4PDI - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A COMPLEX BETWEEN AN INHIBITED LLFPG AN BENZYL-FAPY-DG CONTAINING DNA
• Keywords: DNA GLYCOSYLASE, 2TX INHIBITOR, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4PDI	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	A	268	2120	0
2	Other macromolecule	DNA (5'-D(*CP*TP*CP*TP*TP*TP*(SOS)P*TP*TP*TP*CP*T 3')	B	14	255	30
3	Other macromolecule		C	14	291	0
4	Ligand	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	A	1	0	11
5	Water			289	0	289
total				586	2666	330

Proteins

Unit 1

PRO 1 GLU 2 LEU 3 PRO 4 GLU 5 VAL 6 GLU 7 THR 8 VAL 9 ARG 10 ARG 11 GLU 12 LEU 13 GLU 14 LYS 15 ARG 16 ILE 17 VAL 18 GLY 19 GLN 20 LYS 21 ILE 22 ILE 23 SER 24 ILE 25 GLU 26 ALA 27 THR 28 TYR 29 PRO 30 ARG 31 MET 32 VAL 33 LEU 34 THR 35 GLY 36 PHE 37 GLU 38 GLN 39 LEU 40 LYS 41 LYS 42 GLU 43 LEU 44 THR 45 GLY 46 LYS 47 THR 48 ILE 49 GLN 50 GLY 51 ILE 52 SER 53 ARG 54 ARG 55 GLY 56 LYS 57 TYR 58 LEU 59 ILE 60 PHE 61 GLU 62 ILE 63 GLY 64 ASP 65 ASP 66 PHE 67 ARG 68 LEU 69 ILE 70 SER 71 HIS 72 LEU 73 ARG 74 MET 75 GLU 76 GLY 77 LYS 78 TYR 79 ARG 80 LEU 81 ALA 82 THR 83 LEU 84 ASP 85 ALA 86 PRO 87 ARG 88 GLU 89 LYS 90 HIS 91 ASP 92 HIS 93 LEU 94 THR 95 MET 96 LYS 97 PHE 98 ALA 99 ASP 100 GLY 101 GLN 102 LEU 103 ILE 104 TYR 105 ALA 106 ASP 107 VAL 108 ARG 109 LYS 110 PHE 111 GLY 112 THR 113 TRP 114 GLU 115 LEU 116 ILE 117 SER 118 THR 119 ASP 120 GLN 121 VAL 122 LEU 123 PRO 124 TYR 125 PHE 126 LEU 127 LYS 128 LYS 129 LYS 130 ILE 131 GLY 132 PRO 133 GLU 134 PRO 135 THR 136 TYR 137 GLU 138 ASP 139 PHE 140 ASP 141 GLU 142 LYS 143 LEU 144 PHE 145 ARG 146 GLU 147 LYS 148 LEU 149 ARG 150 LYS 151 SER 152 THR 153 LYS 154 LYS 155 ILE 156 LYS 157 PRO 158 TYR 159 LEU 160 LEU 161 GLU 162 GLN 163 THR 164 LEU 165 VAL 166 ALA 167 GLY 168 LEU 169 GLY 170 ASN 171 ILE 172 TYR 173 VAL 174 ASP 175 GLU 176 VAL 177 LEU 178 TRP 179 LEU 180 ALA 181 LYS 182 ILE 183 HIS 184 PRO 185 GLU 186 LYS 187 GLU 188 THR 189 ASN 190 GLN 191 LEU 192 ILE 193 GLU 194 SER 195 SER 196 ILE 197 HIS 198 LEU 199 LEU 200 HIS 201 ASP 202 SER 203 ILE 204 ILE 205 GLU 206 ILE 207 LEU 208 GLN 209 LYS 210 ALA 211 ILE 212 LYS 213 LEU 214 GLY 215 GLY 216 SER 217 SER 218 ILE 219 ARG 220 ALA 224 LEU 225 GLY 226 SER 227 THR 228 GLY 229 LYS 230 MET 231 GLN 232 ASN 233 GLU 234 LEU 235 GLN 236 VAL 237 TYR 238 GLY 239 LYS 240 THR 241 GLY 242 GLU 243 LYS 244 CYS 245 SER 246 ARG 247 CYS 248 GLY 249 ALA 250 GLU 251 ILE 252 GLN 253 LYS 254 ILE 255 LYS 256 VAL 257 ALA 258 GLY 259 ARG 260 GLY 261 THR 262 HIS 263 PHE 264 CYS 265 PRO 266 VAL 267 CYS 268 GLN 269 GLN 270 LYS 271

Other macromolecules

Unit 2	DC 1 DT 2 DC 3 DT 4 DT 5 DT 6 SOS 7 DT 8 DT 9 DT 10 DC 11 DT 12 DC 13 DG 14
Unit 3	DG 15 DC 16 DG 17 DA 18 DG 19 DA 20 DA 21 DA 22 DC 23 DA 24 DA 25 DA 26 DG 27 DA 28

Ligands

Unit 4

2ON 300