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| Title | CRYSTAL STRUCTURE OF HUMAN SPHINGOSINE-1-PHOSPHATE LYASE IN WITH INHIBITOR 6-[(2R)-4-(4-BENZYL-7-CHLOROPHTHALAZIN-1-YL) METHYLPIPERAZIN-1-YL]PYRIDINE-3-CARBONITRILE | |
| Keywords | PLP, PYRIDOXAL 5-PHOSPHATE-DEPENDENT ENZYMES, LYASE-LYASE IN COMPLEX | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4Q6R | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | SPHINGOSINE-1-PHOSPHATE LYASE 1 | A | 443 | 3425 | 24 |
| 2 | Protein | SPHINGOSINE-1-PHOSPHATE LYASE 1 | B | 444 | 3434 | 24 |
| 3 | Ligand | SPHINGOSINE-1-PHOSPHATE LYASE 1 | A | 3 | 0 | 47 |
| 4 | Ligand | SPHINGOSINE-1-PHOSPHATE LYASE 1 | B | 2 | 0 | 38 |
| 5 | Water | 344 | 0 | 344 | ||
| total | 1236 | 6859 | 477 |
| Unit 1 | GLU111 TYR112 VAL113 LYS114 ALA115 LEU116 PRO117 SER118 GLN119 GLY120 LEU121 SER122 SER123 SER124 ALA125 VAL126 LEU127 GLU128 LYS129 LEU130 LYS131 GLU132 TYR133 SER134 SER135 MET136 ASP137 ALA138 PHE139 TRP140 GLN141 GLU142 GLY143 ARG144 ALA145 SER146 GLY147 THR148 VAL149 TYR150 SER151 GLY152 GLU153 GLU154 LYS155 LEU156 THR157 GLU158 LEU159 LEU160 VAL161 LYS162 ALA163 TYR164 GLY165 ASP166 PHE167 ALA168 TRP169 SER170 ASN171 PRO172 LEU173 HIS174 PRO175 ASP176 ILE177 PHE178 PRO179 GLY180 LEU181 ARG182 LYS183 ILE184 GLU185 ALA186 GLU187 ILE188 VAL189 ARG190 ILE191 ALA192 CYS193 SER194 LEU195 PHE196 ASN197 GLY198 GLY199 PRO200 ASP201 SER202 CYS203 GLY204 CYS205 VAL206 THR207 SER208 GLY209 GLY210 THR211 GLU212 SER213 ILE214 LEU215 MET216 ALA217 CYS218 LYS219 ALA220 TYR221 ARG222 ASP223 LEU224 ALA225 PHE226 GLU227 LYS228 GLY229 ILE230 LYS231 THR232 PRO233 GLU234 ILE235 VAL236 ALA237 PRO238 GLN239 SER240 ALA241 HIS242 ALA243 ALA244 PHE245 ASN246 LYS247 ALA248 ALA249 SER250 TYR251 PHE252 GLY253 MET254 LYS255 ILE256 VAL257 ARG258 VAL259 PRO260 LEU261 THR262 LYS263 MET264 MET265 GLU266 VAL267 ASP268 VAL269 ARG270 ALA271 MET272 ARG273 ARG274 ALA275 ILE276 SER277 ARG278 ASN279 THR280 ALA281 MET282 LEU283 VAL284 CYS285 SER286 THR287 PRO288 GLN289 PHE290 PRO291 HIS292 GLY293 VAL294 ILE295 ASP296 PRO297 VAL298 PRO299 GLU300 VAL301 ALA302 LYS303 LEU304 ALA305 VAL306 LYS307 TYR308 LYS309 ILE310 PRO311 LEU312 HIS313 VAL314 ASP315 ALA316 CYS317 LEU318 GLY319 GLY320 PHE321 LEU322 ILE323 VAL324 PHE325 MET326 GLU327 LYS328 ALA329 GLY330 TYR331 PRO332 LEU333 GLU334 HIS335 PRO336 PHE337 ASP338 PHE339 ARG340 VAL341 LYS342 GLY343 VAL344 THR345 SER346 ILE347 SER348 ALA349 ASP350 THR351 HIS352 LLP353 TYR354 GLY355 TYR356 ALA357 PRO358 LYS359 GLY360 SER361 SER362 LEU363 VAL364 LEU365 TYR366 SER367 ASP368 LYS369 LYS370 TYR371 ARG372 ASN373 TYR374 GLN375 PHE376 PHE377 VAL378 ASP379 THR380 ASP381 TRP382 GLN383 GLY384 GLY385 ILE386 TYR387 ALA388 SER389 PRO390 THR391 ILE392 ALA393 GLY394 SER395 ARG396 PRO397 GLY398 GLY399 ILE400 SER401 ALA402 ALA403 CYS404 TRP405 ALA406 ALA407 LEU408 MET409 HIS410 PHE411 GLY412 GLU413 ASN414 GLY415 TYR416 VAL417 GLU418 ALA419 THR420 LYS421 GLN422 ILE423 ILE424 LYS425 THR426 ALA427 ARG428 PHE429 LEU430 LYS431 SER432 GLU433 LEU434 GLU435 ASN436 ILE437 LYS438 GLY439 ILE440 PHE441 VAL442 PHE443 GLY444 ASN445 PRO446 GLN447 LEU448 SER449 VAL450 ILE451 ALA452 LEU453 GLY454 SER455 ARG456 ASP457 PHE458 ASP459 ILE460 TYR461 ARG462 LEU463 SER464 ASN465 LEU466 MET467 THR468 ALA469 LYS470 GLY471 TRP472 ASN473 LEU474 ASN475 GLN476 LEU477 GLN478 PHE479 PRO480 PRO481 SER482 ILE483 HIS484 PHE485 CYS486 ILE487 THR488 LEU489 LEU490 HIS491 ALA492 ARG493 LYS494 ARG495 VAL496 ALA497 ILE498 GLN499 PHE500 LEU501 LYS502 ASP503 ILE504 ARG505 GLU506 SER507 VAL508 THR509 GLN510 ILE511 MET512 LYS513 ASN514 PRO515 LYS516 ALA517 LYS518 THR519 THR520 GLY521 MET522 GLY523 ALA524 ILE525 TYR526 GLY527 MET528 ALA529 GLN530 THR531 THR532 VAL533 ASP534 ARG535 ASN536 MET537 VAL538 ALA539 GLU540 LEU541 SER542 SER543 VAL544 PHE545 LEU546 ASP547 SER548 LEU549 TYR550 SER551 THR552 ASP553 |
| Unit 2 | LYS110 GLU111 TYR112 VAL113 LYS114 ALA115 LEU116 PRO117 SER118 GLN119 GLY120 LEU121 SER122 SER123 SER124 ALA125 VAL126 LEU127 GLU128 LYS129 LEU130 LYS131 GLU132 TYR133 SER134 SER135 MET136 ASP137 ALA138 PHE139 TRP140 GLN141 GLU142 GLY143 ARG144 ALA145 SER146 GLY147 THR148 VAL149 TYR150 SER151 GLY152 GLU153 GLU154 LYS155 LEU156 THR157 GLU158 LEU159 LEU160 VAL161 LYS162 ALA163 TYR164 GLY165 ASP166 PHE167 ALA168 TRP169 SER170 ASN171 PRO172 LEU173 HIS174 PRO175 ASP176 ILE177 PHE178 PRO179 GLY180 LEU181 ARG182 LYS183 ILE184 GLU185 ALA186 GLU187 ILE188 VAL189 ARG190 ILE191 ALA192 CYS193 SER194 LEU195 PHE196 ASN197 GLY198 GLY199 PRO200 ASP201 SER202 CYS203 GLY204 CYS205 VAL206 THR207 SER208 GLY209 GLY210 THR211 GLU212 SER213 ILE214 LEU215 MET216 ALA217 CYS218 LYS219 ALA220 TYR221 ARG222 ASP223 LEU224 ALA225 PHE226 GLU227 LYS228 GLY229 ILE230 LYS231 THR232 PRO233 GLU234 ILE235 VAL236 ALA237 PRO238 GLN239 SER240 ALA241 HIS242 ALA243 ALA244 PHE245 ASN246 LYS247 ALA248 ALA249 SER250 TYR251 PHE252 GLY253 MET254 LYS255 ILE256 VAL257 ARG258 VAL259 PRO260 LEU261 THR262 LYS263 MET264 MET265 GLU266 VAL267 ASP268 VAL269 ARG270 ALA271 MET272 ARG273 ARG274 ALA275 ILE276 SER277 ARG278 ASN279 THR280 ALA281 MET282 LEU283 VAL284 CYS285 SER286 THR287 PRO288 GLN289 PHE290 PRO291 HIS292 GLY293 VAL294 ILE295 ASP296 PRO297 VAL298 PRO299 GLU300 VAL301 ALA302 LYS303 LEU304 ALA305 VAL306 LYS307 TYR308 LYS309 ILE310 PRO311 LEU312 HIS313 VAL314 ASP315 ALA316 CYS317 LEU318 GLY319 GLY320 PHE321 LEU322 ILE323 VAL324 PHE325 MET326 GLU327 LYS328 ALA329 GLY330 TYR331 PRO332 LEU333 GLU334 HIS335 PRO336 PHE337 ASP338 PHE339 ARG340 VAL341 LYS342 GLY343 VAL344 THR345 SER346 ILE347 SER348 ALA349 ASP350 THR351 HIS352 LLP353 TYR354 GLY355 TYR356 ALA357 PRO358 LYS359 GLY360 SER361 SER362 LEU363 VAL364 LEU365 TYR366 SER367 ASP368 LYS369 LYS370 TYR371 ARG372 ASN373 TYR374 GLN375 PHE376 PHE377 VAL378 ASP379 THR380 ASP381 TRP382 GLN383 GLY384 GLY385 ILE386 TYR387 ALA388 SER389 PRO390 THR391 ILE392 ALA393 GLY394 SER395 ARG396 PRO397 GLY398 GLY399 ILE400 SER401 ALA402 ALA403 CYS404 TRP405 ALA406 ALA407 LEU408 MET409 HIS410 PHE411 GLY412 GLU413 ASN414 GLY415 TYR416 VAL417 GLU418 ALA419 THR420 LYS421 GLN422 ILE423 ILE424 LYS425 THR426 ALA427 ARG428 PHE429 LEU430 LYS431 SER432 GLU433 LEU434 GLU435 ASN436 ILE437 LYS438 GLY439 ILE440 PHE441 VAL442 PHE443 GLY444 ASN445 PRO446 GLN447 LEU448 SER449 VAL450 ILE451 ALA452 LEU453 GLY454 SER455 ARG456 ASP457 PHE458 ASP459 ILE460 TYR461 ARG462 LEU463 SER464 ASN465 LEU466 MET467 THR468 ALA469 LYS470 GLY471 TRP472 ASN473 LEU474 ASN475 GLN476 LEU477 GLN478 PHE479 PRO480 PRO481 SER482 ILE483 HIS484 PHE485 CYS486 ILE487 THR488 LEU489 LEU490 HIS491 ALA492 ARG493 LYS494 ARG495 VAL496 ALA497 ILE498 GLN499 PHE500 LEU501 LYS502 ASP503 ILE504 ARG505 GLU506 SER507 VAL508 THR509 GLN510 ILE511 MET512 LYS513 ASN514 PRO515 LYS516 ALA517 LYS518 THR519 THR520 GLY521 MET522 GLY523 ALA524 ILE525 TYR526 GLY527 MET528 ALA529 GLN530 THR531 THR532 VAL533 ASP534 ARG535 ASN536 MET537 VAL538 ALA539 GLU540 LEU541 SER542 SER543 VAL544 PHE545 LEU546 ASP547 SER548 LEU549 TYR550 SER551 THR552 ASP553 |
| Unit 3 | SIN901 GOL902 30J903 |
| Unit 4 | PO4601 30J602 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |