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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE NA+-TRANSLOCATING NADH: UBIQUINONE OXIDOREDUCTASE FROM VIBRIO CHOLERAE
Keywords RESPIRATORY COMPLEX, NADH:UBIQUINONE OXIDOREDUCTASE, SODIUM TRANSLOCATION, FAD, COVALENT FMN, RIBOFLAVIN, OXIDOREDUCTAS
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4P6V     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 400 3041 0
2  Protein    B 348 2619 0
3  Protein    C 251 1902 0
4  Protein    D 179 1331 0
5  Protein    E 189 1429 0
6  Protein    F 407 3146 0
7  Ligand    B 1 0 30
8  Ligand    C 2 0 31
9  Ligand    D 1 0 1
10  Ligand    E 1 0 27
11  Ligand    F 2 0 57
total       1781 13468 146

Proteins
Unit 1 MET1 ILE2 THR3 ILE4 LYS5 LYS6 GLY7 LEU8 ASP9 LEU10 PRO11 ILE12 ALA13 GLY14 THR15 PRO16 SER17 GLN18 VAL19 ILE20 SER21 ASP22 GLY23 LYS24 ALA25 ILE26 LYS27 LYS28 VAL29 ALA30 LEU31 LEU32 GLY33 GLU34 GLU35 TYR36 VAL37 GLY38 MET39 ARG40 PRO41 THR42 MET43 HIS44 VAL45 ARG46 VAL47 GLY48 ASP49 GLU50 VAL51 LYS52 LYS53 ALA54 GLN55 ILE56 LEU57 PHE58 GLU59 ASP60 LYS61 LYS62 ASN63 PRO64 GLY65 VAL66 LYS67 PHE68 THR69 SER70 PRO71 VAL72 SER73 GLY74 LYS75 VAL76 VAL77 GLU78 ILE79 ASN80 ARG81 GLY82 ALA83 LYS84 ARG85 VAL86 LEU87 GLN88 SER89 VAL90 VAL91 ILE92 GLU93 VAL94 ALA95 GLY96 ASP97 ASP98 GLN99 VAL100 THR101 PHE102 ASP103 LYS104 PHE105 GLU106 ALA107 ASN108 GLN109 LEU110 ALA111 SER112 LEU113 ASN114 ARG115 ASP116 ALA117 ILE118 LYS119 THR120 GLN121 LEU122 VAL123 GLU124 SER125 GLY126 LEU127 TRP128 THR129 ALA130 PHE131 ARG132 THR133 ARG134 PRO135 PHE136 SER137 LYS138 VAL139 PRO140 ALA141 ILE142 ASP143 SER144 THR145 SER146 GLU147 ALA148 ILE149 PHE150 VAL151 THR152 ALA153 MET154 ASP155 THR156 ASN157 PRO158 LEU159 ALA160 ALA161 GLU162 PRO163 THR164 VAL165 VAL166 ILE167 ASN168 GLU169 GLN170 SER171 GLU172 ALA173 PHE174 VAL175 ALA176 GLY177 LEU178 ASP179 VAL180 LEU181 SER182 ALA183 LEU184 THR185 THR186 GLY187 LYS188 VAL189 TYR190 VAL191 CYS192 LYS193 LYS194 GLY195 THR196 SER197 LEU198 PRO199 ARG200 SER201 GLN202 GLN203 PRO204 ASN205 VAL206 GLU207 GLU208 HIS209 VAL210 PHE211 ASP212 GLY213 PRO214 HIS215 PRO216 ALA217 GLY218 LEU219 ALA220 GLY221 THR222 HIS223 MET224 HIS225 PHE226 LEU227 TYR228 PRO229 VAL230 SER231 ALA232 ASP233 HIS234 VAL235 ALA236 TRP237 SER238 ILE239 ASN240 TYR241 GLN242 ASP243 VAL244 ILE245 ALA246 VAL247 GLY248 GLN249 LEU250 PHE251 LEU252 THR253 GLY254 GLU255 LEU256 TYR257 THR258 GLN259 ARG260 VAL261 VAL262 SER263 LEU264 ALA265 GLY266 PRO267 VAL268 VAL269 ASN270 LYS271 PRO272 ARG273 LEU274 VAL275 ARG276 THR277 VAL278 MET279 GLY280 ALA281 SER282 LEU283 GLU284 GLN285 LEU286 VAL287 ASP288 SER289 GLU290 ILE291 MET292 PRO293 GLY294 GLU295 VAL296 ARG297 ILE298 ILE299 SER300 GLY301 SER302 VAL303 LEU304 SER305 GLY306 THR307 LYS308 ALA309 THR310 GLY311 PRO312 HIS313 ALA314 TYR315 LEU316 GLY317 ARG318 TYR319 HIS320 LEU321 GLN322 VAL323 SER324 VAL325 LEU326 ARG327 GLU328 GLY329 PRO376 ILE377 GLY378 ASN379 TYR380 GLU381 LYS382 VAL383 MET384 PRO385 LEU386 ASP387 MET388 GLU389 PRO390 THR391 LEU392 LEU393 LEU394 ARG395 ASP396 LEU397 CYS398 ALA399 GLY400 ASP401 SER402 ASP403 SER404 ALA405 VAL406 ARG407 LEU408 GLY409 ALA410 LEU411 GLU412 LEU413 ASP414 GLU415 GLU416 ASP417 LEU418 ALA419 LEU420 CYS421 THR422 PHE423 VAL424 CYS425 PRO426 GLY427 LYS428 TYR429 GLU430 TYR431 GLY432 GLN433 LEU434 LEU435 ARG436 GLU437 CYS438 LEU439 ASP440 LYS441 ILE442 GLU443 LYS444 GLU445 GLY446
Unit 2 GLY38 LEU39 VAL40 THR41 LYS42 ARG43 SER44 SER45 HIS46 VAL47 ARG48 ASP49 SER50 VAL51 ASP52 LEU53 LYS54 ARG55 ILE56 MET57 ILE58 MET59 VAL60 TRP61 LEU62 ALA63 VAL64 PHE65 PRO66 ALA67 MET68 PHE69 TRP70 GLY71 MET72 TYR73 ASN74 ALA75 GLY76 GLY77 GLN78 ALA79 ILE80 ALA81 ALA82 LEU83 ASN84 HIS85 LEU86 TYR87 SER88 GLY89 ASP90 GLN91 LEU92 ALA93 ALA94 ILE95 VAL96 ALA97 GLY98 ASN99 TRP100 HIS101 TYR102 TRP103 LEU104 THR105 GLU106 MET107 LEU108 GLY109 GLY110 THR111 MET112 GLY119 SER120 LYS121 MET122 LEU123 LEU124 GLY125 ALA126 THR127 TYR128 PHE129 LEU130 PRO131 ILE132 TYR133 ALA134 THR135 VAL136 PHE137 ILE138 VAL139 GLY140 GLY141 PHE142 TRP143 GLU144 VAL145 LEU146 PHE147 CYS148 MET149 VAL150 ARG151 LYS152 HIS153 GLU154 VAL155 ASN156 GLU157 GLY158 PHE159 PHE160 VAL161 THR162 SER163 ILE164 LEU165 PHE166 ALA167 LEU168 ILE169 VAL170 PRO171 PRO172 THR173 LEU174 PRO175 LEU176 TRP177 GLN178 ALA179 ALA180 LEU181 GLY182 ILE183 THR184 PHE185 GLY186 VAL187 VAL188 VAL189 ALA190 LYS191 GLU192 VAL193 PHE194 GLY195 GLY196 THR197 GLY198 ARG199 ASN200 PHE201 LEU202 ASN203 PRO204 ALA205 LEU206 ALA207 GLY208 ARG209 ALA210 PHE211 LEU212 PHE213 PHE214 ALA215 TYR216 PRO217 ALA218 GLN219 ILE220 SER221 GLY222 ASP223 LEU224 VAL225 TRP226 THR227 ALA228 ALA229 ASP230 GLY231 TYR232 SER233 GLY234 ALA235 THR236 ALA237 LEU238 SER239 GLN240 TRP241 ALA242 GLN243 GLY244 GLY245 ALA246 GLY247 ALA248 LEU249 ILE250 ASN267 ILE268 PRO269 GLY270 SER271 ILE272 GLY273 GLU274 VAL275 SER276 THR277 LEU278 ALA279 LEU280 MET281 ILE282 GLY283 ALA284 ALA285 PHE286 ILE287 VAL288 TYR289 MET290 GLY291 ILE292 ALA293 SER294 TRP295 ARG296 ILE297 ILE298 GLY299 GLY300 VAL301 MET302 ILE303 GLY304 MET305 ILE306 LEU307 LEU308 SER309 THR310 LEU311 PHE312 ASN313 VAL314 ILE315 GLY316 SER317 ASP318 THR319 ASN320 ALA321 MET322 PHE323 ASN324 MET325 PRO326 TRP329 HIS330 LEU331 VAL332 LEU333 GLY334 GLY335 PHE336 ALA337 PHE338 GLY339 MET340 PHE341 PHE342 MET343 ALA344 THR345 ASP346 PRO347 VAL348 SER349 ALA350 SER351 PHE352 THR353 ASN354 SER355 GLY356 LYS357 TRP358 ALA359 TYR360 GLY361 ILE362 LEU363 ILE364 GLY365 VAL366 MET367 CYS368 VAL369 LEU370 ILE371 ARG372 VAL373 VAL374 ASN375 PRO376 ALA377 TYR378 PRO379 GLU380 GLY381 MET382 MET383 LEU384 ALA385 ILE386 LEU387 PHE388 ALA389 ASN390 LEU391 PHE392 ALA393 PRO394 LEU395 PHE396 ASP397 HIS398 VAL399 VAL400 VAL401 GLU402 ARG403 ASN404 ILE405 LYS406 ARG407 ARG408 LEU409
Unit 3 ASP6 SER7 ILE8 LYS9 LYS10 THR11 LEU12 PHE13 VAL14 VAL15 ILE16 ALA17 LEU18 SER19 LEU20 VAL21 CYS22 SER23 ILE24 ILE25 VAL26 SER27 ALA28 ALA29 ALA30 VAL31 GLY32 LEU33 ARG34 ASP35 LYS36 GLN37 LYS38 GLU39 ASN40 ALA41 ALA42 LEU43 ASP44 LYS45 GLN46 SER47 LYS48 ILE49 LEU50 GLN51 VAL52 ALA53 GLY54 ILE55 GLU56 ALA57 LYS58 GLY59 SER60 LYS61 GLN62 ILE63 VAL64 GLU65 LEU66 PHE67 ASN68 LYS69 SER70 ILE71 GLU72 PRO73 ARG74 LEU75 VAL76 ASP77 PHE78 ASN79 THR80 GLY81 ASP82 PHE83 VAL84 GLU85 GLY86 ASP87 ALA88 ALA89 ASN90 TYR91 ASP92 GLN93 ARG94 LYS95 ALA96 ALA97 LYS98 GLU99 ALA100 SER101 GLU102 SER103 ILE104 LYS105 LEU106 THR107 ALA108 GLU109 GLN110 ASP111 LYS112 ALA113 LYS114 ILE115 GLN116 ARG117 ARG118 ALA119 ASN120 VAL121 GLY122 VAL123 VAL124 TYR125 LEU126 VAL127 LYS128 ASP129 GLY130 ASP131 LYS132 THR133 SER134 LYS135 VAL136 ILE137 LEU138 PRO139 VAL140 HIS141 GLY142 ASN143 GLY144 LEU145 TRP146 SER147 MET148 MET149 TYR150 ALA151 PHE152 VAL153 ALA154 VAL155 GLU156 THR157 ASP158 GLY159 ASN160 THR161 VAL162 SER163 GLY164 LEU165 THR166 TYR167 TYR168 GLU169 GLN170 GLY171 GLU172 THR173 PRO174 GLY175 LEU176 GLY177 GLY178 GLU179 VAL180 GLU181 ASN182 PRO183 ALA184 TRP185 ARG186 ALA187 GLN188 TRP189 VAL190 GLY191 LYS192 LYS193 LEU194 PHE195 ASP196 GLU197 ASN198 HIS199 LYS200 PRO201 ALA202 ILE203 LYS204 ILE205 VAL206 LYS207 GLY208 GLY209 ALA210 PRO211 GLN212 GLY213 SER214 GLU215 HIS216 GLY217 VAL218 ASP219 GLY220 LEU221 SER222 GLY223 ALA224 THR225 LEU226 THR227 SER228 ASN229 GLY230 VAL231 GLN232 ASN233 THR234 PHE235 ASP236 PHE237 TRP238 LEU239 GLY240 ASP241 MET242 GLY243 PHE244 GLY245 PRO246 PHE247 LEU248 THR249 LYS250 VAL251 ARG252 ASP253 GLY254 GLY255 LEU256
Unit 4 LEU7 LYS8 LYS9 SER10 VAL11 LEU12 ALA13 PRO14 VAL15 LEU16 ASP17 ASN18 ASN19 PRO20 ILE21 ALA22 LEU23 GLN24 VAL25 LEU26 GLY27 VAL28 CYS29 SER30 ALA31 LEU32 ALA33 VAL34 THR35 THR36 LYS37 LEU38 GLU39 THR40 ALA41 PHE42 VAL43 MET44 THR45 LEU46 ALA47 VAL48 MET49 PHE50 VAL51 THR52 ALA53 LEU54 SER55 ASN56 PHE57 PHE58 VAL59 SER60 LEU61 ILE62 ARG63 ASN64 VAL70 ARG71 ILE72 ILE73 VAL74 GLN75 MET76 ALA77 ILE78 ILE79 ALA80 SER81 LEU82 VAL83 ILE84 VAL85 VAL86 ASP87 GLN88 ILE89 LEU90 LYS91 ASP96 ILE97 SER98 LYS99 GLN100 LEU101 SER102 VAL103 PHE104 VAL105 GLY106 LEU107 ILE108 ILE109 THR110 ASN111 CYS112 ILE113 VAL114 MET115 GLY116 ARG117 ALA118 GLU119 ALA120 PHE121 ALA122 PRO127 ILE128 PRO129 SER130 PHE131 ILE132 ASP133 GLY134 ILE135 GLY136 ASN137 GLY138 LEU139 GLY140 TYR141 GLY142 PHE143 VAL144 LEU145 MET146 THR147 VAL148 GLY149 PHE150 PHE151 ARG152 GLU153 LEU154 LEU155 GLY156 SER157 GLY158 LYS159 LEU160 PHE161 GLY162 LEU163 GLU164 VAL165 LEU166 PRO177 ASN178 GLY179 LEU180 MET181 LEU182 LEU183 ALA184 PRO185 SER186 ALA187 PHE188 PHE189 LEU190 ILE191 GLY192 PHE193 MET194 ILE195 TRP196 ALA197 ILE198 ARG199 THR200 PHE201 LYS202 PRO203 GLU204 GLN205 VAL206 GLU207 ALA208
Unit 5 TYR4 ILE5 SER6 LEU7 LEU8 VAL9 LYS10 SER11 ILE12 PHE13 ILE14 GLU15 ASN16 MET17 ALA18 LEU19 SER20 PHE21 PHE22 LEU23 GLY24 MET25 CYS26 THR27 PHE28 LEU29 ALA30 VAL31 SER32 LYS33 LYS34 VAL35 LYS36 THR37 SER38 PHE39 GLY40 LEU41 GLY42 ILE43 ALA44 VAL45 ILE46 VAL47 VAL48 LEU49 THR50 ILE51 SER52 VAL53 PRO54 VAL55 ASN56 ASN57 LEU58 VAL59 TYR60 ASN61 LEU62 VAL63 LEU64 LYS65 PRO66 ASP67 ALA68 LEU69 VAL70 GLU71 PHE77 LEU78 ASN79 PHE80 ILE81 THR82 PHE83 ILE84 GLY85 VAL86 ILE87 ALA88 ALA89 LEU90 VAL91 GLN92 ILE93 LEU94 GLU95 MET96 ILE97 LEU98 ASP99 ARG100 PHE101 PHE102 PRO103 PRO104 LEU105 TYR106 ASN107 ALA108 LEU109 GLY110 ILE111 PHE112 LEU113 PRO114 LEU115 ILE116 THR117 VAL118 ASN119 CYS120 ALA121 ILE122 PHE123 GLY124 GLY125 VAL126 SER127 PHE128 MET129 VAL130 GLN131 ARG132 ASP133 TYR134 SER135 PHE136 ALA137 GLU138 SER139 VAL140 VAL141 TYR142 GLY143 PHE144 GLY145 SER146 GLY147 VAL148 GLY149 TRP150 MET151 LEU152 ALA153 ILE154 VAL155 ALA156 LEU157 ALA158 GLY159 ILE160 ARG161 GLU162 LYS163 MET164 LYS165 TYR166 SER167 ASP168 VAL169 PRO170 PRO171 GLY172 LEU173 ARG174 GLY175 LEU176 GLY177 ILE178 THR179 PHE180 ILE181 THR182 ALA183 GLY184 LEU185 MET186 ALA187 LEU188 GLY189 PHE190 MET191 SER192 PHE193 SER194 GLY195 VAL196 GLN197
Unit 6 SER2 THR3 ILE4 ILE5 PHE6 GLY7 VAL8 VAL9 MET10 PHE11 THR12 LEU13 ILE14 ILE15 LEU16 ALA17 LEU18 VAL19 LEU20 VAL21 ILE22 LEU23 PHE24 ALA25 LYS26 SER27 LYS28 LEU29 VAL30 PRO31 THR32 GLY33 ASP34 ILE35 THR36 ILE37 SER38 ILE39 ASN40 GLY41 ASP42 PRO43 GLU44 LYS45 ALA46 ILE47 VAL48 THR49 GLN50 PRO51 GLY52 GLY53 LYS54 LEU55 LEU56 THR57 ALA58 LEU59 ALA60 GLY61 ALA62 GLY63 VAL64 PHE65 VAL66 SER67 SER68 ALA69 CYS70 GLY71 GLY72 GLY73 GLY74 SER75 CYS76 GLY77 GLN78 CYS79 ARG80 VAL81 LYS82 ILE83 LYS84 SER85 GLY86 GLY87 GLY88 ASP89 ILE90 LEU91 PRO92 THR93 GLU94 LEU95 ASP96 HIS97 ILE98 SER99 LYS100 GLY101 GLU102 ALA103 ARG104 GLU105 GLY106 GLU107 ARG108 LEU109 ALA110 CYS111 GLN112 VAL113 ALA114 VAL115 LYS116 ALA117 ASP118 MET119 ASP120 LEU121 GLU122 LEU123 PRO124 GLU125 GLU126 ILE127 PHE128 GLY129 VAL130 LYS131 LYS132 TRP133 GLU134 CYS135 THR136 VAL137 ILE138 SER139 ASN140 ASP141 ASN142 LYS143 ALA144 THR145 PHE146 ILE147 LYS148 GLU149 LEU150 LYS151 LEU152 ALA153 ILE154 PRO155 ASP156 GLY157 GLU158 SER159 VAL160 PRO161 PHE162 ARG163 ALA164 GLY165 GLY166 TYR167 ILE168 GLN169 ILE170 GLU171 ALA172 PRO173 ALA174 HIS175 HIS176 VAL177 LYS178 TYR179 ALA180 ASP181 PHE182 ASP183 VAL184 PRO185 GLU186 LYS187 TYR188 ARG189 GLY190 ASP191 TRP192 ASP193 LYS194 PHE195 ASN196 LEU197 PHE198 ARG199 TYR200 GLU201 SER202 LYS203 VAL204 ASP205 GLU206 PRO207 ILE208 ILE209 ARG210 ALA211 TYR212 SER213 MET214 ALA215 ASN216 TYR217 PRO218 GLU219 GLU220 PHE221 GLY222 ILE223 ILE224 MET225 LEU226 ASN227 VAL228 ARG229 ILE230 ALA231 THR232 PRO233 PRO234 PRO235 ASN236 ASN237 PRO238 ASN239 VAL240 PRO241 PRO242 GLY243 GLN244 MET245 SER246 SER247 TYR248 ILE249 TRP250 SER251 LEU252 LYS253 ALA254 GLY255 ASP256 LYS257 CYS258 THR259 ILE260 SER261 GLY262 PRO263 PHE264 GLY265 GLU266 PHE267 PHE268 ALA269 LYS270 ASP271 THR272 ASP273 ALA274 GLU275 MET276 VAL277 PHE278 ILE279 GLY280 GLY281 GLY282 ALA283 GLY284 MET285 ALA286 PRO287 MET288 ARG289 SER290 HIS291 ILE292 PHE293 ASP294 GLN295 LEU296 LYS297 ARG298 LEU299 LYS300 SER301 LYS302 ARG303 LYS304 MET305 SER306 TYR307 TRP308 TYR309 GLY310 ALA311 ARG312 SER313 LYS314 ARG315 GLU316 MET317 PHE318 TYR319 VAL320 GLU321 ASP322 PHE323 ASP324 GLY325 LEU326 ALA327 ALA328 GLU329 ASN330 ASP331 ASN332 PHE333 VAL334 TRP335 HIS336 CYS337 ALA338 LEU339 SER340 ASP341 PRO342 GLN343 PRO344 GLU345 ASP346 ASN347 TRP348 THR349 GLY350 TYR351 THR352 GLY353 PHE354 ILE355 HIS356 ASN357 VAL358 LEU359 TYR360 GLU361 ASN362 TYR363 LEU364 LYS365 ASP366 HIS367 GLU368 ALA369 PRO370 GLU371 ASP372 CYS373 GLU374 TYR375 TYR376 MET377 CYS378 GLY379 PRO380 PRO381 MET382 MET383 ASN384 ALA385 ALA386 VAL387 ILE388 ASN389 MET390 LEU391 LYS392 ASN393 LEU394 GLY395 VAL396 GLU397 GLU398 GLU399 ASN400 ILE401 LEU402 LEU403 ASP404 ASP405 PHE406 GLY407 GLY408

Ligands
Unit 7 FMN600
Unit 8 FMN301 CA302
Unit 9 FE301
Unit 10 RBF201
Unit 11 FES501 FAD502

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany