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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF MOUSE TLR9
Keywords GLYCOSYLATION, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4QDH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VARIABLE LYMPHOCYTE RECEPTOR B, TOLL-LIKE RECEPTO CHIMERA  A 402 3155 0
2  Protein   VARIABLE LYMPHOCYTE RECEPTOR B, TOLL-LIKE RECEPTO CHIMERA  B 393 3077 0
3  Ligand   VARIABLE LYMPHOCYTE RECEPTOR B, TOLL-LIKE RECEPTO CHIMERA  A 9 0 90
4  Ligand   VARIABLE LYMPHOCYTE RECEPTOR B, TOLL-LIKE RECEPTO CHIMERA  B 9 0 90
5 Water     120 0 120
total       933 6232 300
Proteins
Unit 1 CYS1 PRO2 SER3 ARG4 CYS5 SER6 CYS7 SER8 GLY9 THR10 GLU11 ILE12 ARG13 CYS14 ASN15 SER16 LYS17 GLY18 LEU19 THR20 SER21 VAL22 PRO23 THR24 GLY25 ILE26 PRO27 SER28 SER29 ALA30 THR31 ARG32 LEU33 GLU34 LEU35 GLU36 SER37 ASN38 LYS39 LEU40 GLN41 SER42 LEU43 PRO44 HIS45 GLY46 VAL47 PHE48 ASP49 LYS50 LEU51 THR52 GLN53 LEU54 THR55 LYS56 LEU57 SER58 LEU59 SER60 ARG61 ASN62 ASN63 LEU64 VAL65 THR66 ILE67 LYS68 PRO69 GLU70 MET71 PHE72 VAL73 ASN74 LEU75 SER76 ARG77 LEU78 GLN79 CYS80 LEU81 SER82 LEU83 SER84 HIS85 ASN86 SER87 ILE88 ALA89 GLN90 ALA91 VAL92 ASN93 GLY94 SER95 GLN96 PHE97 LEU98 PRO99 LEU100 THR101 ASN102 LEU103 GLN104 VAL105 LEU106 ASP107 LEU108 SER109 HIS110 ASN111 LYS112 LEU113 ASP114 LEU115 TYR116 HIS117 TRP118 LYS119 SER120 PHE121 SER122 GLU123 LEU124 PRO125 GLN126 LEU127 GLN128 ALA129 LEU130 ASP131 LEU132 SER133 TYR134 ASN135 SER136 GLN137 PRO138 PHE139 ILE144 GLY145 HIS146 ASN147 PHE148 SER149 PHE150 VAL151 THR152 HIS153 LEU154 SER155 MET156 LEU157 GLN158 SER159 LEU160 SER161 LEU162 ALA163 HIS164 ASN165 ASP166 ILE167 HIS168 THR169 ARG170 VAL171 SER172 SER173 HIS174 LEU175 ASN176 SER177 ASN178 SER179 VAL180 ARG181 PHE182 LEU183 ASP184 PHE185 SER186 GLY187 ASN188 GLY189 MET190 GLY191 ARG192 MET193 TRP194 ASP195 GLU196 GLY197 GLY198 LEU199 TYR200 LEU201 HIS202 PHE203 PHE204 GLN205 GLY206 LEU207 SER208 GLY209 LEU210 LEU211 LYS212 LEU213 ASP214 LEU215 SER216 GLN217 ASN218 ASN219 LEU220 HIS221 ILE222 LEU223 ARG224 PRO225 GLN226 ASN227 LEU228 ASP229 ASN230 LEU231 PRO232 LYS233 SER234 LEU235 LYS236 LEU237 LEU238 SER239 LEU240 ARG241 ASP242 ASN243 TYR244 LEU245 SER246 PHE247 PHE248 ASN249 TRP250 THR251 SER252 LEU253 SER254 PHE255 LEU256 PRO257 ASN258 LEU259 GLU260 VAL261 LEU262 ASP263 LEU264 ALA265 GLY266 ASN267 GLN268 LEU269 LYS270 ALA271 LEU272 THR273 ASN274 GLY275 THR276 LEU277 PRO278 ASN279 GLY280 THR281 LEU282 LEU283 GLN284 LYS285 LEU286 ASP287 VAL288 SER289 SER290 ASN291 SER292 ILE293 VAL294 SER295 VAL296 VAL297 PRO298 ALA299 PHE300 PHE301 ALA302 LEU303 ALA304 VAL305 GLU306 LEU307 LYS308 GLU309 VAL310 ASN311 LEU312 SER313 HIS314 ASN315 ILE316 LEU317 LYS318 THR319 VAL320 ASP321 ARG322 SER323 TRP324 PHE325 GLY326 PRO327 ILE328 VAL329 MET330 ASN331 LEU332 LYS333 GLU334 LEU335 ALA336 LEU337 ASP338 THR339 ASN340 GLN341 LEU342 LYS343 SER344 VAL345 PRO346 ASP347 GLY348 ILE349 PHE350 ASP351 ARG352 LEU353 THR354 SER355 LEU356 GLN357 LYS358 ILE359 TRP360 LEU361 HIS362 THR363 ASN364 PRO365 TRP366 ASP367 CYS368 SER369 CYS370 PRO371 ARG372 ILE373 ASP374 TYR375 LEU376 SER377 ARG378 TRP379 LEU380 ASN381 LYS382 ASN383 SER384 GLN385 LYS386 GLU387 GLN388 GLY389 SER390 ALA391 LYS392 CYS393 SER394 GLY395 SER396 GLY397 LYS398 PRO399 VAL400 ARG401 SER402 ILE403 ILE404 CYS405 PRO406
Unit 2 CYS1 PRO2 SER3 ARG4 CYS5 SER6 CYS7 SER8 GLY9 THR10 GLU11 ILE12 ARG13 CYS14 ASN15 SER16 LYS17 GLY18 LEU19 THR20 SER21 VAL22 PRO23 THR24 GLY25 ILE26 PRO27 SER28 SER29 ALA30 THR31 ARG32 LEU33 GLU34 LEU35 GLU36 SER37 ASN38 LYS39 LEU40 GLN41 SER42 LEU43 PRO44 HIS45 GLY46 VAL47 PHE48 ASP49 LYS50 LEU51 THR52 GLN53 LEU54 THR55 LYS56 LEU57 SER58 LEU59 SER60 ARG61 ASN62 ASN63 LEU64 VAL65 THR66 ILE67 LYS68 PRO69 GLU70 MET71 PHE72 VAL73 ASN74 LEU75 SER76 ARG77 LEU78 GLN79 CYS80 LEU81 SER82 LEU83 SER84 HIS85 ASN86 SER87 ILE88 ALA89 GLN90 ALA91 VAL92 ASN93 GLY94 SER95 GLN96 PHE97 LEU98 PRO99 LEU100 THR101 ASN102 LEU103 GLN104 VAL105 LEU106 ASP107 LEU108 SER109 HIS110 ASN111 LYS112 LEU113 ASP114 LEU115 TYR116 HIS117 TRP118 LYS119 SER120 PHE121 SER122 GLU123 LEU124 PRO125 GLN126 LEU127 GLN128 ALA129 LEU130 ASP131 LEU132 SER133 TYR134 ASN135 SER136 GLN137 PRO138 PHE139 ILE144 GLY145 HIS146 ASN147 PHE148 SER149 PHE150 VAL151 THR152 HIS153 LEU154 SER155 MET156 LEU157 GLN158 SER159 LEU160 SER161 LEU162 ALA163 HIS164 ASN165 ASP166 ILE167 HIS168 THR169 ARG170 VAL171 SER172 SER173 HIS174 LEU175 ASN176 SER177 ASN178 SER179 VAL180 ARG181 PHE182 LEU183 ASP184 PHE185 SER186 GLY187 ASN188 GLY189 MET190 GLY191 ARG192 MET193 TRP194 ASP195 GLU196 GLY197 GLY198 LEU199 TYR200 LEU201 HIS202 PHE203 PHE204 GLN205 GLY206 LEU207 SER208 GLY209 LEU210 LEU211 LYS212 LEU213 ASP214 LEU215 SER216 GLN217 ASN218 ASN219 LEU220 HIS221 ILE222 LEU223 ARG224 PRO225 GLN226 ASN227 LEU228 ASP229 ASN230 LEU231 PRO232 LYS233 SER234 LEU235 LYS236 LEU237 LEU238 SER239 LEU240 ARG241 ASP242 ASN243 TYR244 LEU245 SER246 PHE247 PHE248 ASN249 TRP250 THR251 SER252 LEU253 SER254 PHE255 LEU256 PRO257 ASN258 LEU259 GLU260 VAL261 LEU262 ASP263 LEU264 ALA265 GLY266 ASN267 GLN268 LEU269 LYS270 ALA271 LEU272 THR273 ASN274 GLY275 THR276 LEU277 PRO278 ASN279 GLY280 THR281 LEU282 LEU283 GLN284 LYS285 LEU286 ASP287 VAL288 SER289 SER290 ASN291 SER292 ILE293 VAL294 SER295 VAL296 VAL297 PRO298 ALA299 PHE300 PHE301 ALA302 LEU303 ALA304 VAL305 GLU306 LEU307 LYS308 GLU309 VAL310 ASN311 LEU312 SER313 HIS314 ASN315 ILE316 LEU317 LYS318 THR319 VAL320 ASP321 ARG322 SER323 TRP324 LEU332 LYS333 GLU334 LEU335 ALA336 LEU337 ASP338 THR339 ASN340 GLN341 LEU342 LYS343 SER344 VAL345 PRO346 ASP347 GLY348 ILE349 PHE350 ASP351 THR354 SER355 LEU356 GLN357 LYS358 ILE359 TRP360 LEU361 HIS362 THR363 ASN364 PRO365 TRP366 ASP367 CYS368 SER369 CYS370 PRO371 ARG372 ILE373 ASP374 TYR375 LEU376 SER377 ARG378 TRP379 LEU380 ASN381 LYS382 ASN383 SER384 GLN385 LYS386 GLU387 GLN388 GLY389 SER390 ALA391 LYS392 CYS393 SER394 GLY395 SER396 GLY397 LYS398 PRO399 VAL400 ARG401 SER402 ILE403 ILE404 CYS405 PRO406
Ligands
Unit 3 NAG501 NAG502 NAG503 NAG504 NAG505 SO4506 SO4507 SO4508 SO4509
Unit 4 NAG501 NAG502 NAG503 NAG504 NAG505 SO4506 SO4507 SO4508 SO4509
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany