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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TWISTER WITH THE NUCLEOTIDE 5'- TO THE SITE DISORDERED AT 3.1 A RESOLUTION
Keywords SELF-CLEAVING RIBOZYME, 2' DEOXY SUBSITUTION, NUCLEOTIDE 5 (
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4QJD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    A 24 498 0
2  RNA    B 47 996 23
3  DNA/RNA    C 25 518 0
4  RNA    D 47 996 32
5  DNA/RNA    E 26 540 0
6  RNA    F 47 996 32
7  DNA/RNA    G 25 518 0
8  RNA    H 47 996 23
9  Ligand   TWISTER RNA SEQUENCE  A 1 0 1
10  Ligand   TWISTER RNA SEQUENCE  F 2 0 2
11  Ligand   TWISTER RNA SEQUENCE  H 1 0 1
12 Water     16 0 16
total       308 6058 130

Nucleic acids
Unit 1 U3 G4 U5 A6 A7 C8 U9 C10 C11 G12 C13 C14 U15 A16 U17 G18 U19 C20 A21 U22 C23 U24 U25 A26
Unit 2 GTP27 U28 A29 A30 A31 U32 G33 A34 U35 A36 U37 A38 G39 C40 C41 G42 G43 U44 C45 C46 C47 A48 A49 G50 C51 C52 C53 G54 G55 A56 A57 A58 A59 A60 G61 G62 A63 G64 G65 A66 G67 G68 G69 U70 A71 U72 A73
Unit 3 U1 A2 U3 G4 U5 A6 A7 C8 U9 C10 C11 G12 C13 C14 U15 A16 U17 G18 U19 C20 A21 U22 C23 U24 U25
Unit 4 GTP27 U28 A29 A30 A31 U32 G33 A34 U35 A36 U37 A38 G39 C40 C41 G42 G43 U44 C45 C46 C47 A48 A49 G50 C51 C52 C53 G54 G55 A56 A57 A58 A59 A60 G61 G62 A63 G64 G65 A66 G67 G68 G69 U70 A71 U72 A73
Unit 5 U1 A2 U3 G4 U5 A6 A7 C8 U9 C10 C11 G12 C13 C14 U15 A16 U17 G18 U19 C20 A21 U22 C23 U24 U25 A26
Unit 6 GTP27 U28 A29 A30 A31 U32 G33 A34 U35 A36 U37 A38 G39 C40 C41 G42 G43 U44 C45 C46 C47 A48 A49 G50 C51 C52 C53 G54 G55 A56 A57 A58 A59 A60 G61 G62 A63 G64 G65 A66 G67 G68 G69 U70 A71 U72 A73
Unit 7 U1 A2 U3 G4 U5 A6 A7 C8 U9 C10 C11 G12 C13 C14 U15 A16 U17 G18 U19 C20 A21 U22 C23 U24 U25
Unit 8 GTP27 U28 A29 A30 A31 U32 G33 A34 U35 A36 U37 A38 G39 C40 C41 G42 G43 U44 C45 C46 C47 A48 A49 G50 C51 C52 C53 G54 G55 A56 A57 A58 A59 A60 G61 G62 A63 G64 G65 A66 G67 G68 G69 U70 A71 U72 A73

Ligands
Unit 9 MG101
Unit 10 MG101 MG102
Unit 11 MG101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany