Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE P DOMAIN FROM A GI.7 NOROVIRUS VARIANT IN C WITH LEY HBGA.
Keywords P DOMAIN, CAPSID PROTEIN, NOROVIRUS, HBGA, LEY, LEWIS HBGA, PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4P25     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR CAPSID PROTEIN  A 288 2192 0
2  Protein   MAJOR CAPSID PROTEIN  B 288 2199 0
3  Protein   MAJOR CAPSID PROTEIN  C 288 2197 0
4  Protein   MAJOR CAPSID PROTEIN  D 289 2205 0
5  Ligand    E 4 0 46
6  Ligand    F 4 0 46
7  Ligand    G 4 0 46
8  Ligand    H 4 0 46
9 Water     1178 0 1178
total       2347 8793 1362

Proteins
Unit 1 LEU232 THR233 VAL234 PRO235 ASN236 ILE237 PRO238 LEU239 ASN240 ASN241 LEU242 ALA243 ASN244 SER245 ARG246 VAL247 PRO248 ALA249 MET250 ILE251 ASN252 LYS253 MET254 THR255 VAL256 SER257 THR258 ASP259 GLN260 ASN261 GLN262 VAL263 VAL264 GLN265 PHE266 GLN267 ASN268 GLY269 ARG270 CYS271 THR272 LEU273 GLU274 GLY275 GLN276 LEU277 LEU278 GLY279 THR280 THR281 PRO282 VAL283 SER284 ALA285 SER286 GLN287 VAL288 ALA289 ARG290 ILE291 ARG292 GLY293 LYS294 VAL295 PHE296 SER297 THR298 ALA299 SER300 GLY301 LYS302 GLY303 LEU304 ASN305 LEU306 THR307 GLU308 LEU309 ASP310 GLY311 THR312 PRO313 TYR314 HIS315 ALA316 PHE317 GLU318 SER319 PRO320 ALA321 PRO322 LEU323 GLY324 PHE325 PRO326 ASP327 ILE328 GLY329 ALA330 CYS331 ASP332 TRP333 HIS334 VAL335 SER336 THR337 PHE338 LYS339 VAL340 LEU344 SER345 GLY346 ASP347 PRO348 MET349 SER350 ARG351 LEU352 ASP353 VAL354 LYS355 GLN356 ASN357 ALA358 PRO359 PHE360 ALA361 PRO362 HIS363 LEU364 GLY365 SER366 ILE367 GLU368 PHE369 THR370 SER371 ASP372 GLN373 ASP374 PRO375 THR376 GLY377 ASP378 GLN379 LEU380 GLY381 THR382 LEU383 ALA384 TRP385 VAL386 SER387 PRO388 SER389 THR390 SER391 GLY392 ALA393 ARG394 VAL395 ASP396 PRO397 TRP398 LYS399 ILE400 PRO401 SER402 TYR403 GLY404 SER405 THR406 VAL407 THR408 THR411 HIS412 LEU413 ALA414 PRO415 PRO416 ILE417 PHE418 PRO419 PRO420 GLY421 PHE422 GLY423 GLU424 ALA425 ILE426 VAL427 TYR428 PHE429 MET430 SER431 ASP432 PHE433 PRO434 ILE435 VAL436 SER437 GLY438 ALA441 GLN442 VAL443 PRO444 CYS445 THR446 LEU447 PRO448 GLN449 GLU450 PHE451 VAL452 SER453 HIS454 PHE455 VAL456 GLU457 GLN458 GLN459 ALA460 PRO461 VAL462 ARG463 GLY464 GLU465 ALA466 ALA467 LEU468 LEU469 HIS470 TYR471 VAL472 ASP473 PRO474 ASP475 THR476 HIS477 ARG478 ASN479 LEU480 GLY481 GLU482 PHE483 LYS484 LEU485 TYR486 PRO487 ASP488 GLY489 PHE490 ILE491 THR492 CYS493 VAL494 PRO495 ASN496 THR497 GLY498 GLY499 GLY500 PRO501 GLN502 ASN503 LEU504 PRO505 THR506 ASN507 GLY508 VAL509 PHE510 VAL511 PHE512 SER513 SER514 TRP515 VAL516 SER517 ARG518 TYR519 TYR520 GLN521 LEU522 LYS523 PRO524 VAL525 GLY526
Unit 2 ARG230 GLN231 LEU232 THR233 VAL234 PRO235 ASN236 ILE237 PRO238 LEU239 ASN240 ASN241 LEU242 ALA243 ASN244 SER245 ARG246 VAL247 PRO248 ALA249 MET250 ILE251 ASN252 LYS253 MET254 THR255 VAL256 SER257 THR258 ASP259 GLN260 ASN261 GLN262 VAL263 VAL264 GLN265 PHE266 GLN267 ASN268 GLY269 ARG270 CYS271 THR272 LEU273 GLU274 GLY275 GLN276 LEU277 LEU278 GLY279 THR280 THR281 PRO282 VAL283 SER284 ALA285 SER286 GLN287 VAL288 ALA289 ARG290 ILE291 ARG292 GLY293 LYS294 VAL295 PHE296 SER297 THR298 ALA299 SER300 GLY301 LYS302 GLY303 LEU304 ASN305 LEU306 THR307 GLU308 LEU309 ASP310 GLY311 THR312 PRO313 TYR314 HIS315 ALA316 PHE317 GLU318 SER319 PRO320 ALA321 PRO322 LEU323 GLY324 PHE325 PRO326 ASP327 ILE328 GLY329 ALA330 CYS331 ASP332 TRP333 HIS334 VAL335 SER336 THR337 PHE338 LYS339 VAL340 ASP341 GLY346 ASP347 PRO348 MET349 SER350 ARG351 LEU352 ASP353 VAL354 LYS355 GLN356 ASN357 ALA358 PRO359 PHE360 ALA361 PRO362 HIS363 LEU364 GLY365 SER366 ILE367 GLU368 PHE369 THR370 SER371 ASP372 GLN373 ASP374 PRO375 THR376 GLY377 ASP378 GLN379 LEU380 GLY381 THR382 LEU383 ALA384 TRP385 VAL386 SER387 PRO388 SER389 THR390 SER391 GLY392 ALA393 ARG394 VAL395 ASP396 PRO397 TRP398 LYS399 ILE400 PRO401 SER402 TYR403 GLY404 SER410 THR411 HIS412 LEU413 ALA414 PRO415 PRO416 ILE417 PHE418 PRO419 PRO420 GLY421 PHE422 GLY423 GLU424 ALA425 ILE426 VAL427 TYR428 PHE429 MET430 SER431 ASP432 PHE433 PRO434 ILE435 VAL436 SER437 GLY438 ASN439 THR440 ALA441 GLN442 VAL443 PRO444 CYS445 THR446 LEU447 PRO448 GLN449 GLU450 PHE451 VAL452 SER453 HIS454 PHE455 VAL456 GLU457 GLN458 GLN459 ALA460 PRO461 VAL462 ARG463 GLY464 GLU465 ALA466 ALA467 LEU468 LEU469 HIS470 TYR471 VAL472 ASP473 PRO474 ASP475 THR476 HIS477 ARG478 ASN479 LEU480 GLY481 GLU482 PHE483 LYS484 LEU485 TYR486 PRO487 ASP488 GLY489 PHE490 ILE491 THR492 CYS493 VAL494 PRO495 ASN496 THR497 GLY498 GLY499 GLY500 PRO501 GLN502 ASN503 LEU504 PRO505 THR506 ASN507 GLY508 VAL509 PHE510 VAL511 PHE512 SER513 SER514 TRP515 VAL516 SER517 ARG518 TYR519 TYR520 GLN521 LEU522 LYS523 PRO524 VAL525 GLY526
Unit 3 LEU232 THR233 VAL234 PRO235 ASN236 ILE237 PRO238 LEU239 ASN240 ASN241 LEU242 ALA243 ASN244 SER245 ARG246 VAL247 PRO248 ALA249 MET250 ILE251 ASN252 LYS253 MET254 THR255 VAL256 SER257 THR258 ASP259 GLN260 ASN261 GLN262 VAL263 VAL264 GLN265 PHE266 GLN267 ASN268 GLY269 ARG270 CYS271 THR272 LEU273 GLU274 GLY275 GLN276 LEU277 LEU278 GLY279 THR280 THR281 PRO282 VAL283 SER284 ALA285 SER286 GLN287 VAL288 ALA289 ARG290 ILE291 ARG292 GLY293 LYS294 VAL295 PHE296 SER297 THR298 ALA299 SER300 GLY301 LYS302 GLY303 LEU304 ASN305 LEU306 THR307 GLU308 LEU309 ASP310 GLY311 THR312 PRO313 TYR314 HIS315 ALA316 PHE317 GLU318 SER319 PRO320 ALA321 PRO322 LEU323 GLY324 PHE325 PRO326 ASP327 ILE328 GLY329 ALA330 CYS331 ASP332 TRP333 HIS334 VAL335 SER336 THR337 PHE338 LYS339 VAL340 ASP341 LEU344 SER345 GLY346 ASP347 PRO348 MET349 SER350 ARG351 LEU352 ASP353 VAL354 LYS355 GLN356 ASN357 ALA358 PRO359 PHE360 ALA361 PRO362 HIS363 LEU364 GLY365 SER366 ILE367 GLU368 PHE369 THR370 SER371 ASP372 GLN373 ASP374 PRO375 THR376 GLY377 ASP378 GLN379 LEU380 GLY381 THR382 LEU383 ALA384 TRP385 VAL386 SER387 PRO388 SER389 THR390 SER391 GLY392 ALA393 ARG394 VAL395 ASP396 PRO397 TRP398 LYS399 ILE400 PRO401 SER402 TYR403 GLY404 SER405 THR406 VAL407 THR408 GLU409 SER410 THR411 HIS412 LEU413 ALA414 PRO415 PRO416 ILE417 PHE418 PRO419 PRO420 GLY421 PHE422 GLY423 GLU424 ALA425 ILE426 VAL427 TYR428 PHE429 MET430 SER431 ASP432 PHE433 PRO434 ILE435 VAL436 GLN442 VAL443 PRO444 CYS445 THR446 LEU447 PRO448 GLN449 GLU450 PHE451 VAL452 SER453 HIS454 PHE455 VAL456 GLU457 GLN458 GLN459 ALA460 PRO461 VAL462 ARG463 GLY464 GLU465 ALA466 ALA467 LEU468 LEU469 HIS470 TYR471 VAL472 ASP473 PRO474 ASP475 THR476 HIS477 ARG478 ASN479 LEU480 GLY481 GLU482 PHE483 LYS484 LEU485 TYR486 PRO487 ASP488 GLY489 PHE490 ILE491 THR492 CYS493 VAL494 PRO495 ASN496 THR497 GLY498 GLY499 GLY500 PRO501 GLN502 ASN503 LEU504 PRO505 THR506 ASN507 GLY508 VAL509 PHE510 VAL511 PHE512 SER513 SER514 TRP515 VAL516 SER517 ARG518 TYR519 TYR520 GLN521 LEU522 LYS523 PRO524 VAL525 GLY526
Unit 4 ALA225 GLU226 GLN227 LYS228 THR229 ARG230 GLN231 LEU232 THR233 VAL234 PRO235 ASN236 ILE237 PRO238 LEU239 ASN240 ASN241 LEU242 ALA243 ASN244 SER245 ARG246 VAL247 PRO248 ALA249 MET250 ILE251 ASN252 LYS253 MET254 THR255 VAL256 SER257 THR258 ASP259 GLN260 ASN261 GLN262 VAL263 VAL264 GLN265 PHE266 GLN267 ASN268 GLY269 ARG270 CYS271 THR272 LEU273 GLU274 GLY275 GLN276 LEU277 LEU278 GLY279 THR280 THR281 PRO282 VAL283 SER284 ALA285 SER286 GLN287 VAL288 ALA289 ARG290 ILE291 ARG292 GLY293 LYS294 VAL295 PHE296 SER297 THR298 ALA299 SER300 GLY301 LYS302 GLY303 LEU304 ASN305 LEU306 THR307 GLU308 LEU309 ASP310 GLY311 THR312 PRO313 TYR314 HIS315 ALA316 GLU318 SER319 PRO320 ALA321 PRO322 LEU323 GLY324 PHE325 PRO326 ASP327 ILE328 GLY329 ALA330 CYS331 ASP332 TRP333 HIS334 VAL335 SER336 THR337 PHE338 LYS339 VAL340 SER345 GLY346 ASP347 PRO348 MET349 SER350 ARG351 LEU352 ASP353 VAL354 LYS355 GLN356 ASN357 ALA358 PRO359 PHE360 ALA361 PRO362 HIS363 LEU364 GLY365 SER366 ILE367 GLU368 PHE369 THR370 SER371 ASP372 GLN373 ASP374 PRO375 THR376 GLY377 ASP378 GLN379 LEU380 GLY381 THR382 LEU383 ALA384 TRP385 VAL386 SER387 PRO388 SER389 THR390 SER391 GLY392 ALA393 ARG394 VAL395 ASP396 PRO397 TRP398 LYS399 ILE400 PRO401 SER402 TYR403 GLY404 THR411 HIS412 LEU413 ALA414 PRO415 PRO416 ILE417 PHE418 PRO419 PRO420 PHE422 GLY423 GLU424 ALA425 ILE426 VAL427 TYR428 PHE429 MET430 SER431 ASP432 PHE433 PRO434 ILE435 VAL436 SER437 ASN439 THR440 ALA441 GLN442 VAL443 PRO444 CYS445 THR446 LEU447 PRO448 GLN449 GLU450 PHE451 VAL452 SER453 HIS454 PHE455 VAL456 GLU457 GLN458 GLN459 ALA460 PRO461 VAL462 ARG463 GLY464 GLU465 ALA466 ALA467 LEU468 LEU469 HIS470 TYR471 VAL472 ASP473 PRO474 ASP475 THR476 HIS477 ARG478 ASN479 LEU480 GLY481 GLU482 PHE483 LYS484 LEU485 TYR486 PRO487 ASP488 GLY489 PHE490 ILE491 THR492 CYS493 VAL494 PRO495 ASN496 THR497 GLY498 GLY499 GLY500 PRO501 GLN502 ASN503 LEU504 PRO505 THR506 ASN507 GLY508 VAL509 PHE510 VAL511 PHE512 SER513 SER514 TRP515 VAL516 SER517 ARG518 TYR519 TYR520 GLN521 LEU522 LYS523 PRO524 VAL525 GLY526

Ligands
Unit 5 NAG1 GAL2 FUC3 FUC4
Unit 6 NAG1 GAL2 FUC3 FUC4
Unit 7 NAG1 GAL2 FUC3 FUC4
Unit 8 NAG1 GAL2 FUC3 FUC4

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany