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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS OF CHRONIC BERYLLIUM DISEASE: BRIDGING THE BETWEEN ALLERGIC HYPERSENSITIVITY AND AUTOIMMUNITY
Keywords CBD, AUTOIMMUNITY, BERYLLIUM, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4P5M     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 180 1473 0
2  Protein   PEPTIDE,HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, CHAIN  B 199 1634 0
3  Protein    C 180 1473 0
4  Protein   PEPTIDE,HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, CHAIN  D 199 1634 0
5  Protein    E 180 1473 0
6  Protein   PEPTIDE,HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, CHAIN  F 190 1559 0
7  Protein    G 180 1473 0
8  Protein   PEPTIDE,HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, CHAIN  H 191 1565 0
9  Ligand    I 2 0 28
10  Ligand    J 4 0 56
11  Ligand    K 2 0 28
12  Ligand    L 3 0 42
13  Ligand    M 4 0 53
14  Ligand    N 2 0 28
15  Ligand    O 3 0 39
16  Ligand    A 1 0 1
17  Ligand    C 1 0 1
18  Ligand    E 1 0 14
19 Water     1660 0 1660
total       3182 12284 1950
Proteins
Unit 1 ILE1 LYS2 ALA3 ASP4 HIS5 VAL6 SER7 THR8 TYR9 ALA10 ALA11 PHE12 VAL13 GLN14 THR15 HIS16 ARG17 PRO18 THR19 GLY20 GLU21 PHE22 MET23 PHE24 GLU25 PHE26 ASP27 GLU28 ASP29 GLU30 MET31 PHE32 TYR33 VAL34 ASP35 LEU36 ASP37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 HIS44 LEU45 GLU46 GLU47 PHE48 GLY49 GLN50 ALA51 PHE52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 GLY59 LEU60 ALA61 ASN62 ILE63 ALA64 ILE65 LEU66 ASN67 ASN68 ASN69 LEU70 ASN71 THR72 LEU73 ILE74 GLN75 ARG76 SER77 ASN78 HIS79 THR80 GLN81 ALA82 THR83 ASN84 ASP85 PRO86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 PRO93 LYS94 GLU95 PRO96 VAL97 GLU98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 HIS108 ILE109 ASP110 LYS111 PHE112 PHE113 PRO114 PRO115 VAL116 LEU117 ASN118 VAL119 THR120 TRP121 LEU122 CYS123 ASN124 GLY125 GLU126 LEU127 VAL128 THR129 GLU130 GLY131 VAL132 ALA133 GLU134 SER135 LEU136 PHE137 LEU138 PRO139 ARG140 THR141 ASP142 TYR143 SER144 PHE145 HIS146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 VAL154 PRO155 SER156 ALA157 GLU158 ASP159 PHE160 TYR161 ASP162 CYS163 ARG164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLN172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 ALA180
Unit 2 GLN-25 ALA-24 TYR-23 ASP-22 GLY-21 LYS-20 ASP-19 TYR-18 ILE-17 ALA-16 LEU-15 LYS-14 GLY-13 PRO4 GLU5 ASN6 TYR7 LEU8 PHE9 GLN10 GLY11 ARG12 GLN13 GLU14 CYS15 TYR16 ALA17 PHE18 ASN19 GLY20 THR21 GLN22 ARG23 PHE24 LEU25 GLU26 ARG27 TYR28 ILE29 TYR30 ASN31 ARG32 GLU33 GLU34 PHE35 VAL36 ARG37 PHE38 ASP39 SER40 ASP41 VAL42 GLY43 GLU44 PHE45 ARG46 ALA47 VAL48 THR49 GLU50 LEU51 GLY52 ARG53 PRO54 ASP55 GLU56 GLU57 TYR58 TRP59 ASN60 SER61 GLN62 LYS63 ASP64 ILE65 LEU66 GLU67 GLU68 GLU69 ARG70 ALA71 VAL72 PRO73 ASP74 ARG75 MET76 CYS77 ARG78 HIS79 ASN80 TYR81 GLU82 LEU83 GLY84 GLY85 PRO86 MET87 THR88 LEU89 GLN90 ARG91 ARG92 VAL93 GLN94 PRO95 ARG96 VAL97 ASN98 VAL99 SER100 PRO101 SER102 LYS103 LYS104 GLY105 PRO106 LEU107 GLN108 HIS109 HIS110 ASN111 LEU112 LEU113 VAL114 CYS115 HIS116 VAL117 THR118 ASP119 PHE120 TYR121 PRO122 GLY123 SER124 ILE125 GLN126 VAL127 ARG128 TRP129 PHE130 LEU131 ASN132 GLY133 GLN134 GLU135 GLU136 THR137 ALA138 GLY139 VAL140 VAL141 SER142 THR143 ASN144 LEU145 ILE146 ARG147 ASN148 GLY149 ASP150 TRP151 THR152 PHE153 GLN154 ILE155 LEU156 VAL157 MET158 LEU159 GLU160 MET161 THR162 PRO163 GLN164 GLN165 GLY166 ASP167 VAL168 TYR169 THR170 CYS171 GLN172 VAL173 GLU174 HIS175 THR176 SER177 LEU178 ASP179 SER180 PRO181 VAL182 THR183 VAL184 GLU185 TRP186 LYS187 ALA188 GLN189
Unit 3 ILE1 LYS2 ALA3 ASP4 HIS5 VAL6 SER7 THR8 TYR9 ALA10 ALA11 PHE12 VAL13 GLN14 THR15 HIS16 ARG17 PRO18 THR19 GLY20 GLU21 PHE22 MET23 PHE24 GLU25 PHE26 ASP27 GLU28 ASP29 GLU30 MET31 PHE32 TYR33 VAL34 ASP35 LEU36 ASP37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 HIS44 LEU45 GLU46 GLU47 PHE48 GLY49 GLN50 ALA51 PHE52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 GLY59 LEU60 ALA61 ASN62 ILE63 ALA64 ILE65 LEU66 ASN67 ASN68 ASN69 LEU70 ASN71 THR72 LEU73 ILE74 GLN75 ARG76 SER77 ASN78 HIS79 THR80 GLN81 ALA82 THR83 ASN84 ASP85 PRO86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 PRO93 LYS94 GLU95 PRO96 VAL97 GLU98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 HIS108 ILE109 ASP110 LYS111 PHE112 PHE113 PRO114 PRO115 VAL116 LEU117 ASN118 VAL119 THR120 TRP121 LEU122 CYS123 ASN124 GLY125 GLU126 LEU127 VAL128 THR129 GLU130 GLY131 VAL132 ALA133 GLU134 SER135 LEU136 PHE137 LEU138 PRO139 ARG140 THR141 ASP142 TYR143 SER144 PHE145 HIS146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 VAL154 PRO155 SER156 ALA157 GLU158 ASP159 PHE160 TYR161 ASP162 CYS163 ARG164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLN172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 ALA180
Unit 4 GLN-25 ALA-24 TYR-23 ASP-22 GLY-21 LYS-20 ASP-19 TYR-18 ILE-17 ALA-16 LEU-15 LYS-14 GLY-13 PRO4 GLU5 ASN6 TYR7 LEU8 PHE9 GLN10 GLY11 ARG12 GLN13 GLU14 CYS15 TYR16 ALA17 PHE18 ASN19 GLY20 THR21 GLN22 ARG23 PHE24 LEU25 GLU26 ARG27 TYR28 ILE29 TYR30 ASN31 ARG32 GLU33 GLU34 PHE35 VAL36 ARG37 PHE38 ASP39 SER40 ASP41 VAL42 GLY43 GLU44 PHE45 ARG46 ALA47 VAL48 THR49 GLU50 LEU51 GLY52 ARG53 PRO54 ASP55 GLU56 GLU57 TYR58 TRP59 ASN60 SER61 GLN62 LYS63 ASP64 ILE65 LEU66 GLU67 GLU68 GLU69 ARG70 ALA71 VAL72 PRO73 ASP74 ARG75 MET76 CYS77 ARG78 HIS79 ASN80 TYR81 GLU82 LEU83 GLY84 GLY85 PRO86 MET87 THR88 LEU89 GLN90 ARG91 ARG92 VAL93 GLN94 PRO95 ARG96 VAL97 ASN98 VAL99 SER100 PRO101 SER102 LYS103 LYS104 GLY105 PRO106 LEU107 GLN108 HIS109 HIS110 ASN111 LEU112 LEU113 VAL114 CYS115 HIS116 VAL117 THR118 ASP119 PHE120 TYR121 PRO122 GLY123 SER124 ILE125 GLN126 VAL127 ARG128 TRP129 PHE130 LEU131 ASN132 GLY133 GLN134 GLU135 GLU136 THR137 ALA138 GLY139 VAL140 VAL141 SER142 THR143 ASN144 LEU145 ILE146 ARG147 ASN148 GLY149 ASP150 TRP151 THR152 PHE153 GLN154 ILE155 LEU156 VAL157 MET158 LEU159 GLU160 MET161 THR162 PRO163 GLN164 GLN165 GLY166 ASP167 VAL168 TYR169 THR170 CYS171 GLN172 VAL173 GLU174 HIS175 THR176 SER177 LEU178 ASP179 SER180 PRO181 VAL182 THR183 VAL184 GLU185 TRP186 LYS187 ALA188 GLN189
Unit 5 ILE1 LYS2 ALA3 ASP4 HIS5 VAL6 SER7 THR8 TYR9 ALA10 ALA11 PHE12 VAL13 GLN14 THR15 HIS16 ARG17 PRO18 THR19 GLY20 GLU21 PHE22 MET23 PHE24 GLU25 PHE26 ASP27 GLU28 ASP29 GLU30 MET31 PHE32 TYR33 VAL34 ASP35 LEU36 ASP37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 HIS44 LEU45 GLU46 GLU47 PHE48 GLY49 GLN50 ALA51 PHE52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 GLY59 LEU60 ALA61 ASN62 ILE63 ALA64 ILE65 LEU66 ASN67 ASN68 ASN69 LEU70 ASN71 THR72 LEU73 ILE74 GLN75 ARG76 SER77 ASN78 HIS79 THR80 GLN81 ALA82 THR83 ASN84 ASP85 PRO86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 PRO93 LYS94 GLU95 PRO96 VAL97 GLU98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 HIS108 ILE109 ASP110 LYS111 PHE112 PHE113 PRO114 PRO115 VAL116 LEU117 ASN118 VAL119 THR120 TRP121 LEU122 CYS123 ASN124 GLY125 GLU126 LEU127 VAL128 THR129 GLU130 GLY131 VAL132 ALA133 GLU134 SER135 LEU136 PHE137 LEU138 PRO139 ARG140 THR141 ASP142 TYR143 SER144 PHE145 HIS146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 VAL154 PRO155 SER156 ALA157 GLU158 ASP159 PHE160 TYR161 ASP162 CYS163 ARG164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLN172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 ALA180
Unit 6 GLN-25 ALA-24 TYR-23 ASP-22 GLY-21 LYS-20 ASP-19 TYR-18 ILE-17 ALA-16 LEU-15 LYS-14 GLY-13 PRO4 GLU5 ASN6 TYR7 LEU8 PHE9 GLN10 GLY11 ARG12 GLN13 GLU14 CYS15 TYR16 ALA17 PHE18 ASN19 GLY20 THR21 GLN22 ARG23 PHE24 LEU25 GLU26 ARG27 TYR28 ILE29 TYR30 ASN31 ARG32 GLU33 GLU34 PHE35 VAL36 ARG37 PHE38 ASP39 SER40 ASP41 VAL42 GLY43 GLU44 PHE45 ARG46 ALA47 VAL48 THR49 GLU50 LEU51 GLY52 ARG53 PRO54 ASP55 GLU56 GLU57 TYR58 TRP59 ASN60 SER61 GLN62 LYS63 ASP64 ILE65 LEU66 GLU67 GLU68 GLU69 ARG70 ALA71 VAL72 PRO73 ASP74 ARG75 MET76 CYS77 ARG78 HIS79 ASN80 TYR81 GLU82 LEU83 GLY84 GLY85 PRO86 MET87 THR88 LEU89 GLN90 ARG91 ARG92 VAL93 GLN94 PRO95 ARG96 VAL97 ASN98 VAL99 SER100 PRO101 SER102 ASN111 LEU112 LEU113 VAL114 CYS115 HIS116 VAL117 THR118 ASP119 PHE120 TYR121 PRO122 GLY123 SER124 ILE125 GLN126 VAL127 ARG128 TRP129 PHE130 LEU131 ASN132 GLY133 GLN134 GLU135 GLU136 THR137 ALA138 GLY139 VAL140 VAL141 SER142 THR143 ASN144 LEU145 ILE146 ARG147 ASN148 GLY149 ASP150 TRP151 THR152 PHE153 GLN154 ILE155 LEU156 VAL157 MET158 LEU159 GLU160 MET161 THR162 PRO163 GLN164 GLN165 GLY166 ASP167 VAL168 TYR169 THR170 CYS171 GLN172 VAL173 GLU174 HIS175 THR176 SER177 LEU178 ASP179 SER180 PRO181 VAL182 THR183 VAL184 GLU185 TRP186 LYS187 ALA188
Unit 7 ILE1 LYS2 ALA3 ASP4 HIS5 VAL6 SER7 THR8 TYR9 ALA10 ALA11 PHE12 VAL13 GLN14 THR15 HIS16 ARG17 PRO18 THR19 GLY20 GLU21 PHE22 MET23 PHE24 GLU25 PHE26 ASP27 GLU28 ASP29 GLU30 MET31 PHE32 TYR33 VAL34 ASP35 LEU36 ASP37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 HIS44 LEU45 GLU46 GLU47 PHE48 GLY49 GLN50 ALA51 PHE52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 GLY59 LEU60 ALA61 ASN62 ILE63 ALA64 ILE65 LEU66 ASN67 ASN68 ASN69 LEU70 ASN71 THR72 LEU73 ILE74 GLN75 ARG76 SER77 ASN78 HIS79 THR80 GLN81 ALA82 THR83 ASN84 ASP85 PRO86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 PRO93 LYS94 GLU95 PRO96 VAL97 GLU98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 HIS108 ILE109 ASP110 LYS111 PHE112 PHE113 PRO114 PRO115 VAL116 LEU117 ASN118 VAL119 THR120 TRP121 LEU122 CYS123 ASN124 GLY125 GLU126 LEU127 VAL128 THR129 GLU130 GLY131 VAL132 ALA133 GLU134 SER135 LEU136 PHE137 LEU138 PRO139 ARG140 THR141 ASP142 TYR143 SER144 PHE145 HIS146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 VAL154 PRO155 SER156 ALA157 GLU158 ASP159 PHE160 TYR161 ASP162 CYS163 ARG164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLN172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 ALA180
Unit 8 GLN-25 ALA-24 TYR-23 ASP-22 GLY-21 LYS-20 ASP-19 TYR-18 ILE-17 ALA-16 LEU-15 LYS-14 GLY-13 SER3 PRO4 GLU5 ASN6 TYR7 LEU8 PHE9 GLN10 GLY11 ARG12 GLN13 GLU14 CYS15 TYR16 ALA17 PHE18 ASN19 GLY20 THR21 GLN22 ARG23 PHE24 LEU25 GLU26 ARG27 TYR28 ILE29 TYR30 ASN31 ARG32 GLU33 GLU34 PHE35 VAL36 ARG37 PHE38 ASP39 SER40 ASP41 VAL42 GLY43 GLU44 PHE45 ARG46 ALA47 VAL48 THR49 GLU50 LEU51 GLY52 ARG53 PRO54 ASP55 GLU56 GLU57 TYR58 TRP59 ASN60 SER61 GLN62 LYS63 ASP64 ILE65 LEU66 GLU67 GLU68 GLU69 ARG70 ALA71 VAL72 PRO73 ASP74 ARG75 MET76 CYS77 ARG78 HIS79 ASN80 TYR81 GLU82 LEU83 GLY84 GLY85 PRO86 MET87 THR88 LEU89 GLN90 ARG91 ARG92 VAL93 GLN94 PRO95 ARG96 VAL97 ASN98 VAL99 SER100 PRO101 SER102 ASN111 LEU112 LEU113 VAL114 CYS115 HIS116 VAL117 THR118 ASP119 PHE120 TYR121 PRO122 GLY123 SER124 ILE125 GLN126 VAL127 ARG128 TRP129 PHE130 LEU131 ASN132 GLY133 GLN134 GLU135 GLU136 THR137 ALA138 GLY139 VAL140 VAL141 SER142 THR143 ASN144 LEU145 ILE146 ARG147 ASN148 GLY149 ASP150 TRP151 THR152 PHE153 GLN154 ILE155 LEU156 VAL157 MET158 LEU159 GLU160 MET161 THR162 PRO163 GLN164 GLN165 GLY166 ASP167 VAL168 TYR169 THR170 CYS171 GLN172 VAL173 GLU174 HIS175 THR176 SER177 LEU178 ASP179 SER180 PRO181 VAL182 THR183 VAL184 GLU185 TRP186 LYS187 ALA188
Ligands
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2 NAG3 NAG4
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2 NAG3
Unit 13 NAG1 NAG2 NAG3 BMA4
Unit 14 NAG1 NAG2
Unit 15 NAG1 BMA2 NAG3
Unit 16 NA201
Unit 17 NA201
Unit 18 NAG201
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany