4PLN - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF CHICKEN NETRIN-1 (LN-LE3) COMPLEXED WIT NEOGENIN (FN4-5)
• Keywords: ELONGATED, CYSTEINE RICH, GLYCOPROTEIN, COMPLEX, PROTEIN BIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4PLN	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NETRIN-1	A	417	3265	0
2	Protein	NETRIN-1	B	417	3271	0
3	Protein	NEOGENIN	C	205	1604	0
4	Protein	NEOGENIN	D	204	1600	0
5	Ligand	NETRIN-1	A	4	0	43
6	Ligand	NETRIN-1	B	4	0	43
total				1251	9740	86

Proteins

Unit 1	PRO 40 ASP 41 PRO 42 CYS 43 TYR 44 ASP 45 GLU 46 HIS 47 GLY 48 LEU 49 PRO 50 ARG 51 ARG 52 CYS 53 ILE 54 PRO 55 ASP 56 PHE 57 VAL 58 ASN 59 SER 60 ALA 61 PHE 62 GLY 63 LYS 64 GLU 65 VAL 66 LYS 67 VAL 68 SER 69 SER 70 THR 71 CYS 72 GLY 73 LYS 74 PRO 75 PRO 76 SER 77 ARG 78 TYR 79 CYS 80 VAL 81 VAL 82 THR 83 GLU 84 LYS 85 GLY 86 GLU 87 GLU 88 GLN 89 VAL 90 ARG 91 SER 92 CYS 93 HIS 94 LEU 95 CYS 96 ASN 97 ALA 98 SER 99 ASP 100 PRO 101 LYS 102 ARG 103 ALA 104 HIS 105 PRO 106 PRO 107 SER 108 PHE 109 LEU 110 THR 111 ASP 112 LEU 113 ASN 114 ASN 115 PRO 116 HIS 117 ASN 118 LEU 119 THR 120 CYS 121 TRP 122 GLN 123 SER 124 ASP 125 SER 126 TYR 127 VAL 128 GLN 129 TYR 130 PRO 131 HIS 132 ASN 133 VAL 134 THR 135 LEU 136 THR 137 LEU 138 SER 139 LEU 140 GLY 141 LYS 142 LYS 143 PHE 144 GLU 145 VAL 146 THR 147 TYR 148 VAL 149 SER 150 LEU 151 GLN 152 PHE 153 CYS 154 SER 155 PRO 156 ARG 157 PRO 158 GLU 159 SER 160 MET 161 ALA 162 ILE 163 TYR 164 LYS 165 SER 166 MET 167 ASP 168 TYR 169 GLY 170 LYS 171 THR 172 TRP 173 VAL 174 PRO 175 PHE 176 GLN 177 PHE 178 TYR 179 SER 180 THR 181 GLN 182 CYS 183 ARG 184 LYS 185 MET 186 TYR 187 ASN 188 LYS 189 PRO 190 SER 191 ARG 192 ALA 193 ALA 194 ILE 195 THR 196 LYS 197 GLN 198 ASN 199 GLU 200 GLN 201 GLU 202 ALA 203 ILE 204 CYS 205 THR 206 ASP 207 SER 208 HIS 209 THR 210 ASP 211 VAL 212 ARG 213 PRO 214 LEU 215 SER 216 GLY 217 GLY 218 LEU 219 ILE 220 ALA 221 PHE 222 SER 223 THR 224 LEU 225 ASP 226 GLY 227 ARG 228 PRO 229 THR 230 ALA 231 HIS 232 ASP 233 PHE 234 ASP 235 ASN 236 SER 237 PRO 238 VAL 239 LEU 240 GLN 241 ASP 242 TRP 243 VAL 244 THR 245 ALA 246 THR 247 ASP 248 ILE 249 LYS 250 VAL 251 THR 252 PHE 253 SER 254 ARG 255 LEU 256 HIS 257 THR 258 PHE 259 GLY 260 ASP 261 GLU 262 ASN 263 GLU 264 ASP 265 ASP 266 SER 267 GLU 268 LEU 269 ALA 270 ARG 271 ASP 272 SER 273 TYR 274 PHE 275 TYR 276 ALA 277 VAL 278 SER 279 ASP 280 LEU 281 GLN 282 VAL 283 GLY 284 GLY 285 ARG 286 CYS 287 LYS 288 CYS 289 ASN 290 GLY 291 HIS 292 ALA 293 SER 294 ARG 295 CYS 296 VAL 297 ARG 298 ASP 299 ARG 300 ASP 301 ASP 302 ASN 303 LEU 304 VAL 305 CYS 306 ASP 307 CYS 308 LYS 309 HIS 310 ASN 311 THR 312 ALA 313 GLY 314 PRO 315 GLU 316 CYS 317 ASP 318 ARG 319 CYS 320 LYS 321 PRO 322 PHE 323 HIS 324 TYR 325 ASP 326 ARG 327 PRO 328 TRP 329 GLN 330 ARG 331 ALA 332 THR 333 ALA 334 ARG 335 GLU 336 ALA 337 ASN 338 GLU 339 CYS 340 VAL 341 ALA 342 CYS 343 ASN 344 CYS 345 ASN 346 LEU 347 HIS 348 ALA 349 ARG 350 ARG 351 CYS 352 ARG 353 PHE 354 ASN 355 MET 356 GLU 357 LEU 358 TYR 359 LYS 360 LEU 361 SER 362 GLY 363 ARG 364 LYS 365 SER 366 GLY 367 GLY 368 VAL 369 CYS 370 LEU 371 ASN 372 CYS 373 ARG 374 HIS 375 ASN 376 THR 377 ALA 378 GLY 379 ARG 380 HIS 381 CYS 382 HIS 383 TYR 384 CYS 385 LYS 386 GLU 387 GLY 388 PHE 389 TYR 390 ARG 391 ASP 392 LEU 393 SER 394 LYS 395 PRO 396 ILE 397 SER 398 HIS 399 ARG 400 LYS 401 ALA 402 CYS 403 LYS 404 GLU 405 CYS 406 ASP 407 CYS 408 HIS 409 PRO 410 VAL 411 GLY 412 ALA 413 ALA 414 GLY 415 GLN 416 THR 417 CYS 418 ASN 419 GLN 420 THR 421 THR 422 GLY 423 GLN 424 CYS 425 PRO 426 CYS 427 LYS 428 ASP 429 GLY 430 VAL 431 THR 432 GLY 433 ILE 434 THR 435 CYS 436 ASN 437 ARG 438 CYS 439 ALA 440 LYS 441 GLY 442 TYR 443 GLN 444 GLN 445 SER 446 ARG 447 SER 448 PRO 449 ILE 450 ALA 451 PRO 452 CYS 453 ILE 454 LYS 455 ILE 456
Unit 2	PRO 40 ASP 41 PRO 42 CYS 43 TYR 44 ASP 45 GLU 46 HIS 47 GLY 48 LEU 49 PRO 50 ARG 51 ARG 52 CYS 53 ILE 54 PRO 55 ASP 56 PHE 57 VAL 58 ASN 59 SER 60 ALA 61 PHE 62 GLY 63 LYS 64 GLU 65 VAL 66 LYS 67 VAL 68 SER 69 SER 70 THR 71 CYS 72 GLY 73 LYS 74 PRO 75 PRO 76 SER 77 ARG 78 TYR 79 CYS 80 VAL 81 VAL 82 THR 83 GLU 84 LYS 85 GLY 86 GLU 87 GLU 88 GLN 89 VAL 90 ARG 91 SER 92 CYS 93 HIS 94 LEU 95 CYS 96 ASN 97 ALA 98 SER 99 ASP 100 PRO 101 LYS 102 ARG 103 ALA 104 HIS 105 PRO 106 PRO 107 SER 108 PHE 109 LEU 110 THR 111 ASP 112 LEU 113 ASN 114 ASN 115 PRO 116 HIS 117 ASN 118 LEU 119 THR 120 CYS 121 TRP 122 GLN 123 SER 124 ASP 125 SER 126 TYR 127 VAL 128 GLN 129 TYR 130 PRO 131 HIS 132 ASN 133 VAL 134 THR 135 LEU 136 THR 137 LEU 138 SER 139 LEU 140 GLY 141 LYS 142 LYS 143 PHE 144 GLU 145 VAL 146 THR 147 TYR 148 VAL 149 SER 150 LEU 151 GLN 152 PHE 153 CYS 154 SER 155 PRO 156 ARG 157 PRO 158 GLU 159 SER 160 MET 161 ALA 162 ILE 163 TYR 164 LYS 165 SER 166 MET 167 ASP 168 TYR 169 GLY 170 LYS 171 THR 172 TRP 173 VAL 174 PRO 175 PHE 176 GLN 177 PHE 178 TYR 179 SER 180 THR 181 GLN 182 CYS 183 ARG 184 LYS 185 MET 186 TYR 187 ASN 188 LYS 189 PRO 190 SER 191 ARG 192 ALA 193 ALA 194 ILE 195 THR 196 LYS 197 GLN 198 ASN 199 GLU 200 GLN 201 GLU 202 ALA 203 ILE 204 CYS 205 THR 206 ASP 207 SER 208 HIS 209 THR 210 ASP 211 VAL 212 ARG 213 PRO 214 LEU 215 SER 216 GLY 217 GLY 218 LEU 219 ILE 220 ALA 221 PHE 222 SER 223 THR 224 LEU 225 ASP 226 GLY 227 ARG 228 PRO 229 THR 230 ALA 231 HIS 232 ASP 233 PHE 234 ASP 235 ASN 236 SER 237 PRO 238 VAL 239 LEU 240 GLN 241 ASP 242 TRP 243 VAL 244 THR 245 ALA 246 THR 247 ASP 248 ILE 249 LYS 250 VAL 251 THR 252 PHE 253 SER 254 ARG 255 LEU 256 HIS 257 THR 258 PHE 259 GLY 260 ASP 261 GLU 262 ASN 263 GLU 264 ASP 265 ASP 266 SER 267 GLU 268 LEU 269 ALA 270 ARG 271 ASP 272 SER 273 TYR 274 PHE 275 TYR 276 ALA 277 VAL 278 SER 279 ASP 280 LEU 281 GLN 282 VAL 283 GLY 284 GLY 285 ARG 286 CYS 287 LYS 288 CYS 289 ASN 290 GLY 291 HIS 292 ALA 293 SER 294 ARG 295 CYS 296 VAL 297 ARG 298 ASP 299 ARG 300 ASP 301 ASP 302 ASN 303 LEU 304 VAL 305 CYS 306 ASP 307 CYS 308 LYS 309 HIS 310 ASN 311 THR 312 ALA 313 GLY 314 PRO 315 GLU 316 CYS 317 ASP 318 ARG 319 CYS 320 LYS 321 PRO 322 PHE 323 HIS 324 TYR 325 ASP 326 ARG 327 PRO 328 TRP 329 GLN 330 ARG 331 ALA 332 THR 333 ALA 334 ARG 335 GLU 336 ALA 337 ASN 338 GLU 339 CYS 340 VAL 341 ALA 342 CYS 343 ASN 344 CYS 345 ASN 346 LEU 347 HIS 348 ALA 349 ARG 350 ARG 351 CYS 352 ARG 353 PHE 354 ASN 355 MET 356 GLU 357 LEU 358 TYR 359 LYS 360 LEU 361 SER 362 GLY 363 ARG 364 LYS 365 SER 366 GLY 367 GLY 368 VAL 369 CYS 370 LEU 371 ASN 372 CYS 373 ARG 374 HIS 375 ASN 376 THR 377 ALA 378 GLY 379 ARG 380 HIS 381 CYS 382 HIS 383 TYR 384 CYS 385 LYS 386 GLU 387 GLY 388 PHE 389 TYR 390 ARG 391 ASP 392 LEU 393 SER 394 LYS 395 PRO 396 ILE 397 SER 398 HIS 399 ARG 400 LYS 401 ALA 402 CYS 403 LYS 404 GLU 405 CYS 406 ASP 407 CYS 408 HIS 409 PRO 410 VAL 411 GLY 412 ALA 413 ALA 414 GLY 415 GLN 416 THR 417 CYS 418 ASN 419 GLN 420 THR 421 THR 422 GLY 423 GLN 424 CYS 425 PRO 426 CYS 427 LYS 428 ASP 429 GLY 430 VAL 431 THR 432 GLY 433 ILE 434 THR 435 CYS 436 ASN 437 ARG 438 CYS 439 ALA 440 LYS 441 GLY 442 TYR 443 GLN 444 GLN 445 SER 446 ARG 447 SER 448 PRO 449 ILE 450 ALA 451 PRO 452 CYS 453 ILE 454 LYS 455 ILE 456
Unit 3	GLY 763 SER 764 ASP 765 GLU 766 THR 767 ARG 768 VAL 769 PRO 770 GLU 771 VAL 772 PRO 773 SER 774 SER 775 LEU 776 HIS 777 VAL 778 ARG 779 PRO 780 LEU 781 VAL 782 THR 783 SER 784 ILE 785 VAL 786 VAL 787 SER 788 TRP 789 THR 790 PRO 791 PRO 792 GLU 793 ASN 794 GLN 795 ASN 796 ILE 797 VAL 798 VAL 799 ARG 800 GLY 801 TYR 802 ALA 803 ILE 804 GLY 805 TYR 806 GLY 807 ILE 808 GLY 809 SER 810 PRO 811 HIS 812 ALA 813 GLN 814 THR 815 ILE 816 LYS 817 VAL 818 ASP 819 TYR 820 LYS 821 GLN 822 ARG 823 TYR 824 TYR 825 THR 826 ILE 827 GLU 828 ASN 829 LEU 830 ASP 831 PRO 832 SER 833 SER 834 HIS 835 TYR 836 VAL 837 ILE 838 THR 839 LEU 840 LYS 841 ALA 842 PHE 843 ASN 844 ASN 845 VAL 846 GLY 847 GLU 848 GLY 849 ILE 850 PRO 851 LEU 852 TYR 853 GLU 854 SER 855 ALA 856 VAL 857 THR 858 ARG 859 PRO 860 HIS 861 THR 862 VAL 863 PRO 864 ASP 865 PRO 866 THR 867 PRO 868 MET 869 MET 870 PRO 871 PRO 872 VAL 873 GLY 874 VAL 875 GLN 876 ALA 877 SER 878 ILE 879 LEU 880 SER 881 HIS 882 ASP 883 THR 884 ILE 885 ARG 886 ILE 887 THR 888 TRP 889 ALA 890 ASP 891 ASN 892 SER 893 LEU 894 PRO 895 LYS 896 HIS 897 GLN 898 LYS 899 ILE 900 THR 901 ASP 902 SER 903 ARG 904 TYR 905 TYR 906 THR 907 VAL 908 ARG 909 TRP 910 LYS 911 THR 912 ASN 913 ILE 914 PRO 915 ALA 916 ASN 917 THR 918 LYS 919 TYR 920 LYS 921 ASN 922 ALA 923 GLN 924 ALA 925 THR 926 THR 927 LEU 928 SER 929 TYR 930 LEU 931 VAL 932 THR 933 GLY 934 LEU 935 LYS 936 PRO 937 ASN 938 THR 939 LEU 940 TYR 941 GLU 942 PHE 943 SER 944 VAL 945 MET 946 VAL 947 THR 948 LYS 949 GLY 950 ARG 951 ARG 952 SER 953 SER 954 THR 955 TRP 956 SER 957 MET 958 THR 959 ALA 960 HIS 961 GLY 962 ALA 963 THR 964 ALA 965 SER 966 GLY 967
Unit 4	GLY 763 SER 764 ASP 765 GLU 766 THR 767 ARG 768 VAL 769 PRO 770 GLU 771 VAL 772 PRO 773 SER 774 SER 775 LEU 776 HIS 777 VAL 778 ARG 779 PRO 780 LEU 781 VAL 782 THR 783 SER 784 ILE 785 VAL 786 VAL 787 SER 788 TRP 789 THR 790 PRO 791 PRO 792 GLU 793 ASN 794 GLN 795 ASN 796 ILE 797 VAL 798 VAL 799 ARG 800 GLY 801 TYR 802 ALA 803 ILE 804 GLY 805 TYR 806 GLY 807 ILE 808 GLY 809 SER 810 PRO 811 HIS 812 ALA 813 GLN 814 THR 815 ILE 816 LYS 817 VAL 818 ASP 819 TYR 820 LYS 821 GLN 822 ARG 823 TYR 824 TYR 825 THR 826 ILE 827 GLU 828 ASN 829 LEU 830 ASP 831 PRO 832 SER 833 SER 834 HIS 835 TYR 836 VAL 837 ILE 838 THR 839 LEU 840 LYS 841 ALA 842 PHE 843 ASN 844 ASN 845 VAL 846 GLY 847 GLU 848 GLY 849 ILE 850 PRO 851 LEU 852 TYR 853 GLU 854 SER 855 ALA 856 VAL 857 THR 858 ARG 859 PRO 860 HIS 861 THR 862 VAL 863 PRO 864 ASP 865 PRO 866 THR 867 PRO 868 MET 869 MET 870 PRO 871 PRO 872 VAL 873 GLY 874 VAL 875 GLN 876 ALA 877 SER 878 ILE 879 LEU 880 SER 881 HIS 882 ASP 883 THR 884 ILE 885 ARG 886 ILE 887 THR 888 TRP 889 ALA 890 ASP 891 ASN 892 SER 893 LEU 894 PRO 895 LYS 896 HIS 897 GLN 898 LYS 899 ILE 900 THR 901 ASP 902 SER 903 ARG 904 TYR 905 TYR 906 THR 907 VAL 908 ARG 909 TRP 910 LYS 911 THR 912 ASN 913 ILE 914 PRO 915 ALA 916 ASN 917 THR 918 LYS 919 TYR 920 LYS 921 ASN 922 ALA 923 GLN 924 ALA 925 THR 926 THR 927 LEU 928 SER 929 TYR 930 LEU 931 VAL 932 THR 933 GLY 934 LEU 935 LYS 936 PRO 937 ASN 938 THR 939 LEU 940 TYR 941 GLU 942 PHE 943 SER 944 VAL 945 MET 946 VAL 947 THR 948 LYS 949 GLY 950 ARG 951 ARG 952 SER 953 SER 954 THR 955 TRP 956 SER 957 MET 958 THR 959 ALA 960 HIS 961 GLY 962 ALA 963 THR 964 ALA 965 SER 966

Ligands

Unit 5	NAG 501 NAG 502 NAG 503 CA 504
Unit 6	NAG 501 NAG 502 NAG 503 CA 504