4PY8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF FAB 3.1 IN COMPLEX WITH THE 1918 INFLUE HEMAGGLUTININ
• Keywords: HEMAGGLUTININ GLYCOPROTEINS, IMMUNOGLOBULIN FAB FRAGMENT, ME FUSION, NEUTRALIZING ANTIBODIES, VIRAL PROTEIN-IMMUNE SYSTE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4PY8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HEMAGGLUTININ HA1 CHAIN	A	328	2528	0
2	Protein	HEMAGGLUTININ HA2 CHAIN	B	171	1371	0
3	Protein	ANTIBODY 3.1 HEAVY CHAIN	I	219	1644	0
4	Protein	ANTIBODY 3.1 LIGHT CHAIN	J	212	1604	0
5	Ligand		C	2	0	28
6	Ligand	HEMAGGLUTININ HA1 CHAIN	A	2	0	28
7	Ligand	ANTIBODY 3.1 HEAVY CHAIN	I	1	0	7
8	Ligand	ANTIBODY 3.1 LIGHT CHAIN	J	1	0	7
total				936	7147	70

Proteins

Unit 1	ALA 7 ASP 8 PRO 9 GLY 10 ASP 11 THR 12 ILE 13 CYS 14 ILE 15 GLY 16 TYR 17 HIS 18 ALA 19 ASN 20 ASN 21 SER 22 THR 23 ASP 24 THR 25 VAL 26 ASP 27 THR 28 VAL 29 LEU 30 GLU 31 LYS 32 ASN 33 VAL 34 THR 35 VAL 36 THR 37 HIS 38 SER 39 VAL 40 ASN 41 LEU 42 LEU 43 GLU 44 ASP 45 SER 46 HIS 47 ASN 48 GLY 49 LYS 50 LEU 51 CYS 52 LYS 53 LEU 54 LYS 55 GLY 56 ILE 57 ALA 58 PRO 59 LEU 60 GLN 61 LEU 62 GLY 63 LYS 64 CYS 65 ASN 66 ILE 67 ALA 68 GLY 69 TRP 70 LEU 71 LEU 72 GLY 73 ASN 74 PRO 75 GLU 76 CYS 77 ASP 78 LEU 79 LEU 80 LEU 81 THR 82 ALA 83 SER 84 SER 85 TRP 86 SER 87 TYR 88 ILE 89 VAL 90 GLU 91 THR 92 SER 93 ASN 94 SER 95 GLU 96 ASN 97 GLY 98 THR 99 CYS 100 TYR 101 PRO 102 GLY 103 ASP 104 PHE 105 ILE 106 ASP 107 TYR 108 GLU 109 GLU 110 LEU 111 ARG 112 GLU 113 GLN 114 LEU 115 SER 116 SER 117 VAL 118 SER 119 SER 120 PHE 121 GLU 122 LYS 123 PHE 124 GLU 125 ILE 126 PHE 127 PRO 128 LYS 129 THR 130 SER 131 SER 132 TRP 133 PRO 134 ASN 135 HIS 136 GLU 137 THR 138 THR 139 LYS 140 GLY 141 VAL 142 THR 143 ALA 144 ALA 145 CYS 146 SER 147 TYR 148 ALA 149 GLY 150 ALA 151 SER 152 SER 153 PHE 154 TYR 155 ARG 156 ASN 157 LEU 158 LEU 159 TRP 160 LEU 161 THR 162 LYS 163 LYS 164 GLY 165 SER 166 SER 167 TYR 168 PRO 169 LYS 170 LEU 171 SER 172 LYS 173 SER 174 TYR 175 VAL 176 ASN 177 ASN 178 LYS 179 GLY 180 LYS 181 GLU 182 VAL 183 LEU 184 VAL 185 LEU 186 TRP 187 GLY 188 VAL 189 HIS 190 HIS 191 PRO 192 PRO 193 THR 194 GLY 195 THR 196 ASP 197 GLN 198 GLN 199 SER 200 LEU 201 TYR 202 GLN 203 ASN 204 ALA 205 ASP 206 ALA 207 TYR 208 VAL 209 SER 210 VAL 211 GLY 212 SER 213 SER 214 LYS 215 TYR 216 ASN 217 ARG 218 ARG 219 PHE 220 THR 221 PRO 222 GLU 223 ILE 224 ALA 225 ALA 226 ARG 227 PRO 228 LYS 229 VAL 230 ARG 231 ASP 232 GLN 233 ALA 234 GLY 235 ARG 236 MET 237 ASN 238 TYR 239 TYR 240 TRP 241 THR 242 LEU 243 LEU 244 GLU 245 PRO 246 GLY 247 ASP 248 THR 249 ILE 250 THR 251 PHE 252 GLU 253 ALA 254 THR 255 GLY 256 ASN 257 LEU 258 ILE 259 ALA 260 PRO 261 TRP 262 TYR 263 ALA 264 PHE 265 ALA 266 LEU 267 ASN 268 ARG 269 GLY 270 SER 271 GLY 272 SER 273 GLY 274 ILE 275 ILE 276 THR 277 SER 278 ASP 279 ALA 280 PRO 281 VAL 282 HIS 283 ASP 284 CYS 285 ASN 286 THR 287 LYS 288 CYS 289 GLN 290 THR 291 PRO 292 HIS 293 GLY 294 ALA 295 ILE 296 ASN 297 SER 298 SER 299 LEU 300 PRO 301 PHE 302 GLN 303 ASN 304 ILE 305 HIS 306 PRO 307 VAL 308 THR 309 ILE 310 GLY 311 GLU 312 CYS 313 PRO 314 LYS 315 TYR 316 VAL 317 ARG 318 SER 319 THR 320 LYS 321 LEU 322 ARG 323 MET 324 ALA 325 THR 326 GLY 327 LEU 328 ARG 329 ASN 330 ILE 331 PRO 332 SER 333 ILE 334
Unit 2	GLY 1 LEU 2 PHE 3 GLY 4 ALA 5 ILE 6 ALA 7 GLY 8 PHE 9 ILE 10 GLU 11 GLY 12 GLY 13 TRP 14 THR 15 GLY 16 MET 17 ILE 18 ASP 19 GLY 20 TRP 21 TYR 22 GLY 23 TYR 24 HIS 25 HIS 26 GLN 27 ASN 28 GLU 29 GLN 30 GLY 31 SER 32 GLY 33 TYR 34 ALA 35 ALA 36 ASP 37 GLN 38 LYS 39 SER 40 THR 41 GLN 42 ASN 43 ALA 44 ILE 45 ASP 46 GLY 47 ILE 48 THR 49 ASN 50 LYS 51 VAL 52 ASN 53 SER 54 VAL 55 ILE 56 GLU 57 LYS 58 MET 59 ASN 60 THR 61 GLN 62 ALA 65 VAL 66 GLY 67 LYS 68 GLU 69 PHE 70 ASN 71 ASN 72 LEU 73 GLU 74 ARG 75 ARG 76 ILE 77 GLU 78 ASN 79 LEU 80 ASN 81 LYS 82 LYS 83 VAL 84 ASP 85 ASP 86 GLY 87 PHE 88 LEU 89 ASP 90 ILE 91 TRP 92 THR 93 TYR 94 ASN 95 ALA 96 GLU 97 LEU 98 LEU 99 VAL 100 LEU 101 LEU 102 GLU 103 ASN 104 GLU 105 ARG 106 THR 107 LEU 108 ASP 109 PHE 110 HIS 111 ASP 112 SER 113 ASN 114 VAL 115 ARG 116 ASN 117 LEU 118 TYR 119 GLU 120 LYS 121 VAL 122 LYS 123 SER 124 GLN 125 LEU 126 LYS 127 ASN 128 ASN 129 ALA 130 LYS 131 GLU 132 ILE 133 GLY 134 ASN 135 GLY 136 CYS 137 PHE 138 GLU 139 PHE 140 TYR 141 HIS 142 LYS 143 CYS 144 ASP 145 ASP 146 ALA 147 CYS 148 MET 149 GLU 150 SER 151 VAL 152 ARG 153 ASN 154 GLY 155 THR 156 TYR 157 ASP 158 TYR 159 PRO 160 LYS 161 TYR 162 SER 163 GLU 164 GLU 165 SER 166 LYS 167 LEU 168 ASN 169 ARG 170 GLU 171 GLU 172 ILE 173
Unit 3	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 GLY 9 GLY 10 VAL 11 VAL 12 GLN 13 PRO 14 GLY 15 ARG 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLU 26 PHE 27 THR 28 PHE 29 ARG 30 MET 31 TYR 32 ALA 33 THR 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 LEU 50 ILE 51 SER 52 TYR 53 ASP 54 GLY 55 SER 56 ASN 57 LYS 58 TYR 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 SER 75 MET 76 ASN 77 THR 78 VAL 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 THR 85 LEU 86 ARG 87 PRO 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ASP 99 LEU 100 GLY 101 GLY 102 TYR 103 PHE 104 ILE 105 ARG 106 GLY 107 ILE 108 MET 109 ASP 110 VAL 111 TRP 112 GLY 113 GLN 114 GLY 115 THR 116 LEU 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 SER 124 THR 125 LYS 126 GLY 127 PRO 128 SER 129 VAL 130 PHE 131 PRO 132 LEU 133 ALA 134 PRO 135 SER 136 SER 137 GLY 138 GLY 139 THR 140 ALA 141 ALA 142 LEU 143 GLY 144 CYS 145 LEU 146 VAL 147 LYS 148 ASP 149 TYR 150 PHE 151 PRO 152 GLU 153 PRO 154 VAL 155 THR 156 VAL 157 SER 158 TRP 159 ASN 160 SER 161 GLY 162 ALA 163 LEU 164 THR 165 SER 166 GLY 167 VAL 168 HIS 169 THR 170 PHE 171 PRO 172 ALA 173 VAL 174 LEU 175 GLN 176 SER 177 SER 178 GLY 179 LEU 180 TYR 181 SER 182 LEU 183 SER 184 SER 185 VAL 186 VAL 187 THR 188 VAL 189 PRO 190 SER 191 SER 192 SER 193 LEU 194 GLY 195 THR 196 GLN 197 THR 198 TYR 199 ILE 200 CYS 201 ASN 202 VAL 203 ASN 204 HIS 205 LYS 206 PRO 207 SER 208 ASN 209 THR 210 LYS 211 VAL 212 ASP 213 LYS 214 ARG 215 VAL 216 GLU 217 PRO 218 LYS 219
Unit 4	GLU 1 LEU 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 VAL 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 GLY 28 ILE 29 SER 30 SER 31 TRP 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ALA 50 ALA 51 SER 52 SER 53 LEU 54 GLN 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 ALA 91 ASN 92 SER 93 PHE 94 PRO 95 LEU 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212

Ligands

Unit 5	NAG 1 NAG 2
Unit 6	NAG 401 NAG 404
Unit 7	MLI 301
Unit 8	MLI 301