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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE ISOTYPE 1 TRANSFERRIN BINDING PROTE (TBPB) FROM SEROGROUP B NEISSERIA MENINGITIDIS
Keywords VACCINE CANDIDATE, TRANSFERRIN RECEPTOR, IRON ACQUISITION, S LIPOPROTEIN, HOST-PATHOGEN INTERACTION, IRON PIRACY, TRANSF BINDING, OUTER-MEMBRANE, PROTEIN BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4QQ1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSFERRIN-BINDING PROTEIN 2  A 521 4023 0
2  Protein   TRANSFERRIN-BINDING PROTEIN 2  B 485 3768 0
3  Protein   TRANSFERRIN-BINDING PROTEIN 2  C 515 3982 0
4  Ligand   TRANSFERRIN-BINDING PROTEIN 2  A 5 0 10
5  Ligand   TRANSFERRIN-BINDING PROTEIN 2  B 3 0 8
6  Ligand   TRANSFERRIN-BINDING PROTEIN 2  C 3 0 7
7 Water     30 0 30
total       1562 11773 55
Proteins
Unit 1 GLY43 ALA44 ALA45 TYR46 GLY47 PHE48 ALA49 VAL50 LYS51 LEU52 PRO53 ARG54 ARG55 ASN56 ALA57 HIS58 PHE59 ASN60 PRO61 LYS62 TYR63 LYS64 GLU65 LYS66 HIS67 LYS68 PRO69 LEU70 GLY71 SER72 MET73 ASP74 TRP75 LYS76 LYS77 LEU78 GLN79 ARG80 GLY81 GLU82 PRO83 ASN84 SER85 PHE86 SER87 GLU88 ARG89 ASP90 GLU91 LEU92 GLU93 LYS94 LYS95 ARG96 GLY97 SER98 SER99 GLU100 LEU101 ILE102 GLU103 SER104 LYS105 TRP106 GLU107 ASP108 GLY109 GLN110 SER111 ARG112 VAL113 VAL114 GLY115 TYR116 THR117 ASN118 PHE119 THR120 TYR121 VAL122 ARG123 SER124 GLY125 TYR126 VAL127 TYR128 LEU129 ASN130 LYS131 ASN132 ASN133 ILE134 ASP135 ILE136 LYS137 ASN138 ASN139 ILE140 VAL141 LEU142 PHE143 GLY144 PRO145 ASP146 GLY147 TYR148 LEU149 TYR150 TYR151 LYS152 GLY153 LYS154 GLU155 PRO156 SER157 LYS158 GLU159 LEU160 PRO161 SER162 GLU163 LYS164 ILE165 THR166 TYR167 LYS168 GLY169 THR170 TRP171 ASP172 TYR173 VAL174 THR175 ASP176 ALA177 MET178 GLU179 LYS180 GLN181 ARG182 PHE183 GLU184 GLY185 LEU186 GLY187 SER188 ALA189 ALA190 GLY191 GLY192 ASP193 LYS194 SER195 GLY196 ALA197 LEU198 SER199 ALA200 LEU201 GLU202 GLU203 GLY204 VAL205 LEU206 ARG207 ASN208 GLN209 ALA210 GLU211 ALA212 SER213 SER214 GLY215 HIS216 THR217 ASP218 PHE219 GLY220 MET221 THR222 SER223 GLU224 PHE225 GLU226 VAL227 ASP228 PHE229 SER230 ASP231 LYS232 THR233 ILE234 LYS235 GLY236 THR237 LEU238 TYR239 ARG240 ASN241 ASN242 ARG243 ILE244 THR245 GLN246 ASN247 ASN248 SER249 GLU250 ASN251 LYS252 GLN253 ILE254 LYS255 THR256 THR257 ARG258 TYR259 THR260 ILE261 GLN262 ALA263 THR264 LEU265 HIS266 GLY267 ASN268 ARG269 PHE270 LYS271 GLY272 LYS273 ALA274 LEU275 ALA276 ALA277 ASP278 LYS279 GLY280 ALA281 THR282 ASN283 GLY284 SER285 HIS286 PRO287 PHE288 ILE289 SER290 ASP291 SER292 ASP293 SER294 LEU295 GLU296 GLY297 GLY298 PHE299 TYR300 GLY301 PRO302 LYS303 GLY304 GLU305 GLU306 LEU307 ALA308 GLY309 LYS310 PHE311 LEU312 SER313 ASN314 ASP315 ASN316 LYS317 VAL318 ALA319 ALA320 VAL321 PHE322 GLY323 ALA324 LYS325 GLN326 LYS327 ASP328 ALA335 ALA336 GLY337 PRO338 ALA339 THR340 GLU341 THR342 VAL343 ILE344 ASP345 ALA346 TYR347 ARG348 ILE349 THR350 GLY351 GLU352 GLU353 PHE354 LYS355 LYS356 GLU357 GLN358 ILE359 ASP360 SER361 PHE362 GLY363 ASP364 VAL365 LYS366 LYS367 LEU368 LEU369 VAL370 ASP371 GLY372 VAL373 GLU374 LEU375 SER376 LEU377 LEU378 PRO379 SER380 GLU381 GLY382 ASN383 LYS384 ALA385 ALA386 PHE387 GLN388 HIS389 GLU390 ILE391 GLU392 GLN393 ASN394 GLY395 VAL396 LYS397 ALA398 THR399 VAL400 CYS401 CYS402 SER403 ASN404 LEU405 ASP406 TYR407 MET408 SER409 PHE410 GLY411 LYS412 LEU413 SER414 LYS415 GLU416 ASN417 LYS418 ASP419 ASP420 MET421 PHE422 LEU423 GLN424 GLY425 VAL426 ARG427 THR428 PRO429 VAL430 SER431 ASP432 VAL433 ALA434 ALA435 ARG436 THR437 GLU438 ALA439 ASN440 ALA441 LYS442 TYR443 ARG444 GLY445 THR446 TRP447 TYR448 GLY449 TYR450 ILE451 ALA452 ASN453 GLY454 THR455 SER456 TRP457 SER458 GLY459 GLU460 ALA461 SER462 ASN463 GLY466 GLY467 ASN468 ARG469 ALA470 GLU471 PHE472 ASP473 VAL474 ASP475 PHE476 SER477 THR478 LYS479 LYS480 ILE481 SER482 GLY483 THR484 LEU485 THR486 ALA487 LYS488 ASP489 ARG490 THR491 SER492 PRO493 ALA494 PHE495 THR496 ILE497 THR498 ALA499 MET500 ILE501 LYS502 ASP503 ASN504 GLY505 PHE506 SER507 GLY508 VAL509 ALA510 LYS511 THR512 GLY513 GLU514 ASN515 GLY516 PHE517 ALA518 LEU519 ASP520 PRO521 GLN522 ASN523 THR524 GLY525 ASN526 SER527 HIS528 TYR529 THR530 HIS531 ILE532 GLU533 ALA534 THR535 VAL536 SER537 GLY538 GLY539 PHE540 TYR541 GLY542 LYS543 ASN544 ALA545 ILE546 GLU547 MET548 GLY549 GLY550 SER551 PHE552 SER553 PHE554 PRO555 GLY556 ASN557 GLN563 GLU564 LYS565 ALA566 SER567 VAL568 VAL569 PHE570 GLY571 ALA572 LYS573 ARG574 GLN575 GLN576
Unit 2 SER42 GLY43 ALA44 ALA45 TYR46 GLY47 PHE48 ALA49 VAL50 LYS51 LEU52 PRO53 ARG54 ARG55 ASN56 ALA57 HIS58 PHE59 ASN60 PRO61 LYS62 TYR63 LYS64 GLU65 LYS66 HIS67 LYS68 PRO69 LEU70 GLY71 SER72 MET73 ASP74 TRP75 LYS76 LYS77 LEU78 GLN79 ARG80 GLY81 GLU82 PRO83 ASN84 SER85 PHE86 SER87 GLU88 ARG89 ASP90 GLU91 LEU92 GLU93 LYS94 LYS95 ARG96 GLY97 SER98 SER99 GLU100 LEU101 ILE102 GLU103 SER104 LYS105 TRP106 GLU107 ASP108 GLY109 GLN110 SER111 ARG112 VAL113 VAL114 GLY115 TYR116 THR117 ASN118 PHE119 THR120 TYR121 VAL122 ARG123 SER124 GLY125 TYR126 VAL127 TYR128 LEU129 ASN130 LYS131 ASN132 ASN133 ILE134 ASP135 ILE136 LYS137 ASN138 ASN139 ILE140 VAL141 LEU142 PHE143 GLY144 PRO145 ASP146 GLY147 TYR148 LEU149 TYR150 TYR151 LYS152 GLY153 LYS154 GLU155 PRO156 SER157 LYS158 GLU159 LEU160 PRO161 SER162 GLU163 LYS164 ILE165 THR166 TYR167 LYS168 GLY169 THR170 TRP171 ASP172 TYR173 VAL174 THR175 ASP176 ALA177 MET178 GLU179 LYS180 GLN181 ARG182 PHE183 GLU184 GLY185 LEU186 GLY187 SER188 ALA189 ALA190 GLY191 GLY192 ASP193 LYS194 SER195 GLY196 ALA197 LEU198 SER199 ALA200 LEU201 GLU202 GLU203 GLY204 VAL205 LEU206 ARG207 ASN208 GLN209 ALA210 GLY215 HIS216 THR217 ASP218 PHE219 GLY220 MET221 THR222 SER223 GLU224 PHE225 GLU226 VAL227 ASP228 PHE229 SER230 ASP231 LYS232 THR233 ILE234 LYS235 GLY236 THR237 LEU238 TYR239 ARG240 ASN241 ASN242 ARG243 GLN253 ILE254 LYS255 THR256 THR257 ARG258 TYR259 THR260 ILE261 GLN262 ALA263 THR264 LEU265 HIS266 GLY267 ASN268 ARG269 PHE270 LYS271 GLY272 LYS273 ALA274 LEU275 ALA276 ALA277 ASP278 LYS279 GLY280 ALA281 THR282 ASN283 GLY284 SER285 HIS286 PRO287 PHE288 ILE289 SER290 ASP291 SER292 ASP293 SER294 LEU295 GLU296 GLY297 GLY298 PHE299 TYR300 GLY301 PRO302 LYS303 GLY304 GLU305 GLU306 LEU307 ALA308 GLY309 LYS310 PHE311 LEU312 SER313 ASN314 ASP315 ASN316 LYS317 VAL318 ALA319 ALA320 VAL321 PHE322 GLY323 ALA324 LYS325 GLN326 LYS327 ASP328 LYS329 PRO338 ALA339 THR340 GLU341 THR342 VAL343 ILE344 ASP345 ALA346 TYR347 ARG348 ILE349 THR350 GLY351 GLU352 GLU353 PHE354 LYS355 LYS356 GLU357 GLN358 ILE359 ASP360 SER361 PHE362 GLY363 ASP364 VAL365 LYS366 LYS367 LEU368 LEU369 VAL370 ASP371 GLY372 VAL373 GLU374 LEU375 SER376 LEU377 LEU378 PHE387 GLN388 HIS389 GLU390 ILE391 GLU392 GLN393 ASN394 GLY395 VAL396 LYS397 ALA398 THR399 VAL400 CYS401 CYS402 SER403 ASN404 LEU405 ASP406 TYR407 MET408 SER409 PHE410 GLY411 LYS412 LEU413 SER414 LYS415 GLU416 ASN417 LYS418 ASP419 ASP420 MET421 PHE422 LEU423 GLN424 GLY425 VAL426 ARG427 THR428 PRO429 VAL430 SER431 ASP432 VAL433 ALA434 ALA435 ARG436 THR437 GLU438 ALA439 ASN440 ALA441 LYS442 TYR443 ARG444 GLY445 THR446 TRP447 TYR448 GLY449 TYR450 ILE451 ALA452 ASN453 GLY454 THR455 SER456 TRP457 SER458 GLY459 GLU460 ALA461 SER462 ASN463 GLN464 GLU465 GLY466 GLY467 ASN468 ARG469 ALA470 GLU471 PHE472 ASP473 VAL474 ASP475 PHE476 SER477 THR478 LYS479 LYS480 ILE481 SER482 GLY483 THR484 LEU485 THR486 ALA487 LYS488 ASP489 ARG490 THR491 SER492 PRO493 ALA494 PHE495 THR496 ILE497 THR498 ALA499 MET500 ILE501 LYS502 ASP503 ASN504 GLY505 PHE506 SER507 GLY508 VAL509 ALA510 LYS511 THR512 GLY513 GLU514 ASN515 GLY516 PHE517 ALA518 SER527 HIS528 TYR529 THR530 HIS531 ILE532 GLU533 ALA534 THR535 VAL536 SER537 GLY538 GLY539 PHE540 TYR541 GLY542 LYS543 ASN544 ALA545 ILE546 GLU547 MET548 GLY549 GLY550 SER551 PHE552 SER553 PHE554 ALA566 SER567 VAL568 VAL569 PHE570 GLY571 ALA572 LYS573 ARG574
Unit 3 SER42 GLY43 ALA44 ALA45 TYR46 GLY47 PHE48 ALA49 VAL50 LYS51 LEU52 PRO53 ARG54 ARG55 ASN56 ALA57 HIS58 PHE59 ASN60 PRO61 LYS62 TYR63 LYS64 GLU65 LYS66 HIS67 LYS68 PRO69 LEU70 GLY71 SER72 MET73 ASP74 TRP75 LYS76 LYS77 LEU78 GLN79 ARG80 GLY81 GLU82 PRO83 ASN84 SER85 PHE86 SER87 GLU88 ARG89 ASP90 GLU91 LEU92 GLU93 LYS94 LYS95 ARG96 GLY97 SER98 SER99 GLU100 LEU101 ILE102 GLU103 SER104 LYS105 TRP106 GLU107 ASP108 GLY109 GLN110 SER111 ARG112 VAL113 VAL114 GLY115 TYR116 THR117 ASN118 PHE119 THR120 TYR121 VAL122 ARG123 SER124 GLY125 TYR126 VAL127 TYR128 LEU129 ASN130 LYS131 ASN132 ASN133 ILE134 ASP135 ILE136 ASN139 ILE140 VAL141 LEU142 PHE143 GLY144 PRO145 ASP146 GLY147 TYR148 LEU149 TYR150 TYR151 LYS152 GLY153 LYS154 GLU155 PRO156 SER157 LYS158 GLU159 LEU160 PRO161 SER162 GLU163 LYS164 ILE165 THR166 TYR167 LYS168 GLY169 THR170 TRP171 ASP172 TYR173 VAL174 THR175 ASP176 ALA177 MET178 GLU179 LYS180 GLN181 ARG182 PHE183 GLU184 GLY185 LEU186 GLY187 SER188 ALA189 ALA190 GLY191 GLY192 ASP193 LYS194 SER195 GLY196 ALA197 LEU198 SER199 ALA200 LEU201 GLU202 GLU203 GLY204 VAL205 LEU206 ARG207 ASN208 GLN209 ALA210 GLU211 ALA212 SER213 SER214 GLY215 HIS216 THR217 ASP218 PHE219 GLY220 MET221 THR222 SER223 GLU224 PHE225 GLU226 VAL227 ASP228 PHE229 SER230 ASP231 LYS232 THR233 ILE234 LYS235 GLY236 THR237 LEU238 TYR239 ARG240 ASN241 ASN242 ARG243 ILE244 THR245 GLN246 GLU250 ASN251 LYS252 GLN253 ILE254 LYS255 THR256 THR257 ARG258 TYR259 THR260 ILE261 GLN262 ALA263 THR264 LEU265 HIS266 GLY267 ASN268 ARG269 PHE270 LYS271 GLY272 LYS273 ALA274 LEU275 ALA276 ALA277 ASP278 LYS279 GLY280 ALA281 THR282 ASN283 GLY284 SER285 HIS286 PRO287 PHE288 ILE289 SER290 ASP291 SER292 ASP293 SER294 LEU295 GLU296 GLY297 GLY298 PHE299 TYR300 GLY301 PRO302 LYS303 GLY304 GLU305 GLU306 LEU307 ALA308 GLY309 LYS310 PHE311 LEU312 SER313 ASN314 ASP315 ASN316 LYS317 VAL318 ALA319 ALA320 VAL321 PHE322 GLY323 ALA324 LYS325 GLN326 LYS327 ASP328 LYS329 ALA335 ALA336 GLY337 PRO338 ALA339 THR340 GLU341 THR342 VAL343 ILE344 ASP345 ALA346 TYR347 ARG348 ILE349 THR350 GLY351 GLU352 GLU353 PHE354 LYS355 LYS356 GLU357 GLN358 ILE359 ASP360 SER361 PHE362 GLY363 ASP364 VAL365 LYS366 LYS367 LEU368 LEU369 VAL370 ASP371 GLY372 VAL373 GLU374 LEU375 SER376 LEU377 LEU378 PRO379 ALA385 ALA386 PHE387 GLN388 HIS389 GLU390 ILE391 GLU392 GLN393 ASN394 GLY395 VAL396 LYS397 ALA398 THR399 VAL400 CYS401 CYS402 SER403 ASN404 LEU405 ASP406 TYR407 MET408 SER409 PHE410 GLY411 LYS412 LEU413 SER414 LYS415 GLU416 ASN417 LYS418 ASP419 ASP420 MET421 PHE422 LEU423 GLN424 GLY425 VAL426 ARG427 THR428 PRO429 VAL430 SER431 ASP432 VAL433 ALA434 ALA435 ARG436 THR437 GLU438 ALA439 ASN440 ALA441 LYS442 TYR443 ARG444 GLY445 THR446 TRP447 TYR448 GLY449 TYR450 ILE451 ALA452 ASN453 GLY454 THR455 SER456 TRP457 SER458 GLY459 GLU460 ALA461 SER462 ASN463 GLN464 GLU465 GLY466 GLY467 ASN468 ARG469 ALA470 GLU471 PHE472 ASP473 VAL474 ASP475 PHE476 SER477 THR478 LYS479 LYS480 ILE481 SER482 GLY483 THR484 LEU485 THR486 ALA487 LYS488 ASP489 ARG490 THR491 SER492 PRO493 ALA494 PHE495 THR496 ILE497 THR498 ALA499 MET500 ILE501 LYS502 ASP503 ASN504 GLY505 PHE506 SER507 GLY508 VAL509 ALA510 LYS511 THR512 GLY513 GLU514 ASN515 GLY516 PHE517 ALA518 LEU519 ASP520 PRO521 GLN522 ASN523 THR524 GLY525 ASN526 SER527 HIS528 TYR529 THR530 HIS531 ILE532 GLU533 ALA534 THR535 VAL536 SER537 GLY538 GLY539 PHE540 TYR541 GLY542 LYS543 ASN544 ALA545 ILE546 GLU547 MET548 GLY549 GLY550 SER551 PHE552 SER553 PHE554 PRO555 GLU560 GLY561 LYS562 GLN563 GLU564 LYS565 ALA566 SER567 VAL568 VAL569 PHE570 GLY571 ALA572 LYS573 ARG574 GLN575
Ligands
Unit 4 CS601 CS602 CS603 CS604 GOL605
Unit 5 CS601 CS602 GOL603
Unit 6 CS601 CS602 SO4603
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany