4P5A - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A UMP/DUMP METHYLASE POLB FROM STREPTOM CACAOI BOUND WITH 5-BR UMP
• Keywords: TETRAMER, UMP/DUMP METHYLASE, THYX HOMOLOG, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4P5A	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THYMIDYLATE SYNTHASE THYX	A	226	1805	0
2	Protein	THYMIDYLATE SYNTHASE THYX	B	227	1820	0
3	Protein	THYMIDYLATE SYNTHASE THYX	C	223	1792	0
4	Protein	THYMIDYLATE SYNTHASE THYX	D	225	1801	0
5	Ligand	THYMIDYLATE SYNTHASE THYX	A	2	0	75
6	Ligand	THYMIDYLATE SYNTHASE THYX	B	2	0	75
7	Ligand	THYMIDYLATE SYNTHASE THYX	C	2	0	75
8	Ligand	THYMIDYLATE SYNTHASE THYX	D	2	0	75
9	Water			733	0	733
total				1642	7218	1033

Proteins

Unit 1	PRO 4 ARG 5 ILE 6 GLU 7 LEU 8 ARG 9 SER 10 ASP 11 ILE 12 THR 13 VAL 14 GLU 15 LEU 16 VAL 17 ASP 18 SER 19 SER 20 ALA 21 SER 22 ASP 23 LEU 24 ALA 25 VAL 26 VAL 27 LYS 28 ALA 29 ALA 30 ARG 31 VAL 32 SER 33 THR 34 ALA 35 GLY 36 GLY 47 SER 48 THR 49 ARG 50 GLY 51 LEU 52 ILE 53 ARG 54 TYR 55 LEU 56 MET 57 ARG 58 SER 59 ARG 60 HIS 61 GLY 62 SER 63 PRO 64 PHE 65 GLU 66 HIS 67 ASN 68 SER 69 MET 70 THR 71 PHE 72 LEU 73 VAL 74 ARG 75 ALA 76 PRO 77 ILE 78 PHE 79 THR 80 VAL 81 ARG 82 HIS 83 LEU 84 MET 85 ARG 86 HIS 87 ARG 88 THR 89 TRP 90 SER 91 PHE 92 ASN 93 GLU 94 GLU 95 SER 96 ALA 97 ARG 98 TYR 99 ARG 100 GLU 101 VAL 102 GLY 103 ALA 104 ALA 105 PHE 106 TYR 107 VAL 108 PRO 109 ASP 110 ALA 111 THR 112 ARG 113 LEU 114 LEU 115 ARG 116 GLN 117 GLU 118 GLY 119 LYS 120 PRO 121 GLY 122 ASP 123 TYR 124 ARG 125 TYR 126 VAL 127 GLY 128 GLY 129 SER 130 THR 131 ASP 132 ASP 133 HIS 134 GLN 135 GLN 136 VAL 137 VAL 138 ARG 139 SER 140 ALA 141 THR 142 ARG 143 ALA 144 TYR 145 GLU 146 VAL 147 ALA 148 PHE 149 GLU 150 GLU 151 TYR 152 GLN 153 ARG 154 LEU 155 LEU 156 ASP 157 SER 158 GLY 159 ILE 160 ALA 161 ARG 162 GLU 163 ILE 164 ALA 165 ARG 166 LEU 167 VAL 168 LEU 169 PRO 170 VAL 171 SER 172 THR 173 TYR 174 SER 175 VAL 176 LEU 177 TYR 178 ALA 179 THR 180 CYS 181 ASN 182 ALA 183 ARG 184 ALA 185 LEU 186 MET 187 HIS 188 PHE 189 LEU 190 SER 191 LEU 192 ARG 193 THR 194 HIS 195 ARG 196 PRO 197 ASP 198 ALA 199 ALA 200 TYR 201 VAL 202 SER 203 HIS 204 PRO 205 GLN 206 ARG 207 GLU 208 ILE 209 GLU 210 MET 211 VAL 212 ALA 213 GLU 214 GLN 215 MET 216 GLU 217 THR 218 ALA 219 TRP 220 ALA 221 LYS 222 LEU 223 MET 224 PRO 225 VAL 226 THR 227 HIS 228 GLU 229 ALA 230 PHE 231 THR 232 ALA 233 PHE 234 GLY 235 ARG 236 VAL 237 SER 238 PRO 239
Unit 2	PRO 4 ARG 5 ILE 6 GLU 7 LEU 8 ARG 9 SER 10 ASP 11 ILE 12 THR 13 VAL 14 GLU 15 LEU 16 VAL 17 ASP 18 SER 19 SER 20 ALA 21 SER 22 ASP 23 LEU 24 ALA 25 VAL 26 VAL 27 LYS 28 ALA 29 ALA 30 ARG 31 VAL 32 SER 33 THR 34 TYR 44 ASP 45 GLY 46 GLY 47 SER 48 THR 49 ARG 50 GLY 51 LEU 52 ILE 53 ARG 54 TYR 55 LEU 56 MET 57 ARG 58 SER 59 ARG 60 HIS 61 GLY 62 SER 63 PRO 64 PHE 65 GLU 66 HIS 67 ASN 68 SER 69 MET 70 THR 71 PHE 72 LEU 73 VAL 74 ARG 75 ALA 76 PRO 77 ILE 78 PHE 79 THR 80 VAL 81 ARG 82 HIS 83 LEU 84 MET 85 ARG 86 HIS 87 ARG 88 THR 89 TRP 90 SER 91 PHE 92 ASN 93 GLU 94 GLU 95 SER 96 ALA 97 ARG 98 TYR 99 ARG 100 GLU 101 VAL 102 GLY 103 ALA 104 ALA 105 PHE 106 TYR 107 VAL 108 PRO 109 ASP 110 ALA 111 THR 112 ARG 113 LEU 114 LEU 115 ARG 116 GLN 117 GLU 118 GLY 119 LYS 120 PRO 121 GLY 122 ASP 123 TYR 124 ARG 125 TYR 126 VAL 127 GLY 128 GLY 129 SER 130 THR 131 ASP 132 ASP 133 HIS 134 GLN 135 GLN 136 VAL 137 VAL 138 ARG 139 SER 140 ALA 141 THR 142 ARG 143 ALA 144 TYR 145 GLU 146 VAL 147 ALA 148 PHE 149 GLU 150 GLU 151 TYR 152 GLN 153 ARG 154 LEU 155 LEU 156 ASP 157 SER 158 GLY 159 ILE 160 ALA 161 ARG 162 GLU 163 ILE 164 ALA 165 ARG 166 LEU 167 VAL 168 LEU 169 PRO 170 VAL 171 SER 172 THR 173 TYR 174 SER 175 VAL 176 LEU 177 TYR 178 ALA 179 THR 180 CYS 181 ASN 182 ALA 183 ARG 184 ALA 185 LEU 186 MET 187 HIS 188 PHE 189 LEU 190 SER 191 LEU 192 ARG 193 THR 194 HIS 195 ARG 196 PRO 197 ASP 198 ALA 199 ALA 200 TYR 201 VAL 202 SER 203 HIS 204 PRO 205 GLN 206 ARG 207 GLU 208 ILE 209 GLU 210 MET 211 VAL 212 ALA 213 GLU 214 GLN 215 MET 216 GLU 217 THR 218 ALA 219 TRP 220 ALA 221 LYS 222 LEU 223 MET 224 PRO 225 VAL 226 THR 227 HIS 228 GLU 229 ALA 230 PHE 231 THR 232 ALA 233 PHE 234 GLY 235 ARG 236 VAL 237 SER 238 PRO 239
Unit 3	PRO 4 ARG 5 ILE 6 GLU 7 LEU 8 ARG 9 SER 10 ASP 11 ILE 12 THR 13 VAL 14 GLU 15 LEU 16 VAL 17 ASP 18 SER 19 SER 20 ALA 21 SER 22 ASP 23 LEU 24 ALA 25 VAL 26 VAL 27 LYS 28 ALA 29 ALA 30 ARG 31 VAL 32 SER 33 THR 34 SER 48 THR 49 ARG 50 GLY 51 LEU 52 ILE 53 ARG 54 TYR 55 LEU 56 MET 57 ARG 58 SER 59 ARG 60 HIS 61 GLY 62 SER 63 PRO 64 PHE 65 GLU 66 HIS 67 ASN 68 SER 69 MET 70 THR 71 PHE 72 LEU 73 VAL 74 ARG 75 ALA 76 PRO 77 ILE 78 PHE 79 THR 80 VAL 81 ARG 82 HIS 83 LEU 84 MET 85 ARG 86 HIS 87 ARG 88 THR 89 TRP 90 SER 91 PHE 92 ASN 93 GLU 94 GLU 95 SER 96 ALA 97 ARG 98 TYR 99 ARG 100 GLU 101 VAL 102 GLY 103 ALA 104 ALA 105 PHE 106 TYR 107 VAL 108 PRO 109 ASP 110 ALA 111 THR 112 ARG 113 LEU 114 LEU 115 ARG 116 GLN 117 GLU 118 GLY 119 LYS 120 PRO 121 GLY 122 ASP 123 TYR 124 ARG 125 TYR 126 VAL 127 GLY 128 GLY 129 SER 130 THR 131 ASP 132 ASP 133 HIS 134 GLN 135 GLN 136 VAL 137 VAL 138 ARG 139 SER 140 ALA 141 THR 142 ARG 143 ALA 144 TYR 145 GLU 146 VAL 147 ALA 148 PHE 149 GLU 150 GLU 151 TYR 152 GLN 153 ARG 154 LEU 155 LEU 156 ASP 157 SER 158 GLY 159 ILE 160 ALA 161 ARG 162 GLU 163 ILE 164 ALA 165 ARG 166 LEU 167 VAL 168 LEU 169 PRO 170 VAL 171 SER 172 THR 173 TYR 174 SER 175 VAL 176 LEU 177 TYR 178 ALA 179 THR 180 CYS 181 ASN 182 ALA 183 ARG 184 ALA 185 LEU 186 MET 187 HIS 188 PHE 189 LEU 190 SER 191 LEU 192 ARG 193 THR 194 HIS 195 ARG 196 PRO 197 ASP 198 ALA 199 ALA 200 TYR 201 VAL 202 SER 203 HIS 204 PRO 205 GLN 206 ARG 207 GLU 208 ILE 209 GLU 210 MET 211 VAL 212 ALA 213 GLU 214 GLN 215 MET 216 GLU 217 THR 218 ALA 219 TRP 220 ALA 221 LYS 222 LEU 223 MET 224 PRO 225 VAL 226 THR 227 HIS 228 GLU 229 ALA 230 PHE 231 THR 232 ALA 233 PHE 234 GLY 235 ARG 236 VAL 237 SER 238 PRO 239
Unit 4	ARG 5 ILE 6 GLU 7 LEU 8 ARG 9 SER 10 ASP 11 ILE 12 THR 13 VAL 14 GLU 15 LEU 16 VAL 17 ASP 18 SER 19 SER 20 ALA 21 SER 22 ASP 23 LEU 24 ALA 25 VAL 26 VAL 27 LYS 28 ALA 29 ALA 30 ARG 31 VAL 32 SER 33 THR 34 ASP 45 GLY 46 GLY 47 SER 48 THR 49 ARG 50 GLY 51 LEU 52 ILE 53 ARG 54 TYR 55 LEU 56 MET 57 ARG 58 SER 59 ARG 60 HIS 61 GLY 62 SER 63 PRO 64 PHE 65 GLU 66 HIS 67 ASN 68 SER 69 MET 70 THR 71 PHE 72 LEU 73 VAL 74 ARG 75 ALA 76 PRO 77 ILE 78 PHE 79 THR 80 VAL 81 ARG 82 HIS 83 LEU 84 MET 85 ARG 86 HIS 87 ARG 88 THR 89 TRP 90 SER 91 PHE 92 ASN 93 GLU 94 GLU 95 SER 96 ALA 97 ARG 98 TYR 99 ARG 100 GLU 101 VAL 102 GLY 103 ALA 104 ALA 105 PHE 106 TYR 107 VAL 108 PRO 109 ASP 110 ALA 111 THR 112 ARG 113 LEU 114 LEU 115 ARG 116 GLN 117 GLU 118 GLY 119 LYS 120 PRO 121 GLY 122 ASP 123 TYR 124 ARG 125 TYR 126 VAL 127 GLY 128 GLY 129 SER 130 THR 131 ASP 132 ASP 133 HIS 134 GLN 135 GLN 136 VAL 137 VAL 138 ARG 139 SER 140 ALA 141 THR 142 ARG 143 ALA 144 TYR 145 GLU 146 VAL 147 ALA 148 PHE 149 GLU 150 GLU 151 TYR 152 GLN 153 ARG 154 LEU 155 LEU 156 ASP 157 SER 158 GLY 159 ILE 160 ALA 161 ARG 162 GLU 163 ILE 164 ALA 165 ARG 166 LEU 167 VAL 168 LEU 169 PRO 170 VAL 171 SER 172 THR 173 TYR 174 SER 175 VAL 176 LEU 177 TYR 178 ALA 179 THR 180 CYS 181 ASN 182 ALA 183 ARG 184 ALA 185 LEU 186 MET 187 HIS 188 PHE 189 LEU 190 SER 191 LEU 192 ARG 193 THR 194 HIS 195 ARG 196 PRO 197 ASP 198 ALA 199 ALA 200 TYR 201 VAL 202 SER 203 HIS 204 PRO 205 GLN 206 ARG 207 GLU 208 ILE 209 GLU 210 MET 211 VAL 212 ALA 213 GLU 214 GLN 215 MET 216 GLU 217 THR 218 ALA 219 TRP 220 ALA 221 LYS 222 LEU 223 MET 224 PRO 225 VAL 226 THR 227 HIS 228 GLU 229 ALA 230 PHE 231 THR 232 ALA 233 PHE 234 GLY 235 ARG 236 VAL 237 SER 238 PRO 239

Ligands

Unit 5	FAD 301 5BU 302
Unit 6	5BU 301 FAD 302
Unit 7	FAD 301 5BU 302
Unit 8	5BU 301 FAD 302