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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF MOUSE DIS3L2 IN COMPLEX WITH OLIGOU RNA SUBSTRA
Keywords MIRNA REGULATION, EXONUCLEASE, RNA COMPLEX, RNA INTERFERENCE HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4PMW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIS3-LIKE EXONUCLEASE 2  A 691 11046 0
2  Protein   DIS3-LIKE EXONUCLEASE 2  B 691 11046 0
3  RNA    C 14 421 0
4  RNA    D 14 421 0
5  Ligand   DIS3-LIKE EXONUCLEASE 2  A 1 0 1
6  Ligand   DIS3-LIKE EXONUCLEASE 2  B 1 0 1
7 Water     6 0 6
total       1418 22934 8
Proteins
Unit 1 ILE49 PHE50 GLU51 THR52 TYR53 MET54 SER55 LYS56 GLU57 ASP58 VAL59 SER60 GLU61 GLY62 LEU63 LYS64 ARG65 GLY66 THR67 LEU68 ILE69 GLN70 GLY71 VAL72 LEU73 ARG74 ILE75 ASN76 PRO77 LYS78 LYS79 PHE80 HIS81 GLU82 ALA83 PHE84 ILE85 PRO86 SER87 PRO88 ASP89 GLY90 ASP91 ARG92 ASP93 ILE94 PHE95 ILE96 ASP97 GLY98 VAL99 VAL100 ALA101 ARG102 ASN103 ARG104 ALA105 LEU106 ASN107 GLY108 ASP109 LEU110 VAL111 VAL112 VAL113 LYS114 LEU115 LEU116 PRO117 GLU118 LYS229 SER230 ALA231 LYS232 VAL233 VAL234 TYR235 ILE236 LEU237 GLU238 LYS239 LYS240 HIS241 SER242 ARG243 ALA244 ALA245 THR246 GLY247 ILE248 LEU249 LYS250 LEU251 LEU259 PHE260 LYS261 LYS262 TYR263 ALA264 LEU265 PHE266 SER267 PRO268 SER269 ASP270 HIS271 ARG272 VAL273 PRO274 ARG275 ILE276 TYR277 VAL278 PRO279 LEU280 LYS281 ASP282 CYS283 PRO284 GLN285 ASP286 PHE287 MET288 THR289 ARG290 PRO291 LYS292 ASP293 PHE294 ALA295 ASN296 THR297 LEU298 PHE299 ILE300 CYS301 ARG302 ILE303 ILE304 ASP305 TRP306 LYS307 GLU308 ASP309 CYS310 ASN311 PHE312 ALA313 LEU314 GLY315 GLN316 LEU317 ALA318 LYS319 SER320 LEU321 GLY322 GLN323 ALA324 GLY325 GLU326 ILE327 GLU328 PRO329 GLU330 THR331 GLU332 GLY333 ILE334 LEU335 THR336 GLU337 TYR338 GLY339 VAL340 ASP341 PHE342 SER343 ASP344 PHE345 SER346 SER347 GLU348 VAL349 LEU350 GLU351 CYS352 LEU353 PRO354 GLN355 SER356 LEU357 PRO358 TRP359 THR360 ILE361 PRO362 PRO363 ASP364 GLU365 VAL366 GLY367 LYS368 ARG369 ARG370 ASP371 LEU372 ARG373 LYS374 ASP375 CYS376 ILE377 PHE378 THR379 ILE380 ASP381 PRO382 SER383 THR384 ALA385 ARG386 ASP387 LEU388 ASN389 ASP390 ALA391 LEU392 ALA393 CYS394 ARG395 ARG396 LEU397 THR398 ASP399 GLY400 THR401 PHE402 GLU403 VAL404 GLY405 VAL406 HIS407 ILE408 ALA409 ASP410 VAL411 SER412 TYR413 PHE414 VAL415 PRO416 GLU417 GLY418 SER419 SER420 LEU421 ASP422 LYS423 VAL424 ALA425 ALA426 GLU427 ARG428 ALA429 THR430 SER431 VAL432 TYR433 LEU434 VAL435 GLN436 LYS437 VAL438 VAL439 PRO440 MET441 LEU442 PRO443 ARG444 LEU445 LEU446 CYS447 GLU448 GLU449 LEU450 CYS451 SER452 LEU453 ASN454 PRO455 MET456 THR457 ASP458 LYS459 LEU460 THR461 PHE462 SER463 VAL464 ILE465 TRP466 LYS467 LEU468 THR469 PRO470 GLU471 GLY472 LYS473 ILE474 LEU475 GLU476 GLU477 TRP478 PHE479 GLY480 ARG481 THR482 ILE483 ILE484 ARG485 SER486 CYS487 THR488 LYS489 LEU490 SER491 TYR492 ASP493 HIS494 ALA495 GLN496 SER497 MET498 ILE499 GLU500 ASN501 PRO502 THR503 GLU504 LYS505 ILE506 PRO507 GLU508 GLU509 GLU510 LEU511 PRO512 PRO513 ILE514 SER515 PRO516 GLU517 HIS518 SER519 VAL520 GLU521 GLU522 VAL523 HIS524 GLN525 ALA526 VAL527 LEU528 ASN529 LEU530 HIS531 SER532 ILE533 ALA534 LYS535 GLN536 LEU537 ARG538 ARG539 GLN540 ARG541 PHE542 VAL543 ASP544 GLY545 ALA546 LEU547 ARG548 LEU549 ASP550 GLN551 LEU552 LYS553 LEU554 ALA555 PHE556 THR557 LEU558 ASP559 HIS560 GLU561 THR562 GLY563 LEU564 PRO565 GLN566 GLY567 CYS568 HIS569 ILE570 TYR571 GLU572 TYR573 ARG574 ASP575 SER576 ASN577 LYS578 LEU579 VAL580 GLU581 GLU582 PHE583 MET584 LEU585 LEU586 ALA587 ASN588 MET589 ALA590 VAL591 ALA592 HIS593 LYS594 ILE595 PHE596 ARG597 THR598 PHE599 PRO600 GLU601 GLN602 ALA603 LEU604 LEU605 ARG606 ARG607 HIS608 PRO609 PRO610 PRO611 GLN612 THR613 LYS614 MET615 LEU616 SER617 ASP618 LEU619 VAL620 GLU621 PHE622 CYS623 ASP624 GLN625 MET626 GLY627 LEU628 PRO629 MET630 ASP631 VAL632 SER633 SER634 ALA635 GLY636 ALA637 LEU638 ASN639 LYS640 SER641 LEU642 THR643 LYS644 THR645 PHE646 GLY647 ASP648 ASP649 LYS650 TYR651 SER652 LEU653 ALA654 ARG655 LYS656 GLU657 VAL658 LEU659 THR660 ASN661 MET662 TYR663 SER664 ARG665 PRO666 MET667 GLN668 MET669 ALA670 LEU671 TYR672 PHE673 CYS674 SER675 GLY676 MET677 LEU678 GLN679 ASP680 GLN681 GLU682 GLN683 PHE684 ARG685 HIS686 TYR687 ALA688 LEU689 ASN690 VAL691 PRO692 LEU693 TYR694 THR695 HIS696 PHE697 THR698 SER699 PRO700 ILE701 ARG702 ARG703 PHE704 ALA705 ASP706 VAL707 ILE708 VAL709 HIS710 ARG711 LEU712 LEU713 ALA714 ALA715 ALA716 LEU717 GLY718 TYR719 SER720 GLU721 GLN722 PRO723 ASP724 VAL725 GLU726 PRO727 ASP728 THR729 LEU730 GLN731 LYS732 GLN733 ALA734 ASP735 HIS736 CYS737 ASN738 ASP739 ARG740 ARG741 MET742 ALA743 SER744 LYS745 ARG746 VAL747 GLN748 GLU749 LEU750 SER751 ILE752 GLY753 LEU754 PHE755 PHE756 ALA757 VAL758 LEU759 VAL760 LYS761 GLU762 SER763 GLY764 PRO765 LEU766 GLU767 SER768 GLU769 ALA770 MET771 VAL772 MET773 GLY774 VAL775 LEU776 ASN777 GLN778 ALA779 PHE780 ASP781 VAL782 LEU783 VAL784 LEU785 ARG786 PHE787 GLY788 VAL789 GLN790 LYS791 ARG792 ILE793 TYR794 CYS795 ASN796 ALA797 LEU798 ALA799 LEU800 ARG801 SER802 TYR803 SER804 PHE805 GLN806 LYS807 VAL808 GLY809 LYS810 LYS811 PRO812 GLU813 LEU814 THR815 LEU816 VAL817 TRP818 GLU819 PRO820 ASP821 ASP822 LEU823 GLU824 GLU825 GLU826 PRO827 THR828 GLN829 GLN830 VAL831 ILE832 THR833 ILE834 PHE835 SER836 LEU837 VAL838 ASP839 VAL840 VAL841 LEU842 GLN843 ALA844 GLU845 ALA846 THR847 ALA848 LEU849 LYS850 TYR851 SER852 ALA853 ILE854 LEU855 LYS856
Unit 2 ILE49 PHE50 GLU51 THR52 TYR53 MET54 SER55 LYS56 GLU57 ASP58 VAL59 SER60 GLU61 GLY62 LEU63 LYS64 ARG65 GLY66 THR67 LEU68 ILE69 GLN70 GLY71 VAL72 LEU73 ARG74 ILE75 ASN76 PRO77 LYS78 LYS79 PHE80 HIS81 GLU82 ALA83 PHE84 ILE85 PRO86 SER87 PRO88 ASP89 GLY90 ASP91 ARG92 ASP93 ILE94 PHE95 ILE96 ASP97 GLY98 VAL99 VAL100 ALA101 ARG102 ASN103 ARG104 ALA105 LEU106 ASN107 GLY108 ASP109 LEU110 VAL111 VAL112 VAL113 LYS114 LEU115 LEU116 PRO117 GLU118 LYS229 SER230 ALA231 LYS232 VAL233 VAL234 TYR235 ILE236 LEU237 GLU238 LYS239 LYS240 HIS241 SER242 ARG243 ALA244 ALA245 THR246 GLY247 ILE248 LEU249 LYS250 LEU251 LEU259 PHE260 LYS261 LYS262 TYR263 ALA264 LEU265 PHE266 SER267 PRO268 SER269 ASP270 HIS271 ARG272 VAL273 PRO274 ARG275 ILE276 TYR277 VAL278 PRO279 LEU280 LYS281 ASP282 CYS283 PRO284 GLN285 ASP286 PHE287 MET288 THR289 ARG290 PRO291 LYS292 ASP293 PHE294 ALA295 ASN296 THR297 LEU298 PHE299 ILE300 CYS301 ARG302 ILE303 ILE304 ASP305 TRP306 LYS307 GLU308 ASP309 CYS310 ASN311 PHE312 ALA313 LEU314 GLY315 GLN316 LEU317 ALA318 LYS319 SER320 LEU321 GLY322 GLN323 ALA324 GLY325 GLU326 ILE327 GLU328 PRO329 GLU330 THR331 GLU332 GLY333 ILE334 LEU335 THR336 GLU337 TYR338 GLY339 VAL340 ASP341 PHE342 SER343 ASP344 PHE345 SER346 SER347 GLU348 VAL349 LEU350 GLU351 CYS352 LEU353 PRO354 GLN355 SER356 LEU357 PRO358 TRP359 THR360 ILE361 PRO362 PRO363 ASP364 GLU365 VAL366 GLY367 LYS368 ARG369 ARG370 ASP371 LEU372 ARG373 LYS374 ASP375 CYS376 ILE377 PHE378 THR379 ILE380 ASP381 PRO382 SER383 THR384 ALA385 ARG386 ASP387 LEU388 ASN389 ASP390 ALA391 LEU392 ALA393 CYS394 ARG395 ARG396 LEU397 THR398 ASP399 GLY400 THR401 PHE402 GLU403 VAL404 GLY405 VAL406 HIS407 ILE408 ALA409 ASP410 VAL411 SER412 TYR413 PHE414 VAL415 PRO416 GLU417 GLY418 SER419 SER420 LEU421 ASP422 LYS423 VAL424 ALA425 ALA426 GLU427 ARG428 ALA429 THR430 SER431 VAL432 TYR433 LEU434 VAL435 GLN436 LYS437 VAL438 VAL439 PRO440 MET441 LEU442 PRO443 ARG444 LEU445 LEU446 CYS447 GLU448 GLU449 LEU450 CYS451 SER452 LEU453 ASN454 PRO455 MET456 THR457 ASP458 LYS459 LEU460 THR461 PHE462 SER463 VAL464 ILE465 TRP466 LYS467 LEU468 THR469 PRO470 GLU471 GLY472 LYS473 ILE474 LEU475 GLU476 GLU477 TRP478 PHE479 GLY480 ARG481 THR482 ILE483 ILE484 ARG485 SER486 CYS487 THR488 LYS489 LEU490 SER491 TYR492 ASP493 HIS494 ALA495 GLN496 SER497 MET498 ILE499 GLU500 ASN501 PRO502 THR503 GLU504 LYS505 ILE506 PRO507 GLU508 GLU509 GLU510 LEU511 PRO512 PRO513 ILE514 SER515 PRO516 GLU517 HIS518 SER519 VAL520 GLU521 GLU522 VAL523 HIS524 GLN525 ALA526 VAL527 LEU528 ASN529 LEU530 HIS531 SER532 ILE533 ALA534 LYS535 GLN536 LEU537 ARG538 ARG539 GLN540 ARG541 PHE542 VAL543 ASP544 GLY545 ALA546 LEU547 ARG548 LEU549 ASP550 GLN551 LEU552 LYS553 LEU554 ALA555 PHE556 THR557 LEU558 ASP559 HIS560 GLU561 THR562 GLY563 LEU564 PRO565 GLN566 GLY567 CYS568 HIS569 ILE570 TYR571 GLU572 TYR573 ARG574 ASP575 SER576 ASN577 LYS578 LEU579 VAL580 GLU581 GLU582 PHE583 MET584 LEU585 LEU586 ALA587 ASN588 MET589 ALA590 VAL591 ALA592 HIS593 LYS594 ILE595 PHE596 ARG597 THR598 PHE599 PRO600 GLU601 GLN602 ALA603 LEU604 LEU605 ARG606 ARG607 HIS608 PRO609 PRO610 PRO611 GLN612 THR613 LYS614 MET615 LEU616 SER617 ASP618 LEU619 VAL620 GLU621 PHE622 CYS623 ASP624 GLN625 MET626 GLY627 LEU628 PRO629 MET630 ASP631 VAL632 SER633 SER634 ALA635 GLY636 ALA637 LEU638 ASN639 LYS640 SER641 LEU642 THR643 LYS644 THR645 PHE646 GLY647 ASP648 ASP649 LYS650 TYR651 SER652 LEU653 ALA654 ARG655 LYS656 GLU657 VAL658 LEU659 THR660 ASN661 MET662 TYR663 SER664 ARG665 PRO666 MET667 GLN668 MET669 ALA670 LEU671 TYR672 PHE673 CYS674 SER675 GLY676 MET677 LEU678 GLN679 ASP680 GLN681 GLU682 GLN683 PHE684 ARG685 HIS686 TYR687 ALA688 LEU689 ASN690 VAL691 PRO692 LEU693 TYR694 THR695 HIS696 PHE697 THR698 SER699 PRO700 ILE701 ARG702 ARG703 PHE704 ALA705 ASP706 VAL707 ILE708 VAL709 HIS710 ARG711 LEU712 LEU713 ALA714 ALA715 ALA716 LEU717 GLY718 TYR719 SER720 GLU721 GLN722 PRO723 ASP724 VAL725 GLU726 PRO727 ASP728 THR729 LEU730 GLN731 LYS732 GLN733 ALA734 ASP735 HIS736 CYS737 ASN738 ASP739 ARG740 ARG741 MET742 ALA743 SER744 LYS745 ARG746 VAL747 GLN748 GLU749 LEU750 SER751 ILE752 GLY753 LEU754 PHE755 PHE756 ALA757 VAL758 LEU759 VAL760 LYS761 GLU762 SER763 GLY764 PRO765 LEU766 GLU767 SER768 GLU769 ALA770 MET771 VAL772 MET773 GLY774 VAL775 LEU776 ASN777 GLN778 ALA779 PHE780 ASP781 VAL782 LEU783 VAL784 LEU785 ARG786 PHE787 GLY788 VAL789 GLN790 LYS791 ARG792 ILE793 TYR794 CYS795 ASN796 ALA797 LEU798 ALA799 LEU800 ARG801 SER802 TYR803 SER804 PHE805 GLN806 LYS807 VAL808 GLY809 LYS810 LYS811 PRO812 GLU813 LEU814 THR815 LEU816 VAL817 TRP818 GLU819 PRO820 ASP821 ASP822 LEU823 GLU824 GLU825 GLU826 PRO827 THR828 GLN829 GLN830 VAL831 ILE832 THR833 ILE834 PHE835 SER836 LEU837 VAL838 ASP839 VAL840 VAL841 LEU842 GLN843 ALA844 GLU845 ALA846 THR847 ALA848 LEU849 LYS850 TYR851 SER852 ALA853 ILE854 LEU855 LYS856
Nucleic acids
Unit 3 U1 U2 U3 U4 U5 U6 U7 U8 U9 U10 U11 U12 U13 U14
Unit 4 U1 U2 U3 U4 U5 U6 U7 U8 U9 U10 U11 U12 U13 U14
Ligands
Unit 5 MG901
Unit 6 MG901
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany