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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DCMP DEAMINASE FROM THE CYANOPHAGE S-TI COMPLEX WITH DCMP AND DUMP
Keywords DCMP DEAMINASE, CYTIDINE DEAMINASE, DEOXYCYTIDYLATE DEAMINAS TIM5, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4P9C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DEOXYCYTIDYLATE DEAMINASE  A 136 1047 0
2  Protein   DEOXYCYTIDYLATE DEAMINASE  B 136 1047 0
3  Protein   DEOXYCYTIDYLATE DEAMINASE  C 136 1047 0
4  Protein   DEOXYCYTIDYLATE DEAMINASE  D 136 1047 0
5  Protein   DEOXYCYTIDYLATE DEAMINASE  E 136 1047 0
6  Protein   DEOXYCYTIDYLATE DEAMINASE  F 136 1047 0
7  Protein   DEOXYCYTIDYLATE DEAMINASE  G 136 1047 0
8  Protein   DEOXYCYTIDYLATE DEAMINASE  H 135 1037 0
9  Protein   DEOXYCYTIDYLATE DEAMINASE  I 135 1037 0
10  Protein   DEOXYCYTIDYLATE DEAMINASE  J 136 1047 0
11  Protein   DEOXYCYTIDYLATE DEAMINASE  K 136 1047 0
12  Protein   DEOXYCYTIDYLATE DEAMINASE  L 135 1037 0
13  Ligand   DEOXYCYTIDYLATE DEAMINASE  A 3 0 41
14  Ligand   DEOXYCYTIDYLATE DEAMINASE  B 3 0 41
15  Ligand   DEOXYCYTIDYLATE DEAMINASE  C 3 0 41
16  Ligand   DEOXYCYTIDYLATE DEAMINASE  D 3 0 41
17  Ligand   DEOXYCYTIDYLATE DEAMINASE  E 3 0 41
18  Ligand   DEOXYCYTIDYLATE DEAMINASE  F 3 0 41
19  Ligand   DEOXYCYTIDYLATE DEAMINASE  G 3 0 41
20  Ligand   DEOXYCYTIDYLATE DEAMINASE  H 3 0 41
21  Ligand   DEOXYCYTIDYLATE DEAMINASE  I 3 0 41
22  Ligand   DEOXYCYTIDYLATE DEAMINASE  J 3 0 41
23  Ligand   DEOXYCYTIDYLATE DEAMINASE  K 3 0 41
24  Ligand   DEOXYCYTIDYLATE DEAMINASE  L 3 0 41
25 Water     326 0 326
total       1991 12534 818
Proteins
Unit 1 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 2 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 3 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 4 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 5 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 6 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 7 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 8 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 9 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 10 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 11 HIS0 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Unit 12 MET1 LYS2 PRO3 GLU4 ILE5 LYS6 GLU7 ALA8 TYR9 MET10 LYS11 THR12 ALA13 GLU14 LEU15 PHE16 SER17 GLN18 VAL19 SER20 ASN21 CYS22 LYS23 ARG24 MET25 LYS26 VAL27 GLY28 ALA29 ILE30 VAL31 VAL32 LYS33 ASN34 GLY35 SER36 ILE37 LEU38 ALA39 HIS40 GLY41 TRP42 ASN43 GLY44 THR45 PRO46 SER47 GLY48 PHE49 HIS50 THR51 ASN52 CYS53 CYS54 GLU55 LEU56 GLU57 ASP58 GLY59 SER60 THR61 ASN62 PRO63 PHE64 VAL65 LEU66 HIS67 ALA68 GLU69 GLN70 ASN71 ALA72 LEU73 VAL74 LYS75 MET76 ALA77 LYS78 SER79 SER80 GLU81 SER82 ILE83 ASP84 GLY85 SER86 GLU87 LEU88 PHE89 CYS90 THR91 HIS92 SER93 PRO94 CYS95 PRO96 ASP97 CYS98 SER99 LYS100 MET101 ILE102 ALA103 GLN104 ALA105 GLY106 VAL107 LYS108 LYS109 VAL110 TYR111 TYR112 ARG113 ASN114 GLU115 TYR116 ARG117 ILE118 THR119 ASP120 GLY121 ILE122 ASP123 VAL124 LEU125 GLN126 GLN127 LEU128 GLY129 VAL130 GLU131 VAL132 GLU133 LYS134 MET135
Ligands
Unit 13 ZN201 DCM202 DU203
Unit 14 ZN201 DCM202 DU203
Unit 15 ZN201 DCM202 DU203
Unit 16 ZN201 DCM202 DU203
Unit 17 ZN201 DCM202 DU203
Unit 18 ZN201 DCM202 DU203
Unit 19 ZN201 DCM202 DU203
Unit 20 ZN201 DCM202 DU203
Unit 21 ZN201 DCM202 DU203
Unit 22 ZN201 DCM202 DU203
Unit 23 ZN201 DCM202 DU203
Unit 24 ZN201 DCM202 DU203
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany