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Title | CRYSTAL STRUCTURE OF I243N/Y306F HDAC8 IN COMPLEX WITH A TET SUBSTRATE | |
Keywords | METALLOENZYME, HYDROLASE, HISTONE DEACETYLASE, ENZYME SUBSTR COMPLEX, CORNELIA DE LANGE SYNDROME, ARGINASE/DEACETYLASE F | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4QA6 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | HISTONE DEACETYLASE 8 | A | 364 | 2830 | 0 |
2 | Protein | HISTONE DEACETYLASE 8 | B | 364 | 2827 | 0 |
3 | Protein | TETRAPEPTIDE SUBSTRATE | C | 5 | 21 | 27 |
4 | Protein | TETRAPEPTIDE SUBSTRATE | D | 5 | 21 | 27 |
5 | Ligand | HISTONE DEACETYLASE 8 | A | 4 | 0 | 9 |
6 | Ligand | HISTONE DEACETYLASE 8 | B | 3 | 0 | 3 |
7 | Ligand | TETRAPEPTIDE SUBSTRATE | C | 1 | 0 | 13 |
8 | Ligand | TETRAPEPTIDE SUBSTRATE | D | 2 | 0 | 19 |
9 | Water | 385 | 0 | 385 | ||
total | 1133 | 5699 | 483 |
Unit 1 | LEU14 VAL15 PRO16 VAL17 TYR18 ILE19 TYR20 SER21 PRO22 GLU23 TYR24 VAL25 SER26 MET27 CYS28 ASP29 SER30 LEU31 ALA32 LYS33 ILE34 PRO35 LYS36 ARG37 ALA38 SER39 MET40 VAL41 HIS42 SER43 LEU44 ILE45 GLU46 ALA47 TYR48 ALA49 LEU50 HIS51 LYS52 GLN53 MET54 ARG55 ILE56 VAL57 LYS58 PRO59 LYS60 VAL61 ALA62 SER63 MET64 GLU65 GLU66 MET67 ALA68 THR69 PHE70 HIS71 THR72 ASP73 ALA74 TYR75 LEU76 GLN77 HIS78 LEU79 GLN80 LYS81 VAL82 SER83 GLN84 GLU85 GLY86 ASP87 ASP88 ASP89 HIS90 PRO91 ASP92 SER93 ILE94 GLU95 TYR96 GLY97 LEU98 GLY99 TYR100 ASP101 CYS102 PRO103 ALA104 THR105 GLU106 GLY107 ILE108 PHE109 ASP110 TYR111 ALA112 ALA113 ALA114 ILE115 GLY116 GLY117 ALA118 THR119 ILE120 THR121 ALA122 ALA123 GLN124 CYS125 LEU126 ILE127 ASP128 GLY129 MET130 CYS131 LYS132 VAL133 ALA134 ILE135 ASN136 TRP137 SER138 GLY139 GLY140 TRP141 HIS142 HIS143 ALA144 LYS145 LYS146 ASP147 GLU148 ALA149 SER150 GLY151 PHE152 CYS153 TYR154 LEU155 ASN156 ASP157 ALA158 VAL159 LEU160 GLY161 ILE162 LEU163 ARG164 LEU165 ARG166 ARG167 LYS168 PHE169 GLU170 ARG171 ILE172 LEU173 TYR174 VAL175 ASP176 LEU177 ASP178 LEU179 HIS180 HIS181 GLY182 ASP183 GLY184 VAL185 GLU186 ASP187 ALA188 PHE189 SER190 PHE191 THR192 SER193 LYS194 VAL195 MET196 THR197 VAL198 SER199 LEU200 HIS201 LYS202 PHE203 SER204 PRO205 GLY206 PHE207 PHE208 PRO209 GLY210 THR211 GLY212 ASP213 VAL214 SER215 ASP216 VAL217 GLY218 LEU219 GLY220 LYS221 GLY222 ARG223 TYR224 TYR225 SER226 VAL227 ASN228 VAL229 PRO230 ILE231 GLN232 ASP233 GLY234 ILE235 GLN236 ASP237 GLU238 LYS239 TYR240 TYR241 GLN242 ASN243 CYS244 GLU245 SER246 VAL247 LEU248 LYS249 GLU250 VAL251 TYR252 GLN253 ALA254 PHE255 ASN256 PRO257 LYS258 ALA259 VAL260 VAL261 LEU262 GLN263 LEU264 GLY265 ALA266 ASP267 THR268 ILE269 ALA270 GLY271 ASP272 PRO273 MET274 CYS275 SER276 PHE277 ASN278 MET279 THR280 PRO281 VAL282 GLY283 ILE284 GLY285 LYS286 CYS287 LEU288 LYS289 TYR290 ILE291 LEU292 GLN293 TRP294 GLN295 LEU296 ALA297 THR298 LEU299 ILE300 LEU301 GLY302 GLY303 GLY304 GLY305 PHE306 ASN307 LEU308 ALA309 ASN310 THR311 ALA312 ARG313 CYS314 TRP315 THR316 TYR317 LEU318 THR319 GLY320 VAL321 ILE322 LEU323 GLY324 LYS325 THR326 LEU327 SER328 SER329 GLU330 ILE331 PRO332 ASP333 HIS334 GLU335 PHE336 PHE337 THR338 ALA339 TYR340 GLY341 PRO342 ASP343 TYR344 VAL345 LEU346 GLU347 ILE348 THR349 PRO350 SER351 CYS352 ARG353 PRO354 ASP355 ARG356 ASN357 GLU358 PRO359 HIS360 ARG361 ILE362 GLN363 GLN364 ILE365 LEU366 ASN367 TYR368 ILE369 LYS370 GLY371 ASN372 LEU373 LYS374 HIS375 VAL376 VAL377 |
Unit 2 | LEU14 VAL15 PRO16 VAL17 TYR18 ILE19 TYR20 SER21 PRO22 GLU23 TYR24 VAL25 SER26 MET27 CYS28 ASP29 SER30 LEU31 ALA32 LYS33 ILE34 PRO35 LYS36 ARG37 ALA38 SER39 MET40 VAL41 HIS42 SER43 LEU44 ILE45 GLU46 ALA47 TYR48 ALA49 LEU50 HIS51 LYS52 GLN53 MET54 ARG55 ILE56 VAL57 LYS58 PRO59 LYS60 VAL61 ALA62 SER63 MET64 GLU65 GLU66 MET67 ALA68 THR69 PHE70 HIS71 THR72 ASP73 ALA74 TYR75 LEU76 GLN77 HIS78 LEU79 GLN80 LYS81 VAL82 SER83 GLN84 GLU85 GLY86 ASP87 ASP88 ASP89 HIS90 PRO91 ASP92 SER93 ILE94 GLU95 TYR96 GLY97 LEU98 GLY99 TYR100 ASP101 CYS102 PRO103 ALA104 THR105 GLU106 GLY107 ILE108 PHE109 ASP110 TYR111 ALA112 ALA113 ALA114 ILE115 GLY116 GLY117 ALA118 THR119 ILE120 THR121 ALA122 ALA123 GLN124 CYS125 LEU126 ILE127 ASP128 GLY129 MET130 CYS131 LYS132 VAL133 ALA134 ILE135 ASN136 TRP137 SER138 GLY139 GLY140 TRP141 HIS142 HIS143 ALA144 LYS145 LYS146 ASP147 GLU148 ALA149 SER150 GLY151 PHE152 CYS153 TYR154 LEU155 ASN156 ASP157 ALA158 VAL159 LEU160 GLY161 ILE162 LEU163 ARG164 LEU165 ARG166 ARG167 LYS168 PHE169 GLU170 ARG171 ILE172 LEU173 TYR174 VAL175 ASP176 LEU177 ASP178 LEU179 HIS180 HIS181 GLY182 ASP183 GLY184 VAL185 GLU186 ASP187 ALA188 PHE189 SER190 PHE191 THR192 SER193 LYS194 VAL195 MET196 THR197 VAL198 SER199 LEU200 HIS201 LYS202 PHE203 SER204 PRO205 GLY206 PHE207 PHE208 PRO209 GLY210 THR211 GLY212 ASP213 VAL214 SER215 ASP216 VAL217 GLY218 LEU219 GLY220 LYS221 GLY222 ARG223 TYR224 TYR225 SER226 VAL227 ASN228 VAL229 PRO230 ILE231 GLN232 ASP233 GLY234 ILE235 GLN236 ASP237 GLU238 LYS239 TYR240 TYR241 GLN242 ASN243 CYS244 GLU245 SER246 VAL247 LEU248 LYS249 GLU250 VAL251 TYR252 GLN253 ALA254 PHE255 ASN256 PRO257 LYS258 ALA259 VAL260 VAL261 LEU262 GLN263 LEU264 GLY265 ALA266 ASP267 THR268 ILE269 ALA270 GLY271 ASP272 PRO273 MET274 CYS275 SER276 PHE277 ASN278 MET279 THR280 PRO281 VAL282 GLY283 ILE284 GLY285 LYS286 CYS287 LEU288 LYS289 TYR290 ILE291 LEU292 GLN293 TRP294 GLN295 LEU296 ALA297 THR298 LEU299 ILE300 LEU301 GLY302 GLY303 GLY304 GLY305 PHE306 ASN307 LEU308 ALA309 ASN310 THR311 ALA312 ARG313 CYS314 TRP315 THR316 TYR317 LEU318 THR319 GLY320 VAL321 ILE322 LEU323 GLY324 LYS325 THR326 LEU327 SER328 SER329 GLU330 ILE331 PRO332 ASP333 HIS334 GLU335 PHE336 PHE337 THR338 ALA339 TYR340 GLY341 PRO342 ASP343 TYR344 VAL345 LEU346 GLU347 ILE348 THR349 PRO350 SER351 CYS352 ARG353 PRO354 ASP355 ARG356 ASN357 GLU358 PRO359 HIS360 ARG361 ILE362 GLN363 GLN364 ILE365 LEU366 ASN367 TYR368 ILE369 LYS370 GLY371 ASN372 LEU373 LYS374 HIS375 VAL376 VAL377 |
Unit 3 | ACE501 ARG502 HIS503 ALY504 ALY505 |
Unit 4 | ACE501 ARG502 HIS503 ALY504 ALY505 |
Unit 5 | ZN401 K402 K403 GOL404 |
Unit 6 | ZN401 K402 K403 |
Unit 7 | MCM601 |
Unit 8 | MCM601 GOL602 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |