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Title | STRUCTURE OF BACTERIAL POLYNUCLEOTIDE KINASE BOUND TO GTP AN | |
Keywords | RNA REPAIR, P-LOOP PHOSPHOTRANSFERASE, POLYNUCLEOTIDE KINASE HYDROLASE-RNA COMPLEX, TRANSFERASE-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4QM6 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | METALLOPHOSPHOESTERASE | A | 171 | 1368 | 0 |
2 | Protein | METALLOPHOSPHOESTERASE | B | 171 | 1369 | 0 |
3 | DNA/RNA | C | 5 | 84 | 0 | |
4 | DNA/RNA | D | 5 | 84 | 0 | |
5 | Ligand | METALLOPHOSPHOESTERASE | A | 4 | 0 | 39 |
6 | Ligand | METALLOPHOSPHOESTERASE | B | 6 | 0 | 37 |
7 | Water | 567 | 0 | 567 | ||
total | 929 | 2905 | 643 |
Unit 1 | SER0 MET1 LYS2 LEU3 THR4 ILE5 PRO6 GLU7 LEU8 SER9 LEU10 VAL11 VAL12 LEU13 ILE14 GLY15 SER16 SER17 GLY18 SER19 GLY20 LYS21 SER22 THR23 PHE24 ALA25 LYS26 LYS27 HIS28 PHE29 LYS30 PRO31 THR32 GLU33 VAL34 ILE35 SER36 SER37 ASN38 PHE39 CYS40 ARG41 GLY42 LEU43 VAL44 SER45 ASP46 ASP47 GLU48 ASN49 ASP50 GLN51 THR52 VAL53 THR54 GLY55 ALA56 ALA57 PHE58 ASP59 VAL60 LEU61 HIS62 TYR63 ILE64 VAL65 SER66 LYS67 ARG68 LEU69 GLN70 LEU71 GLY72 LYS73 LEU74 THR75 VAL76 VAL77 ASP78 ALA79 THR80 ASN81 VAL82 GLN83 GLU84 SER85 ALA86 ARG87 LYS88 PRO89 LEU90 ILE91 GLU92 ILE93 ALA94 LYS95 ASP96 TYR97 HIS98 CYS99 PHE100 PRO101 VAL102 ALA103 VAL104 VAL105 PHE106 ASN107 LEU108 PRO109 GLU110 LYS111 VAL112 CYS113 GLN114 GLU115 ARG116 ASN117 LYS118 ASN119 ARG120 THR121 ASP122 ARG123 GLN124 VAL125 GLU126 GLU127 TYR128 VAL129 ILE130 ARG131 LYS132 HIS133 THR134 GLN135 GLN136 MET137 LYS138 LYS139 SER140 ILE141 LYS142 GLY143 LEU144 GLN145 ARG146 GLU147 GLY148 PHE149 ARG150 TYR151 VAL152 TYR153 ILE154 LEU155 ASN156 SER157 PRO158 GLU159 GLU160 VAL161 GLU162 GLU163 VAL164 VAL165 PHE166 GLU167 ARG168 GLN169 PRO170 |
Unit 2 | SER0 MET1 LYS2 LEU3 THR4 ILE5 PRO6 GLU7 LEU8 SER9 LEU10 VAL11 VAL12 LEU13 ILE14 GLY15 SER16 SER17 GLY18 SER19 GLY20 LYS21 SER22 THR23 PHE24 ALA25 LYS26 LYS27 HIS28 PHE29 LYS30 PRO31 THR32 GLU33 VAL34 ILE35 SER36 SER37 ASN38 PHE39 CYS40 ARG41 GLY42 LEU43 VAL44 SER45 ASP46 ASP47 GLU48 ASN49 ASP50 GLN51 THR52 VAL53 THR54 GLY55 ALA56 ALA57 PHE58 ASP59 VAL60 LEU61 HIS62 TYR63 ILE64 VAL65 SER66 LYS67 ARG68 LEU69 GLN70 LEU71 GLY72 LYS73 LEU74 THR75 VAL76 VAL77 ASP78 ALA79 THR80 ASN81 VAL82 GLN83 GLU84 SER85 ALA86 ARG87 LYS88 PRO89 LEU90 ILE91 GLU92 ILE93 ALA94 LYS95 ASP96 TYR97 HIS98 CYS99 PHE100 PRO101 VAL102 ALA103 VAL104 VAL105 PHE106 ASN107 LEU108 PRO109 GLU110 LYS111 VAL112 CYS113 GLN114 GLU115 ARG116 ASN117 LYS118 ASN119 ARG120 THR121 ASP122 ARG123 GLN124 VAL125 GLU126 GLU127 TYR128 VAL129 ILE130 ARG131 LYS132 HIS133 THR134 GLN135 GLN136 MET137 LYS138 LYS139 SER140 ILE141 LYS142 GLY143 LEU144 GLN145 ARG146 GLU147 GLY148 PHE149 ARG150 TYR151 VAL152 TYR153 ILE154 LEU155 ASN156 SER157 PRO158 GLU159 GLU160 VAL161 GLU162 GLU163 VAL164 VAL165 PHE166 GLU167 ARG168 GLN169 PRO170 |
Unit 3 | C1 C2 U3 G4 U5 |
Unit 4 | C1 C2 U3 G4 U5 |
Unit 5 | GTP1001 MG1002 PO41003 NA1004 |
Unit 6 | GTP1001 MG1002 NA1003 NA1004 NA1005 NA1006 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |