 THR 18 GLU 19 GLU 20 ALA 21 PHE 22 ALA 23 THR 24 ARG 25 GLU 26 ILE 27 ILE 28 ASP 29 VAL 30 TYR 31 LEU 32 ARG 33 MET 34 ILE 35 ARG 36 ASP 37 GLY 38 THR 39 ALA 40 ASP 41 LYS 42 GLY 43 MET 44 VAL 45 SER 46 LEU 47 TRP 48 GLY 49 PHE 50 TYR 51 ALA 52 GLN 53 SER 54 PRO 55 SER 56 GLU 57 ARG 58 ALA 59 THR 60 GLN 61 ILE 62 LEU 63 GLU 64 ARG 65 LEU 66 LEU 67 ASP 68 LEU 69 GLY 70 GLU 71 ARG 72 ARG 73 ILE 74 ALA 75 ASP 76 MET 77 ASP 78 ALA 79 THR 80 GLY 81 ILE 82 ASP 83 LYS 84 ALA 85 ILE 86 LEU 87 ALA 88 LEU 89 THR 90 SER 91 PRO 92 GLY 93 VAL 94 GLN 95 PRO 96 LEU 97 HIS 98 ASP 99 LEU 100 ASP 101 GLU 102 ALA 103 ARG 104 THR 105 LEU 106 ALA 107 THR 108 ARG 109 ALA 110 ASN 111 ASP 112 THR 113 LEU 114 ALA 115 ASP 116 ALA 117 CYS 118 GLN 119 LYS 120 TYR 121 PRO 122 ASP 123 ARG 124 PHE 125 ILE 126 GLY 127 MET 128 GLY 129 THR 130 VAL 131 ALA 132 PRO 133 GLN 134 ASP 135 PRO 136 GLU 137 TRP 138 SER 139 ALA 140 ARG 141 GLU 142 ILE 143 HIS 144 ARG 145 GLY 146 ALA 147 ARG 148 GLU 149 LEU 150 GLY 151 PHE 152 LYS 153 GLY 154 ILE 155 GLN 156 ILE 157 ASN 158 SER 159 HIS 160 THR 161 GLN 162 GLY 163 ARG 164 TYR 165 LEU 166 ASP 167 GLU 168 GLU 169 PHE 170 PHE 171 ASP 172 PRO 173 ILE 174 PHE 175 ARG 176 ALA 177 LEU 178 VAL 179 GLU 180 VAL 181 ASP 182 GLN 183 PRO 184 LEU 185 TYR 186 ILE 187 HIS 188 PRO 189 ALA 190 THR 191 SER 192 PRO 193 ASP 194 SER 195 MET 196 ILE 197 ASP 198 PRO 199 MET 200 LEU 201 GLU 202 ALA 203 GLY 204 LEU 205 ASP 206 GLY 207 ALA 208 ILE 209 PHE 210 GLY 211 PHE 212 GLY 213 VAL 214 GLU 215 THR 216 GLY 217 MET 218 HIS 219 LEU 220 LEU 221 ARG 222 LEU 223 ILE 224 THR 225 ILE 226 GLY 227 ILE 228 PHE 229 ASP 230 LYS 231 TYR 232 PRO 233 SER 234 LEU 235 GLN 236 ILE 237 MET 238 VAL 239 GLY 240 HIS 241 MET 242 GLY 243 GLU 244 ALA 245 LEU 246 PRO 247 TYR 248 TRP 249 LEU 250 TYR 251 ARG 252 LEU 253 ASP 254 TYR 255 MET 256 HIS 257 GLN 258 ALA 259 GLY 260 VAL 261 ARG 262 SER 263 GLN 264 ARG 265 TYR 266 GLU 267 ARG 268 MET 269 LYS 270 PRO 271 LEU 272 LYS 273 LYS 274 THR 275 ILE 276 GLU 277 GLY 278 TYR 279 LEU 280 LYS 281 SER 282 ASN 283 VAL 284 LEU 285 VAL 286 THR 287 ASN 288 SER 289 GLY 290 VAL 291 ALA 292 TRP 293 GLU 294 PRO 295 ALA 296 ILE 297 LYS 298 PHE 299 CYS 300 GLN 301 GLN 302 VAL 303 MET 304 GLY 305 GLU 306 ASP 307 ARG 308 VAL 309 MET 310 TYR 311 ALA 312 MET 313 ASP 314 TYR 315 PRO 316 TYR 317 GLN 318 TYR 319 VAL 320 ALA 321 ASP 322 GLU 323 VAL 324 ARG 325 ALA 326 MET 327 ASP 328 ALA 329 MET 330 ASP 331 MET 332 SER 333 ALA 334 GLN 335 THR 336 LYS 337 LYS 338 LYS 339 PHE 340 PHE 341 GLN 342 THR 343 ASN 344 ALA 345 GLU 346 LYS 347 TRP 348 PHE 349 LYS 350 LEU 351
Unit 4	THR 2 GLN 3 ASP 4 LEU 5 LYS 6 THR 7 GLY 8 GLY 9 GLU 10 GLN 11 GLY 12 TYR 13 LEU 14 ARG 15 ILE 16 ALA 17 THR 18 GLU 19 GLU 20 ALA 21 PHE 22 ALA 23 THR 24 ARG 25 GLU 26 ILE 27 ILE 28 ASP 29 VAL 30 TYR 31 LEU 32 ARG 33 MET 34 ILE 35 ARG 36 ASP 37 GLY 38 THR 39 ALA 40 ASP 41 LYS 42 GLY 43 MET 44 VAL 45 SER 46 LEU 47 TRP 48 GLY 49 PHE 50 TYR 51 ALA 52 GLN 53 SER 54 PRO 55 SER 56 GLU 57 ARG 58 ALA 59 THR 60 GLN 61 ILE 62 LEU 63 GLU 64 ARG 65 LEU 66 LEU 67 ASP 68 LEU 69 GLY 70 GLU 71 ARG 72 ARG 73 ILE 74 ALA 75 ASP 76 MET 77 ASP 78 ALA 79 THR 80 GLY 81 ILE 82 ASP 83 LYS 84 ALA 85 ILE 86 LEU 87 ALA 88 LEU 89 THR 90 SER 91 PRO 92 GLY 93 VAL 94 GLN 95 PRO 96 LEU 97 HIS 98 ASP 99 LEU 100 ASP 101 GLU 102 ALA 103 ARG 104 THR 105 LEU 106 ALA 107 THR 108 ARG 109 ALA 110 ASN 111 ASP 112 THR 113 LEU 114 ALA 115 ASP 116 ALA 117 CYS 118 GLN 119 LYS 120 TYR 121 PRO 122 ASP 123 ARG 124 PHE 125 ILE 126 GLY 127 MET 128 GLY 129 THR 130 VAL 131 ALA 132 PRO 133 GLN 134 ASP 135 PRO 136 GLU 137 TRP 138 SER 139 ALA 140 ARG 141 GLU 142 ILE 143 HIS 144 ARG 145 GLY 146 ALA 147 ARG 148 GLU 149 LEU 150 GLY 151 PHE 152 LYS 153 GLY 154 ILE 155 GLN 156 ILE 157 ASN 158 SER 159 HIS 160 THR 161 GLN 162 GLY 163 ARG 164 TYR 165 LEU 166 ASP 167 GLU 168 GLU 169 PHE 170 PHE 171 ASP 172 PRO 173 ILE 174 PHE 175 ARG 176 ALA 177 LEU 178 VAL 179 GLU 180 VAL 181 ASP 182 GLN 183 PRO 184 LEU 185 TYR 186 ILE 187 HIS 188 PRO 189 ALA 190 THR 191 SER 192 PRO 193 ASP 194 SER 195 MET 196 ILE 197 ASP 198 PRO 199 MET 200 LEU 201 GLU 202 ALA 203 GLY 204 LEU 205 ASP 206 GLY 207 ALA 208 ILE 209 PHE 210 GLY 211 PHE 212 GLY 213 VAL 214 GLU 215 THR 216 GLY 217 MET 218 HIS 219 LEU 220 LEU 221 ARG 222 LEU 223 ILE 224 THR 225 ILE 226 GLY 227 ILE 228 PHE 229 ASP 230 LYS 231 TYR 232 PRO 233 SER 234 LEU 235 GLN 236 ILE 237 MET 238 VAL 239 GLY 240 HIS 241 MET 242 GLY 243 GLU 244 ALA 245 LEU 246 PRO 247 TYR 248 TRP 249 LEU 250 TYR 251 ARG 252 LEU 253 ASP 254 TYR 255 MET 256 HIS 257 GLN 258 ALA 259 GLY 260 VAL 261 ARG 262 SER 263 GLN 264 ARG 265 TYR 266 GLU 267 ARG 268 MET 269 LYS 270 PRO 271 LEU 272 LYS 273 LYS 274 THR 275 ILE 276 GLU 277 GLY 278 TYR 279 LEU 280 LYS 281 SER 282 ASN 283 VAL 284 LEU 285 VAL 286 THR 287 ASN 288 SER 289 GLY 290 VAL 291 ALA 292 TRP 293 GLU 294 PRO 295 ALA 296 ILE 297 LYS 298 PHE 299 CYS 300 GLN 301 GLN 302 VAL 303 MET 304 GLY 305 GLU 306 ASP 307 ARG 308 VAL 309 MET 310 TYR 311 ALA 312 MET 313 ASP 314 TYR 315 PRO 316 TYR 317 GLN 318 TYR 319 VAL 320 ALA 321 ASP 322 GLU 323 VAL 324 ARG 325 ALA 326 MET 327 ASP 328 ALA 329 MET 330 ASP 331 MET 332 SER 333 ALA 334 GLN 335 THR 336 LYS 337 LYS 338 LYS 339 PHE 340 PHE 341 GLN 342 THR 343 ASN 344 ALA 345 GLU 346 LYS 347 TRP 348 PHE 349 LYS 350 LEU 351

Ligands

Unit 5	MN 401 1DF 402 GOL 403 GOL 404 CL 405 CL 406 CL 407 ACT 408
Unit 6	MN 401 1DF 402 GOL 403 CL 404
Unit 7	MN 401 1DF 402 GOL 403 GOL 404 CL 405 CL 406
Unit 8	MN 401 1DF 402 GOL 403 CL 404 CL 405