4PVD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF YEAST METHYLGLYOXAL/ISOVALERALDEHYDE RE GRE2 COMPLEXED WITH NADPH
• Keywords: ROSSMANN FOLD, REDUCTASE, NADPH BINDING, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4PVD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	A	342	2690	0
2	Protein	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	B	342	2690	0
3	Protein	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	C	308	2422	0
4	Protein	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	D	305	2391	0
5	Ligand	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	A	1	0	48
6	Ligand	NADPH-DEPENDENT METHYLGLYOXAL REDUCTASE GRE2	B	1	0	48
7	Water			127	0	127
total				1426	10193	223

Proteins

Unit 1	MET 1 SER 2 VAL 3 PHE 4 VAL 5 SER 6 GLY 7 ALA 8 ASN 9 GLY 10 PHE 11 ILE 12 ALA 13 GLN 14 HIS 15 ILE 16 VAL 17 ASP 18 LEU 19 LEU 20 LEU 21 LYS 22 GLU 23 ASP 24 TYR 25 LYS 26 VAL 27 ILE 28 GLY 29 SER 30 ALA 31 ARG 32 SER 33 GLN 34 GLU 35 LYS 36 ALA 37 GLU 38 ASN 39 LEU 40 THR 41 GLU 42 ALA 43 PHE 44 GLY 45 ASN 46 ASN 47 PRO 48 LYS 49 PHE 50 SER 51 MET 52 GLU 53 VAL 54 VAL 55 PRO 56 ASP 57 ILE 58 SER 59 LYS 60 LEU 61 ASP 62 ALA 63 PHE 64 ASP 65 HIS 66 VAL 67 PHE 68 GLN 69 LYS 70 HIS 71 GLY 72 LYS 73 ASP 74 ILE 75 LYS 76 ILE 77 VAL 78 LEU 79 HIS 80 THR 81 ALA 82 SER 83 PRO 84 PHE 85 CYS 86 PHE 87 ASP 88 ILE 89 THR 90 ASP 91 SER 92 GLU 93 ARG 94 ASP 95 LEU 96 LEU 97 ILE 98 PRO 99 ALA 100 VAL 101 ASN 102 GLY 103 VAL 104 LYS 105 GLY 106 ILE 107 LEU 108 HIS 109 SER 110 ILE 111 LYS 112 LYS 113 TYR 114 ALA 115 ALA 116 ASP 117 SER 118 VAL 119 GLU 120 ARG 121 VAL 122 VAL 123 LEU 124 THR 125 SER 126 SER 127 TYR 128 ALA 129 ALA 130 VAL 131 PHE 132 ASP 133 MET 134 ALA 135 LYS 136 GLU 137 ASN 138 ASP 139 LYS 140 SER 141 LEU 142 THR 143 PHE 144 ASN 145 GLU 146 GLU 147 SER 148 TRP 149 ASN 150 PRO 151 ALA 152 THR 153 TRP 154 GLU 155 SER 156 CYS 157 GLN 158 SER 159 ASP 160 PRO 161 VAL 162 ASN 163 ALA 164 TYR 165 CYS 166 GLY 167 SER 168 LYS 169 LYS 170 PHE 171 ALA 172 GLU 173 LYS 174 ALA 175 ALA 176 TRP 177 GLU 178 PHE 179 LEU 180 GLU 181 GLU 182 ASN 183 ARG 184 ASP 185 SER 186 VAL 187 LYS 188 PHE 189 GLU 190 LEU 191 THR 192 ALA 193 VAL 194 ASN 195 PRO 196 VAL 197 TYR 198 VAL 199 PHE 200 GLY 201 PRO 202 GLN 203 MET 204 PHE 205 ASP 206 LYS 207 ASP 208 VAL 209 LYS 210 LYS 211 HIS 212 LEU 213 ASN 214 THR 215 SER 216 CYS 217 GLU 218 LEU 219 VAL 220 ASN 221 SER 222 LEU 223 MET 224 HIS 225 LEU 226 SER 227 PRO 228 GLU 229 ASP 230 LYS 231 ILE 232 PRO 233 GLU 234 LEU 235 PHE 236 GLY 237 GLY 238 TYR 239 ILE 240 ASP 241 VAL 242 ARG 243 ASP 244 VAL 245 ALA 246 LYS 247 ALA 248 HIS 249 LEU 250 VAL 251 ALA 252 PHE 253 GLN 254 LYS 255 ARG 256 GLU 257 THR 258 ILE 259 GLY 260 GLN 261 ARG 262 LEU 263 ILE 264 VAL 265 SER 266 GLU 267 ALA 268 ARG 269 PHE 270 THR 271 MET 272 GLN 273 ASP 274 VAL 275 LEU 276 ASP 277 ILE 278 LEU 279 ASN 280 GLU 281 ASP 282 PHE 283 PRO 284 VAL 285 LEU 286 LYS 287 GLY 288 ASN 289 ILE 290 PRO 291 VAL 292 GLY 293 LYS 294 PRO 295 GLY 296 SER 297 GLY 298 ALA 299 THR 300 HIS 301 ASN 302 THR 303 LEU 304 GLY 305 ALA 306 THR 307 LEU 308 ASP 309 ASN 310 LYS 311 LYS 312 SER 313 LYS 314 LYS 315 LEU 316 LEU 317 GLY 318 PHE 319 LYS 320 PHE 321 ARG 322 ASN 323 LEU 324 LYS 325 GLU 326 THR 327 ILE 328 ASP 329 ASP 330 THR 331 ALA 332 SER 333 GLN 334 ILE 335 LEU 336 LYS 337 PHE 338 GLU 339 GLY 340 ARG 341 ILE 342
Unit 2	MET 1 SER 2 VAL 3 PHE 4 VAL 5 SER 6 GLY 7 ALA 8 ASN 9 GLY 10 PHE 11 ILE 12 ALA 13 GLN 14 HIS 15 ILE 16 VAL 17 ASP 18 LEU 19 LEU 20 LEU 21 LYS 22 GLU 23 ASP 24 TYR 25 LYS 26 VAL 27 ILE 28 GLY 29 SER 30 ALA 31 ARG 32 SER 33 GLN 34 GLU 35 LYS 36 ALA 37 GLU 38 ASN 39 LEU 40 THR 41 GLU 42 ALA 43 PHE 44 GLY 45 ASN 46 ASN 47 PRO 48 LYS 49 PHE 50 SER 51 MET 52 GLU 53 VAL 54 VAL 55 PRO 56 ASP 57 ILE 58 SER 59 LYS 60 LEU 61 ASP 62 ALA 63 PHE 64 ASP 65 HIS 66 VAL 67 PHE 68 GLN 69 LYS 70 HIS 71 GLY 72 LYS 73 ASP 74 ILE 75 LYS 76 ILE 77 VAL 78 LEU 79 HIS 80 THR 81 ALA 82 SER 83 PRO 84 PHE 85 CYS 86 PHE 87 ASP 88 ILE 89 THR 90 ASP 91 SER 92 GLU 93 ARG 94 ASP 95 LEU 96 LEU 97 ILE 98 PRO 99 ALA 100 VAL 101 ASN 102 GLY 103 VAL 104 LYS 105 GLY 106 ILE 107 LEU 108 HIS 109 SER 110 ILE 111 LYS 112 LYS 113 TYR 114 ALA 115 ALA 116 ASP 117 SER 118 VAL 119 GLU 120 ARG 121 VAL 122 VAL 123 LEU 124 THR 125 SER 126 SER 127 TYR 128 ALA 129 ALA 130 VAL 131 PHE 132 ASP 133 MET 134 ALA 135 LYS 136 GLU 137 ASN 138 ASP 139 LYS 140 SER 141 LEU 142 THR 143 PHE 144 ASN 145 GLU 146 GLU 147 SER 148 TRP 149 ASN 150 PRO 151 ALA 152 THR 153 TRP 154 GLU 155 SER 156 CYS 157 GLN 158 SER 159 ASP 160 PRO 161 VAL 162 ASN 163 ALA 164 TYR 165 CYS 166 GLY 167 SER 168 LYS 169 LYS 170 PHE 171 ALA 172 GLU 173 LYS 174 ALA 175 ALA 176 TRP 177 GLU 178 PHE 179 LEU 180 GLU 181 GLU 182 ASN 183 ARG 184 ASP 185 SER 186 VAL 187 LYS 188 PHE 189 GLU 190 LEU 191 THR 192 ALA 193 VAL 194 ASN 195 PRO 196 VAL 197 TYR 198 VAL 199 PHE 200 GLY 201 PRO 202 GLN 203 MET 204 PHE 205 ASP 206 LYS 207 ASP 208 VAL 209 LYS 210 LYS 211 HIS 212 LEU 213 ASN 214 THR 215 SER 216 CYS 217 GLU 218 LEU 219 VAL 220 ASN 221 SER 222 LEU 223 MET 224 HIS 225 LEU 226 SER 227 PRO 228 GLU 229 ASP 230 LYS 231 ILE 232 PRO 233 GLU 234 LEU 235 PHE 236 GLY 237 GLY 238 TYR 239 ILE 240 ASP 241 VAL 242 ARG 243 ASP 244 VAL 245 ALA 246 LYS 247 ALA 248 HIS 249 LEU 250 VAL 251 ALA 252 PHE 253 GLN 254 LYS 255 ARG 256 GLU 257 THR 258 ILE 259 GLY 260 GLN 261 ARG 262 LEU 263 ILE 264 VAL 265 SER 266 GLU 267 ALA 268 ARG 269 PHE 270 THR 271 MET 272 GLN 273 ASP 274 VAL 275 LEU 276 ASP 277 ILE 278 LEU 279 ASN 280 GLU 281 ASP 282 PHE 283 PRO 284 VAL 285 LEU 286 LYS 287 GLY 288 ASN 289 ILE 290 PRO 291 VAL 292 GLY 293 LYS 294 PRO 295 GLY 296 SER 297 GLY 298 ALA 299 THR 300 HIS 301 ASN 302 THR 303 LEU 304 GLY 305 ALA 306 THR 307 LEU 308 ASP 309 ASN 310 LYS 311 LYS 312 SER 313 LYS 314 LYS 315 LEU 316 LEU 317 GLY 318 PHE 319 LYS 320 PHE 321 ARG 322 ASN 323 LEU 324 LYS 325 GLU 326 THR 327 ILE 328 ASP 329 ASP 330 THR 331 ALA 332 SER 333 GLN 334 ILE 335 LEU 336 LYS 337 PHE 338 GLU 339 GLY 340 ARG 341 ILE 342
Unit 3	MET 1 SER 2 VAL 3 PHE 4 VAL 5 SER 6 GLY 7 ALA 8 ASN 9 GLY 10 PHE 11 ILE 12 ALA 13 GLN 14 HIS 15 ILE 16 VAL 17 ASP 18 LEU 19 LEU 20 LEU 21 LYS 22 GLU 23 ASP 24 TYR 25 LYS 26 VAL 27 ILE 28 GLY 29 SER 30 ALA 31 ARG 32 SER 33 GLN 34 GLU 35 LYS 36 ALA 37 GLU 38 ASN 39 LEU 40 THR 41 GLU 42 ALA 43 PHE 44 GLY 45 ASN 46 ASN 47 PRO 48 LYS 49 PHE 50 SER 51 MET 52 GLU 53 VAL 54 VAL 55 PRO 56 ASP 57 ILE 58 SER 59 LYS 60 LEU 61 ASP 62 ALA 63 PHE 64 ASP 65 HIS 66 VAL 67 PHE 68 GLN 69 LYS 70 HIS 71 GLY 72 LYS 73 ASP 74 ILE 75 LYS 76 ILE 77 VAL 78 LEU 79 HIS 80 THR 81 ALA 82 SER 83 PRO 84 LEU 97 ILE 98 PRO 99 ALA 100 VAL 101 ASN 102 GLY 103 VAL 104 LYS 105 GLY 106 ILE 107 LEU 108 HIS 109 SER 110 ILE 111 LYS 112 LYS 113 TYR 114 ALA 115 ALA 116 ASP 117 SER 118 VAL 119 GLU 120 ARG 121 VAL 122 VAL 123 LEU 124 THR 125 SER 126 SER 127 TYR 128 ALA 129 ALA 130 VAL 131 PHE 132 ASP 133 MET 134 ALA 135 LYS 136 GLU 137 ASN 138 ASP 139 LYS 140 SER 141 LEU 142 THR 143 PHE 144 ASN 145 GLU 146 GLU 147 SER 148 TRP 149 ASN 150 PRO 151 ALA 152 THR 153 LYS 169 LYS 170 PHE 171 ALA 172 GLU 173 LYS 174 ALA 175 ALA 176 TRP 177 GLU 178 PHE 179 LEU 180 GLU 181 GLU 182 ASN 183 ARG 184 ASP 185 SER 186 VAL 187 LYS 188 PHE 189 GLU 190 LEU 191 THR 192 ALA 193 VAL 194 ASN 195 PRO 196 VAL 197 TYR 198 VAL 199 PHE 200 GLY 201 PRO 202 GLN 203 MET 204 PHE 205 ASP 206 LYS 207 ASP 208 VAL 209 LYS 210 LYS 211 GLU 218 LEU 219 VAL 220 ASN 221 SER 222 LEU 223 MET 224 HIS 225 LEU 226 SER 227 PRO 228 GLU 229 ASP 230 LYS 231 ILE 232 PRO 233 GLU 234 LEU 235 PHE 236 GLY 237 GLY 238 TYR 239 ILE 240 ASP 241 VAL 242 ARG 243 ASP 244 VAL 245 ALA 246 LYS 247 ALA 248 HIS 249 LEU 250 VAL 251 ALA 252 PHE 253 GLN 254 LYS 255 ARG 256 GLU 257 THR 258 ILE 259 GLY 260 GLN 261 ARG 262 LEU 263 ILE 264 VAL 265 SER 266 GLU 267 ALA 268 ARG 269 PHE 270 THR 271 MET 272 GLN 273 ASP 274 VAL 275 LEU 276 ASP 277 ILE 278 LEU 279 ASN 280 GLU 281 ASP 282 PHE 283 PRO 284 VAL 285 LEU 286 LYS 287 GLY 288 ASN 289 ILE 290 PRO 291 VAL 292 GLY 293 LYS 294 PRO 295 GLY 296 SER 297 GLY 298 ALA 299 THR 300 HIS 301 ASN 302 THR 303 LEU 304 GLY 305 ALA 306 THR 307 LEU 308 ASP 309 ASN 310 LYS 311 LYS 312 SER 313 LYS 314 LYS 315 LEU 316 LEU 317 GLY 318 PHE 319 LYS 320 PHE 321 ARG 322 ASN 323 LEU 324 LYS 325 GLU 326 THR 327 ILE 328 ASP 329 ASP 330 THR 331 ALA 332 SER 333 GLN 334 ILE 335 LEU 336 LYS 337 PHE 338 GLU 339 GLY 340 ARG 341
Unit 4	MET 1 SER 2 VAL 3 PHE 4 VAL 5 SER 6 GLY 7 ALA 8 ASN 9 GLY 10 PHE 11 ILE 12 ALA 13 GLN 14 HIS 15 ILE 16 VAL 17 ASP 18 LEU 19 LEU 20 LEU 21 LYS 22 GLU 23 ASP 24 TYR 25 LYS 26 VAL 27 ILE 28 GLY 29 SER 30 ALA 31 ARG 32 SER 33 GLN 34 GLU 35 LYS 36 ALA 37 GLU 38 ASN 39 LEU 40 THR 41 GLU 42 ALA 43 PHE 44 GLY 45 ASN 46 ASN 47 PRO 48 LYS 49 PHE 50 SER 51 MET 52 GLU 53 VAL 54 VAL 55 PRO 56 ASP 57 ILE 58 SER 59 LYS 60 LEU 61 ASP 62 ALA 63 PHE 64 ASP 65 HIS 66 VAL 67 PHE 68 GLN 69 LYS 70 HIS 71 GLY 72 LYS 73 ASP 74 ILE 75 LYS 76 ILE 77 VAL 78 LEU 79 HIS 80 THR 81 ALA 82 SER 83 PRO 84 LEU 96 LEU 97 ILE 98 PRO 99 ALA 100 VAL 101 ASN 102 GLY 103 VAL 104 LYS 105 GLY 106 ILE 107 LEU 108 HIS 109 SER 110 ILE 111 LYS 112 LYS 113 TYR 114 ALA 115 ALA 116 ASP 117 SER 118 VAL 119 GLU 120 ARG 121 VAL 122 VAL 123 LEU 124 THR 125 SER 126 SER 127 TYR 128 ALA 129 ALA 130 VAL 131 PHE 132 ASP 133 LYS 136 GLU 137 ASN 138 ASP 139 LYS 140 SER 141 LEU 142 THR 143 PHE 144 ASN 145 ASN 150 PRO 151 ALA 152 THR 153 SER 168 LYS 169 LYS 170 PHE 171 ALA 172 GLU 173 LYS 174 ALA 175 ALA 176 TRP 177 GLU 178 PHE 179 LEU 180 GLU 181 GLU 182 ASN 183 ARG 184 ASP 185 SER 186 VAL 187 LYS 188 PHE 189 GLU 190 LEU 191 THR 192 ALA 193 VAL 194 ASN 195 PRO 196 VAL 197 TYR 198 VAL 199 PHE 200 GLY 201 PRO 202 GLN 203 MET 204 PHE 205 ASP 206 LYS 207 ASP 208 VAL 209 LYS 210 LYS 211 CYS 217 GLU 218 LEU 219 VAL 220 ASN 221 SER 222 LEU 223 MET 224 HIS 225 LEU 226 SER 227 PRO 228 GLU 229 ASP 230 LYS 231 ILE 232 PRO 233 GLU 234 LEU 235 PHE 236 GLY 237 GLY 238 TYR 239 ILE 240 ASP 241 VAL 242 ARG 243 ASP 244 VAL 245 ALA 246 LYS 247 ALA 248 HIS 249 LEU 250 VAL 251 ALA 252 PHE 253 GLN 254 LYS 255 ARG 256 GLU 257 THR 258 ILE 259 GLY 260 GLN 261 ARG 262 LEU 263 ILE 264 VAL 265 SER 266 GLU 267 ALA 268 ARG 269 PHE 270 THR 271 MET 272 GLN 273 ASP 274 VAL 275 LEU 276 ASP 277 ILE 278 LEU 279 ASN 280 GLU 281 ASP 282 PHE 283 PRO 284 VAL 285 LEU 286 LYS 287 GLY 288 ASN 289 ILE 290 PRO 291 VAL 292 GLY 293 LYS 294 PRO 295 GLY 296 SER 297 GLY 298 ALA 299 THR 300 HIS 301 ASN 302 THR 303 LEU 304 GLY 305 ALA 306 THR 307 LEU 308 ASP 309 ASN 310 LYS 311 LYS 312 SER 313 LYS 314 LYS 315 LEU 316 LEU 317 GLY 318 PHE 319 LYS 320 PHE 321 ARG 322 ASN 323 LEU 324 LYS 325 GLU 326 THR 327 ILE 328 ASP 329 ASP 330 THR 331 ALA 332 SER 333 GLN 334 ILE 335 LEU 336 LYS 337 PHE 338 GLU 339 GLY 340 ARG 341

Ligands

Unit 5	NDP 401
Unit 6	NDP 401