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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE RAB5, RABEX-5DELTA AND RABAPTIN-5C2
Keywords RAB5, RABEX-5, RABAPTIN-5, GEF ACTIVITY, ENDOCYTOSIS, EARLY ENDOSOMES, VPS9, COILED-COIL, GEF, EFFECTOR, SMALL GTPASES
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Q9U     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAB5 GDP/GTP EXCHANGE FACTOR  A 303 2492 0
2  Protein   RAS-RELATED PROTEIN RAB-5A  B 153 1194 0
3  Protein   RAB GTPASE-BINDING EFFECTOR PROTEIN 1  C 83 667 0
4  Protein   RAB GTPASE-BINDING EFFECTOR PROTEIN 1  D 75 601 0
5  Protein   RAB5 GDP/GTP EXCHANGE FACTOR  E 296 2441 0
6  Protein   RAS-RELATED PROTEIN RAB-5A  F 120 948 0
7  Protein   RAB GTPASE-BINDING EFFECTOR PROTEIN 1  G 84 678 0
8  Protein   RAB GTPASE-BINDING EFFECTOR PROTEIN 1  H 82 658 0
total       1196 9679 0
Proteins
Unit 1 GLU134 THR135 ASP136 ARG137 VAL138 SER139 LYS140 GLU141 PHE142 ILE143 GLU144 PHE145 LEU146 LYS147 THR148 PHE149 HIS150 LYS151 THR152 GLY153 GLN154 GLU155 ILE156 TYR157 LYS158 GLN159 THR160 LYS161 LEU162 PHE163 LEU164 GLU165 GLY166 MET167 HIS168 TYR169 LYS170 ARG171 ASP172 LEU173 SER174 ILE175 GLU176 GLU177 GLN178 SER179 GLU180 CYS181 ALA182 GLN183 ASP184 PHE185 TYR186 HIS187 ASN188 VAL189 ALA190 GLU191 ARG192 MET193 GLN194 THR195 ARG196 GLY197 LYS198 PRO200 PRO201 GLU202 ARG203 VAL204 GLU205 LYS206 ILE207 MET208 ASP209 GLN210 ILE211 GLU212 LYS213 TYR214 ILE215 MET216 THR217 ARG218 LEU219 TYR220 LYS221 TYR222 VAL223 PHE224 CYS225 PRO226 GLU227 THR228 THR229 ASP230 ASP231 GLU232 LYS233 LYS234 ASP235 LEU236 ALA237 ILE238 GLN239 LYS240 ARG241 ILE242 ARG243 ALA244 LEU245 ARG246 TRP247 VAL248 THR249 PRO250 GLN251 MET252 LEU253 CYS254 VAL255 PRO256 VAL257 ASN258 GLU259 ASP260 ILE261 PRO262 GLU263 VAL264 SER265 ASP266 MET267 VAL268 VAL269 LYS270 ALA271 ILE272 THR273 ASP274 ILE275 ILE276 GLU277 MET278 ASP279 SER280 LYS281 ARG282 VAL283 PRO284 ARG285 ASP286 LYS287 LEU288 ALA289 CYS290 ILE291 THR292 LYS293 CYS294 SER295 LYS296 HIS297 ILE298 PHE299 ASN300 ALA301 ILE302 LYS303 ILE304 THR305 LYS306 ASN307 GLU308 PRO309 ALA310 SER311 ALA312 ASP313 ASP314 PHE315 LEU316 PRO317 THR318 LEU319 ILE320 TYR321 ILE322 VAL323 LEU324 LYS325 GLY326 ASN327 PRO328 PRO329 ARG330 LEU331 GLN332 SER333 ASN334 ILE335 GLN336 TYR337 ILE338 THR339 ARG340 PHE341 CYS342 ASN343 PRO344 SER345 ARG346 LEU347 MET348 THR349 GLY350 GLU351 ASP352 GLY353 TYR354 TYR355 PHE356 THR357 ASN358 LEU359 CYS360 CYS361 ALA362 VAL363 ALA364 PHE365 ILE366 GLU367 LYS368 LEU369 ASP370 ALA371 GLN372 SER373 LEU374 ASN375 LEU376 SER377 GLN378 GLU379 ASP380 PHE381 ASP382 ARG383 TYR384 MET385 SER386 GLY387 GLN388 THR389 SER390 PRO391 ARG392 LYS393 GLN394 MET395 TYR396 LYS397 ASN398 LEU399 ASP400 LEU401 LEU402 SER403 GLN404 LEU405 ASN406 GLU407 ARG408 GLN409 GLU410 ARG411 ILE412 MET413 ASN414 GLU415 ALA416 LYS417 LYS418 LEU419 GLU420 LYS421 ASP422 LEU423 ILE424 ASP425 TRP426 THR427 ASP428 GLY429 ILE430 ALA431 ARG432 GLU433 VAL434 GLN435 ASP436 ILE437
Unit 2 GLN20 PHE21 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 LEU64 ASP65 ASP66 THR67 THR68 VAL69 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 3 GLU552 THR553 ARG554 ASP555 GLN556 VAL557 LYS558 LYS559 LEU560 GLN561 LEU562 MET563 LEU564 ARG565 GLN566 ALA567 ASN568 ASP569 GLN570 LEU571 GLU572 LYS573 THR574 MET575 LYS576 ASP577 LYS578 GLN579 GLU580 LEU581 GLU582 ASP583 PHE584 ILE585 LYS586 GLN587 SER588 SER589 GLU590 ASP591 SER592 SER593 HIS594 GLN595 ILE596 SER597 ALA598 LEU599 VAL600 LEU601 ARG602 ALA603 GLN604 ALA605 SER606 GLU607 ILE608 LEU609 LEU610 GLU611 GLU612 LEU613 GLN614 GLN615 GLY616 LEU617 SER618 GLN619 ALA620 LYS621 ARG622 ASP623 VAL624 GLN625 GLU626 GLN627 MET628 ALA629 VAL630 LEU631 MET632 GLN633 SER634
Unit 4 LYS558 LYS559 LEU560 GLN561 LEU562 MET563 LEU564 ARG565 GLN566 ALA567 ASN568 ASP569 GLN570 LEU571 GLU572 LYS573 THR574 MET575 LYS576 ASP577 LYS578 GLN579 GLU580 LEU581 GLU582 ASP583 PHE584 ILE585 LYS586 GLN587 SER588 SER589 GLU590 ASP591 SER592 SER593 HIS594 GLN595 ILE596 SER597 ALA598 LEU599 VAL600 LEU601 ARG602 ALA603 GLN604 ALA605 SER606 GLU607 ILE608 LEU609 LEU610 GLU611 GLU612 LEU613 GLN614 GLN615 GLY616 LEU617 SER618 GLN619 ALA620 LYS621 ARG622 ASP623 VAL624 GLN625 GLU626 GLN627 MET628 ALA629 VAL630 LEU631 MET632
Unit 5 GLU134 THR135 ASP136 ARG137 VAL138 SER139 LYS140 GLU141 PHE142 ILE143 GLU144 PHE145 LEU146 LYS147 THR148 PHE149 HIS150 LYS151 THR152 GLY153 GLN154 GLU155 ILE156 TYR157 LYS158 GLN159 THR160 LYS161 LEU162 PHE163 LEU164 GLU165 GLY166 MET167 HIS168 TYR169 LYS170 ARG171 ASP172 LEU173 SER174 ILE175 GLU176 GLU177 GLN178 SER179 GLU180 CYS181 ALA182 GLN183 ASP184 PHE185 TYR186 HIS187 ASN188 VAL189 ALA190 GLU191 ARG192 MET193 GLN194 THR195 ARG196 GLY197 LYS198 VAL199 PRO200 PRO201 GLU202 ARG203 VAL204 GLU205 LYS206 ILE207 MET208 ASP209 GLN210 ILE211 GLU212 LYS213 TYR214 ILE215 MET216 THR217 ARG218 LEU219 TYR220 LYS221 TYR222 VAL223 PHE224 CYS225 PRO226 GLU227 THR228 THR229 ASP230 ASP231 GLU232 LYS233 LYS234 ASP235 LEU236 ALA237 ILE238 GLN239 LYS240 ARG241 ILE242 ARG243 ALA244 LEU245 ARG246 TRP247 VAL248 THR249 PRO250 GLN251 MET252 LEU253 CYS254 VAL255 PRO256 VAL257 ASN258 GLU259 ASP260 ILE261 PRO262 GLU263 VAL264 SER265 ASP266 MET267 VAL268 VAL269 LYS270 ALA271 ILE272 THR273 ASP274 ILE275 ILE276 GLU277 MET278 ASP279 SER280 LYS281 ARG282 VAL283 PRO284 ARG285 ASP286 LYS287 LEU288 ALA289 CYS290 ILE291 THR292 LYS293 CYS294 SER295 LYS296 HIS297 ILE298 PHE299 ASN300 ALA301 ILE302 LYS303 ILE304 THR305 LYS306 ASN307 GLU308 PRO309 THR318 LEU319 ILE320 TYR321 ILE322 VAL323 LEU324 LYS325 GLY326 ASN327 PRO328 PRO329 ARG330 LEU331 GLN332 SER333 ASN334 ILE335 GLN336 TYR337 ILE338 THR339 ARG340 PHE341 CYS342 ASN343 PRO344 SER345 ARG346 LEU347 MET348 THR349 GLY350 GLU351 ASP352 GLY353 TYR354 TYR355 PHE356 THR357 ASN358 LEU359 CYS360 CYS361 ALA362 VAL363 ALA364 PHE365 ILE366 GLU367 LYS368 LEU369 ASP370 ALA371 GLN372 SER373 LEU374 ASN375 LEU376 SER377 GLN378 GLU379 ASP380 PHE381 ASP382 ARG383 TYR384 MET385 SER386 GLY387 GLN388 THR389 SER390 PRO391 ARG392 LYS393 GLN394 MET395 TYR396 LYS397 ASN398 LEU399 ASP400 LEU401 LEU402 SER403 GLN404 LEU405 ASN406 GLU407 ARG408 GLN409 GLU410 ARG411 ILE412 MET413 ASN414 GLU415 ALA416 LYS417 LYS418 LEU419 GLU420 LYS421 ASP422 LEU423 ILE424 ASP425 TRP426 THR427 ASP428 GLY429 ILE430 ALA431 ARG432 GLU433 VAL434 GLN435 ASP436 ILE437
Unit 6 PHE21 LYS22 LEU23 VAL24 LEU25 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 7 GLU552 THR553 ARG554 ASP555 GLN556 VAL557 LYS558 LYS559 LEU560 GLN561 LEU562 MET563 LEU564 ARG565 GLN566 ALA567 ASN568 ASP569 GLN570 LEU571 GLU572 LYS573 THR574 MET575 LYS576 ASP577 LYS578 GLN579 GLU580 LEU581 GLU582 ASP583 PHE584 ILE585 LYS586 GLN587 SER588 SER589 GLU590 ASP591 SER592 SER593 HIS594 GLN595 ILE596 SER597 ALA598 LEU599 VAL600 LEU601 ARG602 ALA603 GLN604 ALA605 SER606 GLU607 ILE608 LEU609 LEU610 GLU611 GLU612 LEU613 GLN614 GLN615 GLY616 LEU617 SER618 GLN619 ALA620 LYS621 ARG622 ASP623 VAL624 GLN625 GLU626 GLN627 MET628 ALA629 VAL630 LEU631 MET632 GLN633 SER634 ARG635
Unit 8 THR553 ARG554 ASP555 GLN556 VAL557 LYS558 LYS559 LEU560 GLN561 LEU562 MET563 LEU564 ARG565 GLN566 ALA567 ASN568 ASP569 GLN570 LEU571 GLU572 LYS573 THR574 MET575 LYS576 ASP577 LYS578 GLN579 GLU580 LEU581 GLU582 ASP583 PHE584 ILE585 LYS586 GLN587 SER588 SER589 GLU590 ASP591 SER592 SER593 HIS594 GLN595 ILE596 SER597 ALA598 LEU599 VAL600 LEU601 ARG602 ALA603 GLN604 ALA605 SER606 GLU607 ILE608 LEU609 LEU610 GLU611 GLU612 LEU613 GLN614 GLN615 GLY616 LEU617 SER618 GLN619 ALA620 LYS621 ARG622 ASP623 VAL624 GLN625 GLU626 GLN627 MET628 ALA629 VAL630 LEU631 MET632 GLN633 SER634
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany