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| Title | CRYSTAL STRUCTURE OF HOMO SAPIENS HOLO SERINE HYDROXYMETHYLT 2 (MITOCHONDRIAL) (SHMT2), ISOFORM 3, TRANSCRIPT VARIANT 5, AT 2.6 ANG. RESOLUTION | |
| Keywords | HYDROXYMETHYLTRANSFERASE, AAT-LIKE FOLD, ONE CARBON METABOLI TRANSFERASE, 5-FORMYL-THF, METHYLASE, MITOCHONDRIAL | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4PVF | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL | A | 454 | 3537 | 24 |
| 2 | Protein | SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL | B | 447 | 3488 | 24 |
| 3 | Ligand | SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL | A | 2 | 0 | 13 |
| 4 | Ligand | SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL | B | 1 | 0 | 6 |
| 5 | Water | 126 | 0 | 126 | ||
| total | 1030 | 7025 | 193 |
| Unit 1 | TRP22 THR23 GLY24 GLN25 GLU26 SER27 LEU28 SER29 ASP30 SER31 ASP32 PRO33 GLU34 MET35 TRP36 GLU37 LEU38 LEU39 GLN40 ARG41 GLU42 LYS43 ASP44 ARG45 GLN46 CYS47 ARG48 GLY49 LEU50 GLU51 LEU52 ILE53 ALA54 SER55 GLU56 ASN57 PHE58 CYS59 SER60 ARG61 ALA62 ALA63 LEU64 GLU65 ALA66 LEU67 GLY68 SER69 CYS70 LEU71 ASN72 ASN73 LYS74 TYR75 SER76 GLU77 GLY78 TYR79 PRO80 GLY81 LYS82 ARG83 TYR84 TYR85 GLY86 GLY87 ALA88 GLU89 VAL90 VAL91 ASP92 GLU93 ILE94 GLU95 LEU96 LEU97 CYS98 GLN99 ARG100 ARG101 ALA102 LEU103 GLU104 ALA105 PHE106 ASP107 LEU108 ASP109 PRO110 ALA111 GLN112 TRP113 GLY114 VAL115 ASN116 VAL117 GLN118 PRO119 TYR120 SER121 GLY122 SER123 PRO124 ALA125 ASN126 LEU127 ALA128 VAL129 TYR130 THR131 ALA132 LEU133 LEU134 GLN135 PRO136 HIS137 ASP138 ARG139 ILE140 MET141 GLY142 LEU143 ASP144 LEU145 PRO146 ASP147 GLY148 GLY149 HIS150 LEU151 THR152 HIS153 GLY154 TYR155 MET156 SER157 ASP158 VAL159 LYS160 ARG161 ILE162 SER163 ALA164 THR165 SER166 ILE167 PHE168 PHE169 GLU170 SER171 MET172 PRO173 TYR174 LYS175 LEU176 ASN177 PRO178 LYS179 THR180 GLY181 LEU182 ILE183 ASP184 TYR185 ASN186 GLN187 LEU188 ALA189 LEU190 THR191 ALA192 ARG193 LEU194 PHE195 ARG196 PRO197 ARG198 LEU199 ILE200 ILE201 ALA202 GLY203 THR204 SER205 ALA206 TYR207 ALA208 ARG209 LEU210 ILE211 ASP212 TYR213 ALA214 ARG215 MET216 ARG217 GLU218 VAL219 CYS220 ASP221 GLU222 VAL223 LYS224 ALA225 HIS226 LEU227 LEU228 ALA229 ASP230 MET231 ALA232 HIS233 ILE234 SER235 GLY236 LEU237 VAL238 ALA239 ALA240 LYS241 VAL242 ILE243 PRO244 SER245 PRO246 PHE247 LYS248 HIS249 ALA250 ASP251 ILE252 VAL253 THR254 THR255 THR256 THR257 HIS258 LLP259 THR260 LEU261 ARG262 GLY263 ALA264 ARG265 SER266 GLY267 LEU268 ILE269 PHE270 TYR271 ARG272 LYS273 GLY274 VAL275 LYS276 ALA277 ILE286 PRO287 TYR288 THR289 PHE290 GLU291 ASP292 ARG293 ILE294 ASN295 PHE296 ALA297 VAL298 PHE299 PRO300 SER301 LEU302 GLN303 GLY304 GLY305 PRO306 HIS307 ASN308 HIS309 ALA310 ILE311 ALA312 ALA313 VAL314 ALA315 VAL316 ALA317 LEU318 LYS319 GLN320 ALA321 CYS322 THR323 PRO324 MET325 PHE326 ARG327 GLU328 TYR329 SER330 LEU331 GLN332 VAL333 LEU334 LYS335 ASN336 ALA337 ARG338 ALA339 MET340 ALA341 ASP342 ALA343 LEU344 LEU345 GLU346 ARG347 GLY348 TYR349 SER350 LEU351 VAL352 SER353 GLY354 GLY355 THR356 ASP357 ASN358 HIS359 LEU360 VAL361 LEU362 VAL363 ASP364 LEU365 ARG366 PRO367 LYS368 GLY369 LEU370 ASP371 GLY372 ALA373 ARG374 ALA375 GLU376 ARG377 VAL378 LEU379 GLU380 LEU381 VAL382 SER383 ILE384 THR385 ALA386 ASN387 LYS388 ASN389 THR390 CYS391 PRO392 GLY393 ASP394 ARG395 SER396 ALA397 ILE398 THR399 PRO400 GLY401 GLY402 LEU403 ARG404 LEU405 GLY406 ALA407 PRO408 ALA409 LEU410 THR411 SER412 ARG413 GLN414 PHE415 ARG416 GLU417 ASP418 ASP419 PHE420 ARG421 ARG422 VAL423 VAL424 ASP425 PHE426 ILE427 ASP428 GLU429 GLY430 VAL431 ASN432 ILE433 GLY434 LEU435 GLU436 VAL437 LYS438 SER439 LYS440 THR441 ALA442 LYS443 LEU444 GLN445 ASP446 PHE447 LYS448 SER449 PHE450 LEU451 LEU452 LYS453 ASP454 SER455 GLU456 THR457 SER458 GLN459 ARG460 LEU461 ALA462 ASN463 LEU464 ARG465 GLN466 ARG467 VAL468 GLU469 GLN470 PHE471 ALA472 ARG473 ALA474 PHE475 PRO476 MET477 PRO478 GLY479 PHE480 ASP481 GLU482 HIS483 |
| Unit 2 | TRP22 THR23 GLY24 GLN25 GLU26 SER27 LEU28 SER29 ASP30 SER31 ASP32 PRO33 GLU34 MET35 TRP36 GLU37 LEU38 LEU39 GLN40 ARG41 GLU42 LYS43 ASP44 ARG45 GLN46 CYS47 ARG48 GLY49 LEU50 GLU51 LEU52 ILE53 ALA54 SER55 GLU56 ASN57 PHE58 CYS59 SER60 ARG61 ALA62 ALA63 LEU64 GLU65 ALA66 LEU67 GLY68 SER69 CYS70 LEU71 ASN72 ASN73 LYS74 TYR75 SER76 GLU77 GLY78 TYR79 PRO80 GLY81 LYS82 ARG83 TYR84 TYR85 GLY86 GLY87 ALA88 GLU89 VAL90 VAL91 ASP92 GLU93 ILE94 GLU95 LEU96 LEU97 CYS98 GLN99 ARG100 ARG101 ALA102 LEU103 GLU104 ALA105 PHE106 ASP107 LEU108 ASP109 PRO110 ALA111 GLN112 TRP113 GLY114 VAL115 ASN116 VAL117 GLN118 PRO119 TYR120 SER121 GLY122 SER123 PRO124 ALA125 ASN126 LEU127 ALA128 VAL129 TYR130 THR131 ALA132 LEU133 LEU134 GLN135 PRO136 HIS137 ASP138 ARG139 ILE140 MET141 GLY142 LEU143 ASP144 LEU145 PRO146 ASP147 GLY148 GLY149 HIS150 LEU151 THR152 HIS153 GLY154 TYR155 MET156 SER157 ASP158 VAL159 LYS160 ARG161 ILE162 SER163 ALA164 THR165 SER166 ILE167 PHE168 PHE169 GLU170 SER171 MET172 PRO173 TYR174 LYS175 LEU176 ASN177 PRO178 LYS179 THR180 GLY181 LEU182 ILE183 ASP184 TYR185 ASN186 GLN187 LEU188 ALA189 LEU190 THR191 ALA192 ARG193 LEU194 PHE195 ARG196 PRO197 ARG198 LEU199 ILE200 ILE201 ALA202 GLY203 THR204 SER205 ALA206 TYR207 ALA208 ARG209 LEU210 ILE211 ASP212 TYR213 ALA214 ARG215 MET216 ARG217 GLU218 VAL219 CYS220 ASP221 GLU222 VAL223 LYS224 ALA225 HIS226 LEU227 LEU228 ALA229 ASP230 MET231 ALA232 HIS233 ILE234 SER235 GLY236 LEU237 VAL238 ALA239 ALA240 LYS241 VAL242 ILE243 PRO244 SER245 PRO246 PHE247 LYS248 HIS249 ALA250 ASP251 ILE252 VAL253 THR254 THR255 THR256 THR257 HIS258 LLP259 THR260 LEU261 ARG262 GLY263 ALA264 ARG265 SER266 GLY267 LEU268 ILE269 PHE270 TYR271 ARG272 LYS273 GLY274 VAL275 LYS276 ALA277 ILE286 PRO287 TYR288 THR289 PHE290 GLU291 ASP292 ARG293 ILE294 ASN295 PHE296 ALA297 VAL298 PHE299 PRO300 SER301 LEU302 GLN303 GLY304 GLY305 PRO306 HIS307 ASN308 HIS309 ALA310 ILE311 ALA312 ALA313 VAL314 ALA315 VAL316 ALA317 LEU318 LYS319 GLN320 ALA321 CYS322 THR323 PRO324 MET325 PHE326 ARG327 GLU328 TYR329 SER330 LEU331 GLN332 VAL333 LEU334 LYS335 ASN336 ALA337 ARG338 ALA339 MET340 ALA341 ASP342 ALA343 LEU344 LEU345 GLU346 ARG347 GLY348 TYR349 SER350 LEU351 VAL352 SER353 GLY354 GLY355 THR356 ASP357 ASN358 HIS359 LEU360 VAL361 LEU362 VAL363 ASP364 LEU365 ARG366 PRO367 LYS368 GLY369 LEU370 ASP371 GLY372 ALA373 ARG374 ALA375 GLU376 ARG377 VAL378 LEU379 GLU380 LEU381 VAL382 SER383 ILE384 THR385 ALA386 ASN387 LYS388 ASN389 THR390 CYS391 THR399 PRO400 GLY401 GLY402 LEU403 ARG404 LEU405 GLY406 ALA407 PRO408 ALA409 LEU410 THR411 SER412 ARG413 GLN414 PHE415 ARG416 GLU417 ASP418 ASP419 PHE420 ARG421 ARG422 VAL423 VAL424 ASP425 PHE426 ILE427 ASP428 GLU429 GLY430 VAL431 ASN432 ILE433 GLY434 LEU435 GLU436 VAL437 LYS438 SER439 LYS440 THR441 ALA442 LYS443 LEU444 GLN445 ASP446 PHE447 LYS448 SER449 PHE450 LEU451 LEU452 LYS453 ASP454 SER455 GLU456 THR457 SER458 GLN459 ARG460 LEU461 ALA462 ASN463 LEU464 ARG465 GLN466 ARG467 VAL468 GLU469 GLN470 PHE471 ALA472 ARG473 ALA474 PHE475 PRO476 MET477 PRO478 GLY479 PHE480 ASP481 GLU482 HIS483 |
| Unit 3 | GOL501 PEG502 |
| Unit 4 | GOL501 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |