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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE 2009 PANDEMIC H1N1 INFLUENZA VIRUS NEURAMINIDASE WITH A NEUTRALIZING ANTIBODY
Keywords INFLUENZA, NEURAMINIDASE, ANTIBODY, NEUTRALIZING ANTIBODY, H IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4QNP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEURAMINIDASE  A 386 2983 0
2  Protein   NEURAMINIDASE  B 386 2983 0
3  Protein   NEUTRALIZING ANTIBODY, LIGHT CHAIN  F 212 1635 0
4  Protein   NEUTRALIZING ANTIBODY, HEAVY CHAIN  E 224 1704 0
5  Protein   NEUTRALIZING ANTIBODY, LIGHT CHAIN  L 211 1626 0
6  Protein   NEUTRALIZING ANTIBODY, HEAVY CHAIN  H 224 1704 0
7  Ligand    C 2 0 28
8  Ligand    D 2 0 28
9  Ligand   NEURAMINIDASE  A 4 0 30
10  Ligand   NEURAMINIDASE  B 4 0 30
11 Water     181 0 181
total       1836 12635 297
Proteins
Unit 1 SER82 VAL83 LYS84 LEU85 ALA86 GLY87 ASN88 SER89 SER90 LEU91 CYS92 PRO93 VAL94 SER95 GLY96 TRP97 ALA98 ILE99 TYR100 SER101 LYS102 ASP103 ASN104 SER105 VAL106 ARG107 ILE108 GLY109 SER110 LYS111 GLY112 ASP113 VAL114 PHE115 VAL116 ILE117 ARG118 GLU119 PRO120 PHE121 ILE122 SER123 CYS124 SER125 PRO126 LEU127 GLU128 CYS129 ARG130 THR131 PHE132 PHE133 LEU134 THR135 GLN136 GLY137 ALA138 LEU139 LEU140 ASN141 ASP142 LYS143 HIS144 SER145 ASN146 GLY147 THR148 ILE149 LYS150 ASP151 ARG152 SER153 PRO154 TYR155 ARG156 THR157 LEU158 MET159 SER160 CYS161 PRO162 ILE163 GLY164 GLU165 VAL166 PRO167 SER168 PRO169 TYR170 ASN171 SER172 ARG173 PHE174 GLU175 SER176 VAL177 ALA178 TRP179 SER180 ALA181 SER182 ALA183 CYS184 HIS185 ASP186 GLY187 ILE188 ASN189 TRP190 LEU191 THR192 ILE193 GLY194 ILE195 SER196 GLY197 PRO198 ASP199 ASN200 GLY201 ALA202 VAL203 ALA204 VAL205 LEU206 LYS207 TYR208 ASN209 GLY210 ILE211 ILE212 THR213 ASP214 THR215 ILE216 LYS217 SER218 TRP219 ARG220 ASN221 ASN222 ILE223 LEU224 ARG225 THR226 GLN227 GLU228 SER229 GLU230 CYS231 ALA232 CYS233 VAL234 ASN235 GLY236 SER237 CYS238 PHE239 THR240 VAL241 MET242 THR243 ASP244 GLY245 PRO246 SER247 ASN248 GLY249 GLN250 ALA251 SER252 TYR253 LYS254 ILE255 PHE256 ARG257 ILE258 GLU259 LYS260 GLY261 LYS262 ILE263 VAL264 LYS265 SER266 VAL267 GLU268 MET269 ASN270 ALA271 PRO272 ASN273 TYR274 HIS275 TYR276 GLU277 GLU278 CYS279 SER280 CYS281 TYR282 PRO283 ASP284 SER285 SER286 GLU287 ILE288 THR289 CYS290 VAL291 CYS292 ARG293 ASP294 ASN295 TRP296 HIS297 GLY298 SER299 ASN300 ARG301 PRO302 TRP303 VAL304 SER305 PHE306 ASN307 GLN308 ASN309 LEU310 GLU311 TYR312 GLN313 ILE314 GLY315 TYR316 ILE317 CYS318 SER319 GLY320 ILE321 PHE322 GLY323 ASP324 ASN325 PRO326 ARG327 PRO328 ASN329 ASP330 LYS331 THR332 GLY333 SER334 CYS335 GLY336 PRO337 VAL338 SER339 SER340 ASN341 GLY342 ALA343 ASN344 GLY345 VAL346 LYS347 GLY348 PHE349 SER350 PHE351 LYS352 TYR353 GLY354 ASN355 GLY356 VAL357 TRP358 ILE359 GLY360 ARG361 THR362 LYS363 SER364 ILE365 SER366 SER367 ARG368 ASN369 GLY370 PHE371 GLU372 MET373 ILE374 TRP375 ASP376 PRO377 ASN378 GLY379 TRP380 THR381 GLY382 THR383 ASP384 ASN385 ASN386 PHE387 SER388 ILE389 LYS390 GLN391 ASP392 ILE393 VAL394 GLY395 ILE396 ASN397 GLU398 TRP399 SER400 GLY401 TYR402 SER403 GLY404 SER405 PHE406 VAL407 GLN408 HIS409 PRO410 GLU411 LEU412 THR413 GLY414 LEU415 ASP416 CYS417 ILE418 ARG419 PRO420 CYS421 PHE422 TRP423 VAL424 GLU425 LEU426 ILE427 ARG428 GLY429 ARG430 PRO431 LYS432 GLU433 ASN434 THR435 ILE436 TRP437 THR438 SER439 GLY440 SER441 SER442 ILE443 SER444 PHE445 CYS446 GLY447 VAL448 ASN449 SER450 ASP451 THR452 VAL453 GLY454 TRP455 SER456 TRP457 PRO458 ASP459 GLY460 ALA461 GLU462 LEU463 PRO464 PHE465 THR466 ILE467
Unit 2 SER82 VAL83 LYS84 LEU85 ALA86 GLY87 ASN88 SER89 SER90 LEU91 CYS92 PRO93 VAL94 SER95 GLY96 TRP97 ALA98 ILE99 TYR100 SER101 LYS102 ASP103 ASN104 SER105 VAL106 ARG107 ILE108 GLY109 SER110 LYS111 GLY112 ASP113 VAL114 PHE115 VAL116 ILE117 ARG118 GLU119 PRO120 PHE121 ILE122 SER123 CYS124 SER125 PRO126 LEU127 GLU128 CYS129 ARG130 THR131 PHE132 PHE133 LEU134 THR135 GLN136 GLY137 ALA138 LEU139 LEU140 ASN141 ASP142 LYS143 HIS144 SER145 ASN146 GLY147 THR148 ILE149 LYS150 ASP151 ARG152 SER153 PRO154 TYR155 ARG156 THR157 LEU158 MET159 SER160 CYS161 PRO162 ILE163 GLY164 GLU165 VAL166 PRO167 SER168 PRO169 TYR170 ASN171 SER172 ARG173 PHE174 GLU175 SER176 VAL177 ALA178 TRP179 SER180 ALA181 SER182 ALA183 CYS184 HIS185 ASP186 GLY187 ILE188 ASN189 TRP190 LEU191 THR192 ILE193 GLY194 ILE195 SER196 GLY197 PRO198 ASP199 ASN200 GLY201 ALA202 VAL203 ALA204 VAL205 LEU206 LYS207 TYR208 ASN209 GLY210 ILE211 ILE212 THR213 ASP214 THR215 ILE216 LYS217 SER218 TRP219 ARG220 ASN221 ASN222 ILE223 LEU224 ARG225 THR226 GLN227 GLU228 SER229 GLU230 CYS231 ALA232 CYS233 VAL234 ASN235 GLY236 SER237 CYS238 PHE239 THR240 VAL241 MET242 THR243 ASP244 GLY245 PRO246 SER247 ASN248 GLY249 GLN250 ALA251 SER252 TYR253 LYS254 ILE255 PHE256 ARG257 ILE258 GLU259 LYS260 GLY261 LYS262 ILE263 VAL264 LYS265 SER266 VAL267 GLU268 MET269 ASN270 ALA271 PRO272 ASN273 TYR274 HIS275 TYR276 GLU277 GLU278 CYS279 SER280 CYS281 TYR282 PRO283 ASP284 SER285 SER286 GLU287 ILE288 THR289 CYS290 VAL291 CYS292 ARG293 ASP294 ASN295 TRP296 HIS297 GLY298 SER299 ASN300 ARG301 PRO302 TRP303 VAL304 SER305 PHE306 ASN307 GLN308 ASN309 LEU310 GLU311 TYR312 GLN313 ILE314 GLY315 TYR316 ILE317 CYS318 SER319 GLY320 ILE321 PHE322 GLY323 ASP324 ASN325 PRO326 ARG327 PRO328 ASN329 ASP330 LYS331 THR332 GLY333 SER334 CYS335 GLY336 PRO337 VAL338 SER339 SER340 ASN341 GLY342 ALA343 ASN344 GLY345 VAL346 LYS347 GLY348 PHE349 SER350 PHE351 LYS352 TYR353 GLY354 ASN355 GLY356 VAL357 TRP358 ILE359 GLY360 ARG361 THR362 LYS363 SER364 ILE365 SER366 SER367 ARG368 ASN369 GLY370 PHE371 GLU372 MET373 ILE374 TRP375 ASP376 PRO377 ASN378 GLY379 TRP380 THR381 GLY382 THR383 ASP384 ASN385 ASN386 PHE387 SER388 ILE389 LYS390 GLN391 ASP392 ILE393 VAL394 GLY395 ILE396 ASN397 GLU398 TRP399 SER400 GLY401 TYR402 SER403 GLY404 SER405 PHE406 VAL407 GLN408 HIS409 PRO410 GLU411 LEU412 THR413 GLY414 LEU415 ASP416 CYS417 ILE418 ARG419 PRO420 CYS421 PHE422 TRP423 VAL424 GLU425 LEU426 ILE427 ARG428 GLY429 ARG430 PRO431 LYS432 GLU433 ASN434 THR435 ILE436 TRP437 THR438 SER439 GLY440 SER441 SER442 ILE443 SER444 PHE445 CYS446 GLY447 VAL448 ASN449 SER450 ASP451 THR452 VAL453 GLY454 TRP455 SER456 TRP457 PRO458 ASP459 GLY460 ALA461 GLU462 LEU463 PRO464 PHE465 THR466 ILE467
Unit 3 GLN1 ILE2 VAL3 LEU4 SER5 GLN6 SER7 PRO8 ALA9 ILE10 LEU11 SER12 ALA13 SER14 PRO15 GLY16 GLU17 LYS18 VAL19 THR20 MET21 THR22 CYS23 ARG24 THR25 SER26 SER27 SER28 VAL29 SER30 TYR31 MET32 HIS33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 SER41 SER42 PRO43 LYS44 PRO45 TRP46 ILE47 TYR48 ALA49 THR50 SER51 ASN52 LEU53 ALA54 SER55 GLY56 VAL57 PRO58 PHE59 ARG60 PHE61 SER62 GLY63 SER64 GLY65 SER66 GLY67 THR68 SER69 TYR70 SER71 LEU72 THR73 ILE74 SER75 ARG76 VAL77 GLU78 ALA79 GLU80 ASP81 ALA82 ALA83 THR84 TYR85 TYR86 CYS87 GLN88 GLN89 TRP90 ASN91 SER92 ASN93 PRO94 PRO95 THR96 PHE97 GLY98 GLY99 GLY100 THR101 LYS102 LEU103 GLU104 ILE105 LYS106 ARG107 ALA108 ASP109 ALA110 ALA111 PRO112 THR113 VAL114 SER115 ILE116 PHE117 PRO118 PRO119 SER120 SER121 GLU122 GLN123 LEU124 THR125 SER126 GLY127 GLY128 ALA129 SER130 VAL131 VAL132 CYS133 PHE134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 LYS141 ASP142 ILE143 ASN144 VAL145 LYS146 TRP147 LYS148 ILE149 ASP150 GLY151 SER152 GLU153 ARG154 GLN155 ASN156 GLY157 VAL158 LEU159 ASN160 SER161 TRP162 THR163 ASP164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 MET174 SER175 SER176 THR177 LEU178 THR179 LEU180 THR181 LYS182 ASP183 GLU184 TYR185 GLU186 ARG187 HIS188 ASN189 SER190 TYR191 THR192 CYS193 GLU194 ALA195 THR196 HIS197 LYS198 THR199 SER200 THR201 SER202 PRO203 ILE204 VAL205 LYS206 SER207 PHE208 ASN209 ARG210 ASN211 GLU212
Unit 4 GLN1 VAL2 LYS3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 LYS15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 ASN30 THR31 TYR32 ALA33 MET34 ASN35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 ARG50 ILE51 ARG52 SER53 LYS54 SER55 ASN56 ASN57 TYR58 ALA59 THR60 PHE61 TYR62 ALA63 ASP64 SER65 VAL66 LYS67 ASP68 ARG69 PHE70 THR71 ILE72 SER73 ARG74 ASP75 ASP76 SER77 GLN78 SER79 MET80 LEU81 TYR82 LEU83 GLN84 MET85 HIS86 ASN87 LEU88 LYS89 THR90 ASP91 ASP92 THR93 ALA94 MET95 TYR96 TYR97 CYS98 VAL99 ARG100 PRO101 SER102 ILE103 TYR104 TYR105 TYR106 ALA107 SER108 GLY109 TYR110 LEU111 ASP112 VAL113 TRP114 GLY115 ALA116 GLY117 THR118 THR119 VAL120 THR121 VAL122 SER123 SER124 ALA125 LYS126 THR127 THR128 ALA129 PRO130 SER131 VAL132 TYR133 PRO134 LEU135 ALA136 PRO137 VAL138 CYS139 GLY140 ASP141 THR142 THR143 GLY144 SER145 SER146 VAL147 THR148 LEU149 GLY150 CYS151 LEU152 VAL153 LYS154 GLY155 TYR156 PHE157 PRO158 GLU159 PRO160 VAL161 THR162 LEU163 THR164 TRP165 ASN166 SER167 GLY168 SER169 LEU170 SER171 SER172 GLY173 VAL174 HIS175 THR176 PHE177 PRO178 ALA179 VAL180 LEU181 GLN182 SER183 ASP184 LEU185 TYR186 THR187 LEU188 SER189 SER190 SER191 VAL192 THR193 VAL194 THR195 SER196 SER197 THR198 TRP199 PRO200 SER201 GLN202 SER203 ILE204 THR205 CYS206 ASN207 VAL208 ALA209 HIS210 PRO211 ALA212 SER213 SER214 THR215 LYS216 VAL217 ASP218 LYS219 LYS220 ILE221 GLU222 PRO223 ARG224
Unit 5 GLN1 ILE2 VAL3 LEU4 SER5 GLN6 SER7 PRO8 ALA9 ILE10 LEU11 SER12 ALA13 SER14 PRO15 GLY16 GLU17 LYS18 VAL19 THR20 MET21 THR22 CYS23 ARG24 THR25 SER26 SER27 SER28 VAL29 SER30 TYR31 MET32 HIS33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 SER41 SER42 PRO43 LYS44 PRO45 TRP46 ILE47 TYR48 ALA49 THR50 SER51 ASN52 LEU53 ALA54 SER55 GLY56 VAL57 PRO58 PHE59 ARG60 PHE61 SER62 GLY63 SER64 GLY65 SER66 GLY67 THR68 SER69 TYR70 SER71 LEU72 THR73 ILE74 SER75 ARG76 VAL77 GLU78 ALA79 GLU80 ASP81 ALA82 ALA83 THR84 TYR85 TYR86 CYS87 GLN88 GLN89 TRP90 ASN91 SER92 ASN93 PRO94 PRO95 THR96 PHE97 GLY98 GLY99 GLY100 THR101 LYS102 LEU103 GLU104 ILE105 LYS106 ARG107 ALA108 ASP109 ALA110 ALA111 PRO112 THR113 VAL114 SER115 ILE116 PHE117 PRO118 PRO119 SER120 SER121 GLU122 GLN123 LEU124 THR125 SER126 GLY127 GLY128 ALA129 SER130 VAL131 VAL132 CYS133 PHE134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 LYS141 ASP142 ILE143 ASN144 VAL145 LYS146 TRP147 LYS148 ILE149 ASP150 GLY151 SER152 GLU153 ARG154 GLN155 ASN156 GLY157 VAL158 LEU159 ASN160 SER161 TRP162 THR163 ASP164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 MET174 SER175 SER176 THR177 LEU178 THR179 LEU180 THR181 LYS182 ASP183 GLU184 TYR185 GLU186 ARG187 HIS188 ASN189 SER190 TYR191 THR192 CYS193 GLU194 ALA195 THR196 HIS197 LYS198 THR199 SER200 THR201 SER202 PRO203 ILE204 VAL205 LYS206 SER207 PHE208 ASN209 ARG210 ASN211
Unit 6 GLN1 VAL2 LYS3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 LYS15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 ASN30 THR31 TYR32 ALA33 MET34 ASN35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 ARG50 ILE51 ARG52 SER53 LYS54 SER55 ASN56 ASN57 TYR58 ALA59 THR60 PHE61 TYR62 ALA63 ASP64 SER65 VAL66 LYS67 ASP68 ARG69 PHE70 THR71 ILE72 SER73 ARG74 ASP75 ASP76 SER77 GLN78 SER79 MET80 LEU81 TYR82 LEU83 GLN84 MET85 HIS86 ASN87 LEU88 LYS89 THR90 ASP91 ASP92 THR93 ALA94 MET95 TYR96 TYR97 CYS98 VAL99 ARG100 PRO101 SER102 ILE103 TYR104 TYR105 TYR106 ALA107 SER108 GLY109 TYR110 LEU111 ASP112 VAL113 TRP114 GLY115 ALA116 GLY117 THR118 THR119 VAL120 THR121 VAL122 SER123 SER124 ALA125 LYS126 THR127 THR128 ALA129 PRO130 SER131 VAL132 TYR133 PRO134 LEU135 ALA136 PRO137 VAL138 CYS139 GLY140 ASP141 THR142 THR143 GLY144 SER145 SER146 VAL147 THR148 LEU149 GLY150 CYS151 LEU152 VAL153 LYS154 GLY155 TYR156 PHE157 PRO158 GLU159 PRO160 VAL161 THR162 LEU163 THR164 TRP165 ASN166 SER167 GLY168 SER169 LEU170 SER171 SER172 GLY173 VAL174 HIS175 THR176 PHE177 PRO178 ALA179 VAL180 LEU181 GLN182 SER183 ASP184 LEU185 TYR186 THR187 LEU188 SER189 SER190 SER191 VAL192 THR193 VAL194 THR195 SER196 SER197 THR198 TRP199 PRO200 SER201 GLN202 SER203 ILE204 THR205 CYS206 ASN207 VAL208 ALA209 HIS210 PRO211 ALA212 SER213 SER214 THR215 LYS216 VAL217 ASP218 LYS219 LYS220 ILE221 GLU222 PRO223 ARG224
Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG503 NAG504 CA505 CA506
Unit 10 NAG501 NAG502 CA505 CA506
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany