4OXD - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE LDCB LD-CARBOXYPEPTIDASE REVEALS THE MOLECU OF PEPTIDOGLYCAN RECOGNITION
• Keywords: LAS FAMILY, LD-CARBOXYPEPTIDASE, CELL WALL MODIFYING ENZYME, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4OXD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LDCB LD-CARBOXYPEPTIDASE	A	185	1481	0
2	Protein	LDCB LD-CARBOXYPEPTIDASE	B	181	1450	0
3	Protein	LDCB LD-CARBOXYPEPTIDASE	C	167	1337	0
4	Protein	LDCB LD-CARBOXYPEPTIDASE	D	171	1372	0
5	Protein	LDCB LD-CARBOXYPEPTIDASE	E	171	1374	0
6	Protein	MUB-ALA-ZGL-LYS-DSG	H	5	15	36
7	Ligand	LDCB LD-CARBOXYPEPTIDASE	A	4	0	4
8	Protein	LDCB LD-CARBOXYPEPTIDASE	B	7	0	16
9	Ligand	LDCB LD-CARBOXYPEPTIDASE	C	5	0	5
10	Ligand	LDCB LD-CARBOXYPEPTIDASE	D	3	0	3
11	Ligand	LDCB LD-CARBOXYPEPTIDASE	E	3	0	3
12	Water			111	0	111
total				1013	7029	178

Proteins

Unit 1	SER -3 HIS -2 MET -1 GLU 56 VAL 57 VAL 58 ASN 59 LYS 60 GLY 61 ASP 62 TYR 63 TYR 64 SER 65 ILE 66 GLN 67 GLY 68 LYS 69 TYR 70 ASP 71 GLU 72 ILE 73 ILE 74 VAL 75 ALA 76 ASN 77 LYS 78 HIS 79 TYR 80 PRO 81 LEU 82 SER 83 LYS 84 ASP 85 TYR 86 ASN 87 PRO 88 GLY 89 GLU 90 ASN 91 PRO 92 THR 93 ALA 94 LYS 95 ALA 96 GLU 97 LEU 98 VAL 99 LYS 100 LEU 101 ILE 102 LYS 103 ALA 104 MET 105 GLN 106 GLU 107 ALA 108 GLY 109 PHE 110 PRO 111 ILE 112 SER 113 ASP 114 HIS 115 TYR 116 SER 117 GLY 118 PHE 119 ARG 120 SER 121 TYR 122 GLU 123 THR 124 GLN 125 THR 126 LYS 127 LEU 128 TYR 129 GLN 130 ASP 131 TYR 132 VAL 133 ASN 134 GLN 135 ASP 136 GLY 137 LYS 138 GLU 139 ALA 140 ALA 141 ASP 142 ARG 143 TYR 144 SER 145 ALA 146 ARG 147 PRO 148 GLY 149 TYR 150 SER 151 GLU 152 HIS 153 GLN 154 THR 155 GLY 156 LEU 157 ALA 158 PHE 159 ASP 160 VAL 161 ILE 162 GLY 163 THR 164 ASP 165 GLY 166 ASP 167 LEU 168 VAL 169 THR 170 GLU 171 GLU 172 LYS 173 ALA 174 ALA 175 GLN 176 TRP 177 LEU 178 LEU 179 ASP 180 HIS 181 ALA 182 ALA 183 ASP 184 TYR 185 GLY 186 PHE 187 VAL 188 VAL 189 ARG 190 TYR 191 LEU 192 LYS 193 GLY 194 LYS 195 GLU 196 LYS 197 GLU 198 THR 199 GLY 200 TYR 201 MET 202 ALA 203 GLU 204 GLU 205 TRP 206 HIS 207 LEU 208 ARG 209 TYR 210 VAL 211 GLY 212 LYS 213 GLU 214 ALA 215 LYS 216 GLU 217 ILE 218 ALA 219 GLU 220 SER 221 GLY 222 LEU 223 SER 224 LEU 225 GLU 226 GLU 227 TYR 228 TYR 229 GLY 230 PHE 231 GLU 232 GLY 233 GLY 234 ASP 235 TYR 236 VAL 237
Unit 2	SER -3 HIS -2 MET -1 GLU 56 VAL 57 VAL 58 ASN 59 LYS 60 GLY 61 ASP 62 TYR 63 TYR 64 SER 65 ILE 66 GLN 67 GLY 68 LYS 69 TYR 70 ASP 71 GLU 72 ILE 73 ILE 74 VAL 75 ALA 76 ASN 77 LYS 78 HIS 79 TYR 80 PRO 81 LEU 82 SER 83 LYS 84 ASP 85 TYR 86 ASN 87 PRO 88 GLY 89 GLU 90 ASN 91 PRO 92 THR 93 ALA 94 LYS 95 ALA 96 GLU 97 LEU 98 VAL 99 LYS 100 LEU 101 ILE 102 LYS 103 ALA 104 MET 105 GLN 106 GLU 107 ALA 108 GLY 109 PHE 110 PRO 111 ILE 112 SER 113 ASP 114 HIS 115 TYR 116 SER 117 GLY 118 PHE 119 ARG 120 SER 121 TYR 122 GLU 123 THR 124 GLN 125 THR 126 LYS 127 LEU 128 TYR 129 GLN 130 ASP 131 TYR 132 VAL 133 ASN 134 GLN 135 ASP 136 GLY 137 LYS 138 GLU 139 ALA 140 ALA 141 ASP 142 ARG 143 TYR 144 SER 145 ALA 146 ARG 147 PRO 148 GLY 149 TYR 150 SER 151 GLU 152 HIS 153 GLN 154 THR 155 GLY 156 LEU 157 ALA 158 PHE 159 ASP 160 VAL 161 ILE 162 GLY 163 THR 164 ASP 165 ASP 167 LEU 168 VAL 169 THR 170 GLU 171 GLU 172 LYS 173 ALA 174 ALA 175 GLN 176 TRP 177 LEU 178 LEU 179 ASP 180 HIS 181 ALA 182 ALA 183 ASP 184 TYR 185 GLY 186 PHE 187 VAL 188 VAL 189 ARG 190 TYR 191 LEU 192 LYS 193 GLY 194 GLU 198 THR 199 GLY 200 TYR 201 MET 202 ALA 203 GLU 204 GLU 205 TRP 206 HIS 207 LEU 208 ARG 209 TYR 210 VAL 211 GLY 212 LYS 213 GLU 214 ALA 215 LYS 216 GLU 217 ILE 218 ALA 219 GLU 220 SER 221 GLY 222 LEU 223 SER 224 LEU 225 GLU 226 GLU 227 TYR 228 TYR 229 GLY 230 PHE 231 GLU 232 GLY 233 GLY 234 ASP 235 TYR 236 VAL 237
Unit 3	GLU 56 VAL 57 VAL 58 ASN 59 LYS 60 GLY 61 ASP 62 TYR 63 TYR 64 SER 65 ILE 66 GLN 67 GLY 68 LYS 69 TYR 70 ASP 71 GLU 72 ILE 73 ILE 74 VAL 75 ALA 76 ASN 77 LYS 78 HIS 79 TYR 80 PRO 81 LEU 82 SER 83 LYS 84 ASP 85 TYR 86 ASN 87 PRO 88 GLY 89 GLU 90 ASN 91 PRO 92 THR 93 ALA 94 LYS 95 ALA 96 GLU 97 LEU 98 VAL 99 LYS 100 LEU 101 ILE 102 LYS 103 ALA 104 MET 105 GLN 106 GLU 107 ALA 108 GLY 109 PHE 110 PRO 111 ILE 112 SER 113 ASP 114 HIS 115 TYR 116 SER 117 GLY 118 PHE 119 ARG 120 SER 121 TYR 122 GLU 123 THR 124 GLN 125 THR 126 LYS 127 LEU 128 TYR 129 SER 145 ALA 146 ARG 147 PRO 148 GLY 149 TYR 150 SER 151 GLU 152 HIS 153 GLN 154 THR 155 GLY 156 LEU 157 ALA 158 PHE 159 ASP 160 VAL 161 ILE 162 GLY 163 THR 164 ASP 165 GLY 166 ASP 167 LEU 168 VAL 169 THR 170 GLU 171 GLU 172 LYS 173 ALA 174 ALA 175 GLN 176 TRP 177 LEU 178 LEU 179 ASP 180 HIS 181 ALA 182 ALA 183 ASP 184 TYR 185 GLY 186 PHE 187 VAL 188 VAL 189 ARG 190 TYR 191 LEU 192 LYS 193 GLY 194 LYS 195 GLU 196 LYS 197 GLU 198 THR 199 GLY 200 TYR 201 MET 202 ALA 203 GLU 204 GLU 205 TRP 206 HIS 207 LEU 208 ARG 209 TYR 210 VAL 211 GLY 212 LYS 213 GLU 214 ALA 215 LYS 216 GLU 217 ILE 218 ALA 219 GLU 220 SER 221 GLY 222 LEU 223 SER 224 LEU 225 GLU 226 GLU 227 TYR 228 TYR 229 GLY 230 PHE 231 GLU 232 GLY 233 GLY 234 ASP 235 TYR 236 VAL 237
Unit 4	HIS -2 MET -1 GLU 56 VAL 57 VAL 58 ASN 59 LYS 60 GLY 61 ASP 62 TYR 63 TYR 64 SER 65 ILE 66 GLN 67 GLY 68 LYS 69 TYR 70 ASP 71 GLU 72 ILE 73 ILE 74 VAL 75 ALA 76 ASN 77 LYS 78 HIS 79 TYR 80 PRO 81 LEU 82 SER 83 LYS 84 ASP 85 TYR 86 ASN 87 PRO 88 GLY 89 GLU 90 ASN 91 PRO 92 THR 93 ALA 94 LYS 95 ALA 96 GLU 97 LEU 98 VAL 99 LYS 100 LEU 101 ILE 102 LYS 103 ALA 104 MET 105 GLN 106 GLU 107 ALA 108 GLY 109 PHE 110 PRO 111 ILE 112 SER 113 ASP 114 HIS 115 TYR 116 SER 117 GLY 118 PHE 119 ARG 120 SER 121 TYR 122 GLU 123 THR 124 GLN 125 THR 126 LYS 127 LEU 128 TYR 129 GLN 130 ASP 131 SER 145 ALA 146 ARG 147 PRO 148 GLY 149 TYR 150 SER 151 GLU 152 HIS 153 GLN 154 THR 155 GLY 156 LEU 157 ALA 158 PHE 159 ASP 160 VAL 161 ILE 162 GLY 163 THR 164 ASP 165 GLY 166 ASP 167 LEU 168 VAL 169 THR 170 GLU 171 GLU 172 LYS 173 ALA 174 ALA 175 GLN 176 TRP 177 LEU 178 LEU 179 ASP 180 HIS 181 ALA 182 ALA 183 ASP 184 TYR 185 GLY 186 PHE 187 VAL 188 VAL 189 ARG 190 TYR 191 LEU 192 LYS 193 GLY 194 LYS 195 GLU 196 LYS 197 GLU 198 THR 199 GLY 200 TYR 201 MET 202 ALA 203 GLU 204 GLU 205 TRP 206 HIS 207 LEU 208 ARG 209 TYR 210 VAL 211 GLY 212 LYS 213 GLU 214 ALA 215 LYS 216 GLU 217 ILE 218 ALA 219 GLU 220 SER 221 GLY 222 LEU 223 SER 224 LEU 225 GLU 226 GLU 227 TYR 228 TYR 229 GLY 230 PHE 231 GLU 232 GLY 233 GLY 234 ASP 235 TYR 236 VAL 237
Unit 5	HIS -2 MET -1 GLU 56 VAL 57 VAL 58 ASN 59 LYS 60 GLY 61 ASP 62 TYR 63 TYR 64 SER 65 ILE 66 GLN 67 GLY 68 LYS 69 TYR 70 ASP 71 GLU 72 ILE 73 ILE 74 VAL 75 ALA 76 ASN 77 LYS 78 HIS 79 TYR 80 PRO 81 LEU 82 SER 83 LYS 84 ASP 85 TYR 86 ASN 87 PRO 88 GLY 89 GLU 90 ASN 91 PRO 92 THR 93 ALA 94 LYS 95 ALA 96 GLU 97 LEU 98 VAL 99 LYS 100 LEU 101 ILE 102 LYS 103 ALA 104 MET 105 GLN 106 GLU 107 ALA 108 GLY 109 PHE 110 PRO 111 ILE 112 SER 113 ASP 114 HIS 115 TYR 116 SER 117 GLY 118 PHE 119 ARG 120 SER 121 TYR 122 GLU 123 THR 124 GLN 125 THR 126 LYS 127 LEU 128 TYR 129 GLN 130 ASP 131 ALA 140 ALA 141 ASP 142 ARG 143 TYR 144 SER 145 ALA 146 ARG 147 PRO 148 GLY 149 TYR 150 SER 151 GLU 152 HIS 153 GLN 154 THR 155 GLY 156 LEU 157 ALA 158 PHE 159 ASP 160 VAL 161 ILE 162 GLY 163 THR 164 ASP 165 GLY 166 GLU 172 LYS 173 ALA 174 ALA 175 GLN 176 TRP 177 LEU 178 LEU 179 ASP 180 HIS 181 ALA 182 ALA 183 ASP 184 TYR 185 GLY 186 PHE 187 VAL 188 VAL 189 ARG 190 TYR 191 LEU 192 LYS 193 GLY 194 LYS 195 GLU 196 LYS 197 GLU 198 THR 199 GLY 200 TYR 201 MET 202 ALA 203 GLU 204 GLU 205 TRP 206 HIS 207 LEU 208 ARG 209 TYR 210 VAL 211 GLY 212 LYS 213 GLU 214 ALA 215 LYS 216 GLU 217 ILE 218 ALA 219 GLU 220 SER 221 GLY 222 LEU 223 SER 224 LEU 225 GLU 226 GLU 227 TYR 228 TYR 229 GLY 230 PHE 231 GLU 232 GLY 233 GLY 234 ASP 235 TYR 236 VAL 237
Unit 6	MUB 1 ALA 2 ZGL 3 LYS 4 DSG 5
Unit 8	ZN 301 ZN 302 ZN 303 ZN 304 ZN 305 ZN 306 LYS 307

Ligands

Unit 7	ZN 301 ZN 302 ZN 303 MG 304
Unit 9	ZN 301 ZN 302 ZN 303 ZN 304 CL 305
Unit 10	ZN 301 ZN 302 CL 303
Unit 11	ZN 301 ZN 302 ZN 303