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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BRADYRHIZOBIUM JAPONICUM PROLINE UTILIZ (PUTA) MUTANT D778Y
Keywords PROLINE UTILIZATION A, PUTA, BETA-ALPHA BARREL, ROSSMANN FOL PROLINE DEHYDROGENASE, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGEN BINDING, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Q73     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROLINE DEHYDROGENASE  A 971 7259 0
2  Protein   PROLINE DEHYDROGENASE  B 970 7228 0
3  Ligand   PROLINE DEHYDROGENASE  A 7 0 85
4  Ligand   PROLINE DEHYDROGENASE  B 7 0 85
5 Water     419 0 419
total       2374 14487 589
Proteins
Unit 1 ASN3 ILE4 PRO5 PRO6 PRO7 PHE8 THR9 ALA10 PRO11 TYR12 ALA13 PRO14 ASP15 ASP16 ALA17 GLU18 ILE19 ALA20 ALA21 ARG22 LEU23 LEU24 PRO25 ALA26 SER27 HIS28 LEU29 SER30 PRO31 PRO32 GLN33 GLU34 ALA35 ARG36 ILE37 HIS38 ARG39 THR40 ALA41 THR42 ARG43 LEU44 ILE45 GLU46 ALA47 ILE48 ARG49 LYS50 ARG51 LEU55 GLY56 GLY57 VAL58 GLU59 ASP60 MET61 LEU62 ARG63 GLU64 PHE65 ALA66 LEU67 SER68 THR69 LYS70 GLU71 GLY72 LEU73 ALA74 LEU75 MET76 VAL77 LEU78 ALA79 GLU80 ALA81 LEU82 LEU83 ARG84 VAL85 PRO86 ASP87 ALA88 ARG89 THR90 ALA91 ASP92 GLN93 PHE94 ILE95 GLU96 ASP97 LYS98 LEU99 GLY100 GLU101 GLY102 ASP103 PHE104 ILE105 HIS106 HIS107 GLU108 THR109 LYS110 SER111 THR112 ALA113 PHE114 LEU115 VAL116 ASN117 ALA118 SER119 ALA120 TRP121 ALA122 ARG128 VAL129 ILE130 GLN131 PRO132 GLY133 GLU134 THR135 PRO136 ASP137 GLY138 THR139 ILE140 GLY141 ARG142 LEU143 VAL144 LYS145 ARG146 LEU147 GLY148 ALA149 PRO150 ALA151 VAL152 ARG153 THR154 ALA155 THR156 ARG157 GLN158 ALA159 MET160 ARG161 LEU162 MET163 GLY164 ASN165 HIS166 PHE167 VAL168 LEU169 GLY170 GLU171 THR172 ILE173 GLU174 GLN175 ALA176 LEU177 GLU178 ARG179 GLY180 LYS181 PRO182 GLY185 GLN186 LYS187 THR188 ARG189 TYR190 SER191 PHE192 ASP193 MET194 LEU195 GLY196 GLU197 GLY198 ALA199 ARG200 THR201 ALA202 ALA203 ASP204 ALA205 ARG206 ARG207 TYR208 PHE209 ASP210 ALA211 TYR212 ALA213 SER214 ALA215 ILE216 GLU217 THR218 ILE219 GLY220 LYS221 ALA222 ALA223 GLY224 ASN225 HIS226 ALA227 LEU228 PRO229 ASP230 ARG231 PRO232 GLY233 ILE234 SER235 VAL236 LYS237 LEU238 SER239 ALA240 LEU241 HIS242 PRO243 ARG244 PHE245 GLU246 ALA247 ILE248 SER249 ARG250 ALA251 ARG252 VAL253 MET254 VAL255 GLU256 LEU257 VAL258 PRO259 GLN260 LEU261 LEU262 ASP263 LEU264 ALA265 GLN266 ARG267 ALA268 LYS269 ALA270 HIS271 ASP272 LEU273 ASN274 PHE275 THR276 VAL277 ASP278 ALA279 GLU280 GLU281 ALA282 ASP283 ARG284 LEU285 GLU286 LEU287 SER288 LEU289 ASP290 VAL291 ILE292 ALA293 ALA294 THR295 LEU296 ALA297 ASP298 PRO299 SER300 LEU301 LYS302 GLY303 TRP304 ASP305 GLY306 PHE307 GLY308 LEU309 ALA310 ILE311 GLN312 ALA313 TYR314 GLN315 LYS316 ARG317 ALA318 SER319 ALA320 VAL321 ILE322 ASP323 TYR324 VAL325 ASP326 ALA327 LEU328 ALA329 ARG330 ALA331 HIS332 ASP333 ARG334 LYS335 LEU336 MET337 VAL338 ARG339 LEU340 VAL341 LYS342 GLY343 ALA344 TYR345 TRP346 ASP347 THR348 GLU349 ILE350 LYS351 ARG352 ALA353 GLN354 GLU355 ARG356 GLY357 LEU358 ASP359 GLY360 TYR361 PRO362 VAL363 PHE364 THR365 ARG366 LYS367 ALA368 MET369 THR370 ASP371 LEU372 ASN373 TYR374 VAL375 ALA376 CYS377 ALA378 SER379 LYS380 LEU381 LEU382 ALA383 LEU384 ARG385 PRO386 ARG387 ILE388 PHE389 PRO390 GLN391 PHE392 ALA393 THR394 HIS395 ASN396 ALA397 LEU398 THR399 VAL400 ALA401 THR402 VAL403 LEU404 GLU405 MET406 ALA407 GLU408 GLY409 SER410 SER411 GLY412 PHE413 GLU414 PHE415 GLN416 ARG417 LEU418 HIS419 GLY420 MET421 GLY422 GLU423 ALA424 LEU425 TYR426 GLU427 GLN428 LEU429 ALA430 LYS431 ASP432 HIS433 ALA434 ASP435 ILE436 ALA437 TYR438 ARG439 THR440 TYR441 ALA442 PRO443 VAL444 GLY445 SER446 HIS447 ARG448 ASP449 LEU450 LEU451 ALA452 TYR453 LEU454 VAL455 ARG456 ARG457 LEU458 LEU459 GLU460 ASN461 GLY462 ALA463 ASN464 SER465 SER466 PHE467 VAL468 ALA469 GLN470 ALA471 ALA472 ASP473 TYR474 ARG475 VAL476 PRO477 VAL478 PRO479 ALA480 LEU481 LEU482 GLN483 ARG484 PRO485 ALA486 ASP487 ALA488 ILE489 VAL490 ARG491 PRO492 GLN493 ALA494 ALA495 ALA496 HIS497 PRO498 ARG499 ILE500 PRO501 LEU502 PRO503 CYS504 ASP505 LEU506 PHE507 ALA508 PRO509 GLU510 ARG511 ARG512 ASN513 SER514 ARG515 GLY516 VAL517 GLU518 PHE519 GLY520 ALA521 ARG522 THR523 ALA524 LEU525 ASP526 GLN527 LEU528 LEU529 THR530 ASP531 VAL532 LYS533 ALA534 GLU535 ILE542 ALA543 ASP544 ALA545 THR546 PRO547 ASP548 GLN549 ALA550 HIS551 ALA552 ALA553 VAL554 ALA555 ALA556 ALA557 ARG558 ALA559 GLY560 PHE561 ALA562 GLY563 TRP564 SER565 ARG566 THR567 PRO568 ALA569 GLY570 ILE571 ARG572 ALA573 ALA574 ALA575 LEU576 GLU577 GLN578 ALA579 ALA580 HIS581 LEU582 LEU583 GLU584 SER585 ARG586 SER587 ALA588 HIS589 PHE590 ILE591 ALA592 LEU593 LEU594 GLN595 ARG596 GLU597 GLY598 GLY599 LYS600 THR601 LEU602 ASP603 ASP604 ALA605 LEU606 SER607 GLU608 LEU609 ARG610 GLU611 ALA612 ALA613 ASP614 PHE615 CYS616 ARG617 TYR618 TYR619 ALA620 ALA621 GLN622 GLY623 ARG624 LYS625 LEU626 PHE627 GLY628 SER629 GLU630 THR631 ALA632 MET633 PRO634 GLY635 PRO636 THR637 GLY638 GLU639 SER640 ASN641 ALA642 LEU643 THR644 MET645 ARG646 GLY647 ARG648 GLY649 VAL650 PHE651 VAL652 ALA653 ILE654 SER655 PRO656 TRP657 ASN658 PHE659 PRO660 LEU661 ALA662 ILE663 PHE664 LEU665 GLY666 GLN667 VAL668 THR669 ALA670 ALA671 LEU672 MET673 ALA674 GLY675 ASN676 SER677 VAL678 VAL679 ALA680 LYS681 PRO682 ALA683 GLU684 GLN685 THR686 PRO687 ARG688 ILE689 ALA690 ARG691 GLU692 ALA693 VAL694 ALA695 LEU696 LEU697 HIS698 GLU699 ALA700 GLY701 ILE702 PRO703 LYS704 SER705 ALA706 LEU707 TYR708 LEU709 VAL710 THR711 GLY712 ASP713 GLY714 ARG715 ILE716 GLY717 ALA718 ALA719 LEU720 THR721 ALA722 HIS723 PRO724 ASP725 ILE726 ALA727 GLY728 VAL729 VAL730 PHE731 THR732 GLY733 SER734 THR735 GLU736 VAL737 ALA738 ARG739 SER740 ILE741 ASN742 ARG743 ALA744 LEU745 ALA746 ALA747 LYS748 ASP749 GLY750 PRO751 ILE752 VAL753 PRO754 LEU755 ILE756 ALA757 GLU758 THR759 GLY760 GLY761 ILE762 ASN763 ALA764 MET765 ILE766 ALA767 ASP768 ALA769 THR770 ALA771 LEU772 PRO773 GLU774 GLN775 VAL776 ALA777 TYR778 ASP779 VAL780 VAL781 THR782 SER783 ALA784 PHE785 ARG786 SER787 ALA788 GLY789 GLN790 ARG791 CYS792 SER793 ALA794 LEU795 ARG796 LEU797 LEU798 PHE799 VAL800 GLN801 GLU802 ASP803 VAL804 ALA805 ASP806 ARG807 MET808 ILE809 GLU810 MET811 VAL812 ALA813 GLY814 ALA815 ALA816 ARG817 GLU818 LEU819 LYS820 ILE821 GLY822 ASP823 PRO824 SER825 ASP826 VAL827 ALA828 THR829 HIS830 VAL831 GLY832 PRO833 VAL834 ILE835 ASP836 VAL837 GLU838 ALA839 LYS840 GLN841 ARG842 LEU843 ASP844 ALA845 HIS846 ILE847 ALA848 ARG849 MET850 LYS851 THR852 GLU853 ALA854 ARG855 LEU856 HIS857 PHE858 ALA859 GLY860 PRO861 ALA862 PRO863 GLU864 GLY865 CYS866 PHE867 VAL868 ALA869 PRO870 HIS871 ILE872 PHE873 GLU874 LEU875 THR876 GLU877 ALA878 GLY879 GLN880 LEU881 THR882 GLU883 GLU884 VAL885 PHE886 GLY887 PRO888 ILE889 LEU890 HIS891 VAL892 VAL893 ARG894 TYR895 ARG896 PRO897 GLU898 ASN899 LEU900 GLU901 ARG902 VAL903 LEU904 ARG905 ALA906 ILE907 GLU908 ARG909 THR910 GLY911 TYR912 GLY913 LEU914 THR915 LEU916 GLY917 VAL918 HIS919 SER920 ARG921 ILE922 ASP923 ASP924 SER925 ILE926 GLU927 ALA928 ILE929 ILE930 ASP931 ARG932 VAL933 GLN934 VAL935 GLY936 ASN937 ILE938 TYR939 VAL940 ASN941 ARG942 ASN943 MET944 ILE945 GLY946 ALA947 VAL948 VAL949 GLY950 VAL951 GLN952 PRO953 PHE954 GLY955 GLY956 ASN957 GLY958 LEU959 SER960 GLY961 THR962 GLY963 PRO964 LYS965 ALA966 GLY967 GLY968 PRO969 HIS970 TYR971 LEU972 ALA973 ARG974 PHE975 ALA976 THR977 GLU978 GLN979 THR980 VAL981 THR982 ILE983 ASN984 THR985 ALA986 ALA987 ALA988 GLY989
Unit 2 ASN3 ILE4 PRO5 PRO6 PRO7 PHE8 THR9 ALA10 PRO11 TYR12 ALA13 PRO14 ASP15 ASP16 ALA17 GLU18 ILE19 ALA20 ALA21 ARG22 LEU23 LEU24 PRO25 ALA26 SER27 HIS28 LEU29 SER30 PRO31 PRO32 GLN33 GLU34 ALA35 ARG36 ILE37 HIS38 ARG39 THR40 ALA41 THR42 ARG43 LEU44 ILE45 GLU46 ALA47 ILE48 ARG49 LYS50 ARG51 LEU55 GLY56 GLY57 VAL58 GLU59 ASP60 MET61 LEU62 ARG63 GLU64 PHE65 ALA66 LEU67 SER68 THR69 LYS70 GLU71 GLY72 LEU73 ALA74 LEU75 MET76 VAL77 LEU78 ALA79 GLU80 ALA81 LEU82 LEU83 ARG84 VAL85 PRO86 ASP87 ALA88 ARG89 THR90 ALA91 ASP92 GLN93 PHE94 ILE95 GLU96 ASP97 LYS98 LEU99 GLY100 GLU101 GLY102 ASP103 PHE104 ILE105 HIS106 HIS107 GLU108 THR109 LYS110 SER111 THR112 ALA113 PHE114 LEU115 VAL116 ASN117 ALA118 SER119 ALA120 TRP121 ALA122 ARG128 VAL129 ILE130 GLN131 PRO132 GLY133 GLU134 THR135 PRO136 ASP137 GLY138 THR139 ILE140 GLY141 ARG142 LEU143 VAL144 LYS145 ARG146 LEU147 GLY148 ALA149 PRO150 ALA151 VAL152 ARG153 THR154 ALA155 THR156 ARG157 GLN158 ALA159 MET160 ARG161 LEU162 MET163 GLY164 ASN165 HIS166 PHE167 VAL168 LEU169 GLY170 GLU171 THR172 ILE173 GLU174 GLN175 ALA176 LEU177 GLU178 ARG179 GLY180 LYS181 PRO182 GLN186 LYS187 THR188 ARG189 TYR190 SER191 PHE192 ASP193 MET194 LEU195 GLY196 GLU197 GLY198 ALA199 ARG200 THR201 ALA202 ALA203 ASP204 ALA205 ARG206 ARG207 TYR208 PHE209 ASP210 ALA211 TYR212 ALA213 SER214 ALA215 ILE216 GLU217 THR218 ILE219 GLY220 LYS221 ALA222 ALA223 GLY224 ASN225 HIS226 ALA227 LEU228 PRO229 ASP230 ARG231 PRO232 GLY233 ILE234 SER235 VAL236 LYS237 LEU238 SER239 ALA240 LEU241 HIS242 PRO243 ARG244 PHE245 GLU246 ALA247 ILE248 SER249 ARG250 ALA251 ARG252 VAL253 MET254 VAL255 GLU256 LEU257 VAL258 PRO259 GLN260 LEU261 LEU262 ASP263 LEU264 ALA265 GLN266 ARG267 ALA268 LYS269 ALA270 HIS271 ASP272 LEU273 ASN274 PHE275 THR276 VAL277 ASP278 ALA279 GLU280 GLU281 ALA282 ASP283 ARG284 LEU285 GLU286 LEU287 SER288 LEU289 ASP290 VAL291 ILE292 ALA293 ALA294 THR295 LEU296 ALA297 ASP298 PRO299 SER300 LEU301 LYS302 GLY303 TRP304 ASP305 GLY306 PHE307 GLY308 LEU309 ALA310 ILE311 GLN312 ALA313 TYR314 GLN315 LYS316 ARG317 ALA318 SER319 ALA320 VAL321 ILE322 ASP323 TYR324 VAL325 ASP326 ALA327 LEU328 ALA329 ARG330 ALA331 HIS332 ASP333 ARG334 LYS335 LEU336 MET337 VAL338 ARG339 LEU340 VAL341 LYS342 GLY343 ALA344 TYR345 TRP346 ASP347 THR348 GLU349 ILE350 LYS351 ARG352 ALA353 GLN354 GLU355 ARG356 GLY357 LEU358 ASP359 GLY360 TYR361 PRO362 VAL363 PHE364 THR365 ARG366 LYS367 ALA368 MET369 THR370 ASP371 LEU372 ASN373 TYR374 VAL375 ALA376 CYS377 ALA378 SER379 LYS380 LEU381 LEU382 ALA383 LEU384 ARG385 PRO386 ARG387 ILE388 PHE389 PRO390 GLN391 PHE392 ALA393 THR394 HIS395 ASN396 ALA397 LEU398 THR399 VAL400 ALA401 THR402 VAL403 LEU404 GLU405 MET406 ALA407 GLU408 GLY409 SER410 SER411 GLY412 PHE413 GLU414 PHE415 GLN416 ARG417 LEU418 HIS419 GLY420 MET421 GLY422 GLU423 ALA424 LEU425 TYR426 GLU427 GLN428 LEU429 ALA430 LYS431 ASP432 HIS433 ALA434 ASP435 ILE436 ALA437 TYR438 ARG439 THR440 TYR441 ALA442 PRO443 VAL444 GLY445 SER446 HIS447 ARG448 ASP449 LEU450 LEU451 ALA452 TYR453 LEU454 VAL455 ARG456 ARG457 LEU458 LEU459 GLU460 ASN461 GLY462 ALA463 ASN464 SER465 SER466 PHE467 VAL468 ALA469 GLN470 ALA471 ALA472 ASP473 TYR474 ARG475 VAL476 PRO477 VAL478 PRO479 ALA480 LEU481 LEU482 GLN483 ARG484 PRO485 ALA486 ASP487 ALA488 ILE489 VAL490 ARG491 PRO492 GLN493 ALA494 ALA495 ALA496 HIS497 PRO498 ARG499 ILE500 PRO501 LEU502 PRO503 CYS504 ASP505 LEU506 PHE507 ALA508 PRO509 GLU510 ARG511 ARG512 ASN513 SER514 ARG515 GLY516 VAL517 GLU518 PHE519 GLY520 ALA521 ARG522 THR523 ALA524 LEU525 ASP526 GLN527 LEU528 LEU529 THR530 ASP531 VAL532 LYS533 ALA534 GLU535 ILE542 ALA543 ASP544 ALA545 THR546 PRO547 ASP548 GLN549 ALA550 HIS551 ALA552 ALA553 VAL554 ALA555 ALA556 ALA557 ARG558 ALA559 GLY560 PHE561 ALA562 GLY563 TRP564 SER565 ARG566 THR567 PRO568 ALA569 GLY570 ILE571 ARG572 ALA573 ALA574 ALA575 LEU576 GLU577 GLN578 ALA579 ALA580 HIS581 LEU582 LEU583 GLU584 SER585 ARG586 SER587 ALA588 HIS589 PHE590 ILE591 ALA592 LEU593 LEU594 GLN595 ARG596 GLU597 GLY598 GLY599 LYS600 THR601 LEU602 ASP603 ASP604 ALA605 LEU606 SER607 GLU608 LEU609 ARG610 GLU611 ALA612 ALA613 ASP614 PHE615 CYS616 ARG617 TYR618 TYR619 ALA620 ALA621 GLN622 GLY623 ARG624 LYS625 LEU626 PHE627 GLY628 SER629 GLU630 THR631 ALA632 MET633 PRO634 GLY635 PRO636 THR637 GLY638 GLU639 SER640 ASN641 ALA642 LEU643 THR644 MET645 ARG646 GLY647 ARG648 GLY649 VAL650 PHE651 VAL652 ALA653 ILE654 SER655 PRO656 TRP657 ASN658 PHE659 PRO660 LEU661 ALA662 ILE663 PHE664 LEU665 GLY666 GLN667 VAL668 THR669 ALA670 ALA671 LEU672 MET673 ALA674 GLY675 ASN676 SER677 VAL678 VAL679 ALA680 LYS681 PRO682 ALA683 GLU684 GLN685 THR686 PRO687 ARG688 ILE689 ALA690 ARG691 GLU692 ALA693 VAL694 ALA695 LEU696 LEU697 HIS698 GLU699 ALA700 GLY701 ILE702 PRO703 LYS704 SER705 ALA706 LEU707 TYR708 LEU709 VAL710 THR711 GLY712 ASP713 GLY714 ARG715 ILE716 GLY717 ALA718 ALA719 LEU720 THR721 ALA722 HIS723 PRO724 ASP725 ILE726 ALA727 GLY728 VAL729 VAL730 PHE731 THR732 GLY733 SER734 THR735 GLU736 VAL737 ALA738 ARG739 SER740 ILE741 ASN742 ARG743 ALA744 LEU745 ALA746 ALA747 LYS748 ASP749 GLY750 PRO751 ILE752 VAL753 PRO754 LEU755 ILE756 ALA757 GLU758 THR759 GLY760 GLY761 ILE762 ASN763 ALA764 MET765 ILE766 ALA767 ASP768 ALA769 THR770 ALA771 LEU772 PRO773 GLU774 GLN775 VAL776 ALA777 TYR778 ASP779 VAL780 VAL781 THR782 SER783 ALA784 PHE785 ARG786 SER787 ALA788 GLY789 GLN790 ARG791 CYS792 SER793 ALA794 LEU795 ARG796 LEU797 LEU798 PHE799 VAL800 GLN801 GLU802 ASP803 VAL804 ALA805 ASP806 ARG807 MET808 ILE809 GLU810 MET811 VAL812 ALA813 GLY814 ALA815 ALA816 ARG817 GLU818 LEU819 LYS820 ILE821 GLY822 ASP823 PRO824 SER825 ASP826 VAL827 ALA828 THR829 HIS830 VAL831 GLY832 PRO833 VAL834 ILE835 ASP836 VAL837 GLU838 ALA839 LYS840 GLN841 ARG842 LEU843 ASP844 ALA845 HIS846 ILE847 ALA848 ARG849 MET850 LYS851 THR852 GLU853 ALA854 ARG855 LEU856 HIS857 PHE858 ALA859 GLY860 PRO861 ALA862 PRO863 GLU864 GLY865 CYS866 PHE867 VAL868 ALA869 PRO870 HIS871 ILE872 PHE873 GLU874 LEU875 THR876 GLU877 ALA878 GLY879 GLN880 LEU881 THR882 GLU883 GLU884 VAL885 PHE886 GLY887 PRO888 ILE889 LEU890 HIS891 VAL892 VAL893 ARG894 TYR895 ARG896 PRO897 GLU898 ASN899 LEU900 GLU901 ARG902 VAL903 LEU904 ARG905 ALA906 ILE907 GLU908 ARG909 THR910 GLY911 TYR912 GLY913 LEU914 THR915 LEU916 GLY917 VAL918 HIS919 SER920 ARG921 ILE922 ASP923 ASP924 SER925 ILE926 GLU927 ALA928 ILE929 ILE930 ASP931 ARG932 VAL933 GLN934 VAL935 GLY936 ASN937 ILE938 TYR939 VAL940 ASN941 ARG942 ASN943 MET944 ILE945 GLY946 ALA947 VAL948 VAL949 GLY950 VAL951 GLN952 PRO953 PHE954 GLY955 GLY956 ASN957 GLY958 LEU959 SER960 GLY961 THR962 GLY963 PRO964 LYS965 ALA966 GLY967 GLY968 PRO969 HIS970 TYR971 LEU972 ALA973 ARG974 PHE975 ALA976 THR977 GLU978 GLN979 THR980 VAL981 THR982 ILE983 ASN984 THR985 ALA986 ALA987 ALA988 GLY989
Ligands
Unit 3 FAD2001 SO42002 SO42003 SO42004 SO42005 GOL2006 GOL2007
Unit 4 FAD1001 SO41002 SO41003 SO41004 SO41005 GOL1006 GOL1007
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany