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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AN XRN1-RESISTANT RNA FROM THE 3' UNTRA REGION OF A FLAVIVIRUS (MURRAY VALLEY ENCEPHALITIS VIRUS)
Keywords FLAVIVIRUS, 3' UNTRANSLATED REGION, SFRNA, PSEUDOKNOT, TYPE THREE-WAY JUNCTION, XRN1 RESISTANT RNA, XRRNA), RESISTS DEG EXONUCLEASE XRN1, SMALL FLAVIVIRAL RNA, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4PQV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 68 1466 0
2  Ligand   XRN1-RESISTANT FLAVIVIRAL RNA  A 9 0 9
3 Water     7 0 7
total       84 1466 16

Nucleic acids
Unit 1 G1 G2 G3 U4 C5 A6 G7 A8 U9 C10 G11 G12 C13 G14 A15 A16 A17 G18 U19 C20 G21 C22 C23 A24 C25 U26 U27 C28 G29 C30 C31 G32 A33 G34 G35 A36 G37 U38 G39 C40 A41 A42 U43 C44 U45 G46 U47 G48 A49 G50 G51 C52 C53 C54 C55 A56 G57 G58 A59 G60 G61 A62 C63 U64 G65 G66 G67 U68

Ligands
Unit 2 MG101 MG102 MG103 MG104 MG105 MG106 MG107 MG108 MG109

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany