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Title | A SECOND LOOK AT THE HDV RIBOZYME STRUCTURE AND DYNAMICS. | |
Keywords | BASE SEQUENCE, BINDING SITES, CATALYSIS, CLONING, MOLECULAR, GRAPHICS, ESCHERICHIA COLI, HEPATITIS DELTA VIRUS, MODELS, SEQUENCE DATA, NUCLEIC ACID CONFORMATION, RNA, CATALYTIC, V RNA-BINDING PROTEINS, RIBONUCLEOPROTEIN, U1 SMALL NUCLEAR, BINDING PROTEIN/RNA, RNA BINDING PROTEIN-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4PR6 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | B | 72 | 2314 | 0 | |
2 | Protein | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | A | 95 | 1501 | 67 |
3 | Ligand | HDV RIBOZYME SELF-CLEAVED | B | 13 | 0 | 13 |
4 | Ligand | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | A | 3 | 0 | 3 |
5 | Water | 83 | 0 | 83 | ||
total | 266 | 3815 | 166 |
Unit 2 | PRO4 GLU5 THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MSE51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MSE72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MSE82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MSE97 ALA98 |
Unit 1 | G101 G102 C103 C104 G105 G106 C107 A108 U109 G110 G111 U112 C113 C114 C115 A116 G117 C118 C119 U120 C121 C122 U123 C124 G125 C126 U127 G128 G129 C130 G131 C132 C133 G134 G135 C136 U137 G138 G139 G140 C141 A142 A143 C144 A145 C146 C147 A148 U149 U150 G151 C152 A153 C154 U155 C156 C157 G158 G159 U160 G161 G162 C163 G164 A165 A166 U167 G168 G169 G170 A171 C172 |
Unit 3 | MG401 MG402 MG403 MG404 MG405 MG406 MG407 MG408 MG409 MG410 MG411 MG412 MG413 |
Unit 4 | MG101 MG102 MG103 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |