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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY CRYSTAL STRUCTURE OF SERINE HYDROXYMETHYL TRANSFERASE BURKHOLDERIA CENOCEPACIA BOUND TO PLP AND SERINE
Keywords STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AN INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, SERINE HYDROXYMETHYL TRANSFERAS TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4OT8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SERINE HYDROXYMETHYLTRANSFERASE  A 414 3086 0
2  Protein   SERINE HYDROXYMETHYLTRANSFERASE  B 411 3063 0
3  Protein   SERINE HYDROXYMETHYLTRANSFERASE  C 415 3096 0
4  Protein   SERINE HYDROXYMETHYLTRANSFERASE  D 408 3045 0
5  Protein   SERINE HYDROXYMETHYLTRANSFERASE  A 3 0 29
6  Protein   SERINE HYDROXYMETHYLTRANSFERASE  B 2 0 22
7  Ligand   SERINE HYDROXYMETHYLTRANSFERASE  C 1 0 15
8  Protein   SERINE HYDROXYMETHYLTRANSFERASE  B 1 0 7
9  Ligand   SERINE HYDROXYMETHYLTRANSFERASE  D 1 0 15
10 Water     893 0 893
total       2549 12290 981

Proteins
Unit 1 PHE2 ASP3 ARG4 ALA5 GLN6 SER7 THR8 ILE9 ALA10 ASN11 VAL12 ASP13 PRO14 GLU15 ILE16 PHE17 ALA18 ALA19 ILE20 GLU21 GLN22 GLU23 ASN24 ARG25 ARG26 GLN27 GLU28 ASP29 HIS30 ILE31 GLU32 LEU33 ILE34 ALA35 SER36 GLU37 ASN38 TYR39 THR40 SER41 PRO42 ALA43 VAL44 MET45 ALA46 ALA47 GLN48 GLY49 SER50 GLN51 LEU52 THR53 ASN54 LYS55 TYR56 ALA57 GLU58 GLY59 TYR60 PRO61 GLY62 LYS63 ARG64 TYR65 TYR66 GLY67 GLY68 CYS69 GLU70 TYR71 VAL72 ASP73 VAL74 VAL75 GLU76 GLN77 LEU78 ALA79 ILE80 ASP81 ARG82 VAL83 LYS84 GLN85 LEU86 PHE87 GLY88 ALA89 GLU90 ALA91 ALA92 ASN93 VAL94 GLN95 PRO96 ASN97 SER98 GLY99 SER100 GLN101 ALA102 ASN103 GLN104 GLY105 VAL106 PHE107 PHE108 ALA109 MET110 LEU111 LYS112 PRO113 GLY114 ASP115 THR116 ILE117 MET118 GLY119 MET120 SER121 LEU122 ALA123 HIS124 GLY125 GLY126 HIS127 LEU128 THR129 HIS130 GLY131 SER132 PRO133 VAL134 ASN135 MET136 SER137 GLY138 LYS139 TRP140 PHE141 ASN142 VAL143 VAL144 SER145 TYR146 GLY147 LEU148 ASN149 GLU150 ASN151 GLU152 ASP153 ILE154 ASP155 TYR156 ASP157 ALA158 ALA159 GLU160 LYS161 LEU162 ALA163 ASN164 GLU165 HIS166 LYS167 PRO168 LYS169 LEU170 ILE171 VAL172 ALA173 GLY174 ALA175 SER176 ALA177 PHE178 ALA179 LEU180 LYS181 ILE182 ASP183 PHE184 GLU185 ARG186 LEU187 ALA188 LYS189 ILE190 ALA191 LYS192 SER193 VAL194 GLY195 ALA196 TYR197 LEU198 MET199 VAL200 ASP201 MET202 ALA203 HIS204 TYR205 ALA206 GLY207 LEU208 ILE209 ALA210 ALA211 GLY212 VAL213 TYR214 PRO215 ASN216 PRO217 VAL218 PRO219 HIS220 ALA221 ASP222 PHE223 VAL224 THR225 THR226 THR227 THR228 HIS229 LYS230 SER231 LEU232 ARG233 GLY234 PRO235 ARG236 GLY237 GLY238 VAL239 ILE240 LEU241 MET242 LYS243 ALA244 GLU245 TYR246 GLU247 LYS248 PRO249 ILE250 ASN251 SER252 ALA253 ILE254 PHE255 PRO256 GLY257 ILE258 GLN259 GLY260 GLY261 PRO262 LEU263 MET264 HIS265 VAL266 ILE267 ALA268 ALA269 LYS270 ALA271 VAL272 ALA273 PHE274 LYS275 GLU276 ALA277 LEU278 SER279 PRO280 GLU281 PHE282 LYS283 GLU284 TYR285 GLN286 GLN287 LYS288 VAL289 VAL290 GLU291 ASN292 ALA293 ARG294 VAL295 LEU296 ALA297 GLU298 THR299 LEU300 VAL301 LYS302 ARG303 GLY304 LEU305 ARG306 ILE307 VAL308 SER309 GLY310 ARG311 THR312 GLU313 SER314 HIS315 VAL316 MET317 LEU318 VAL319 ASP320 LEU321 ARG322 ALA323 LYS324 HIS325 ILE326 THR327 GLY328 LYS329 ALA330 ALA331 GLU332 ALA333 ALA334 LEU335 GLY336 ALA337 ALA338 HIS339 ILE340 THR341 VAL342 ASN343 LYS344 ASN345 ALA346 ILE347 PRO348 ASN349 ASP350 PRO351 GLU352 LYS353 PRO354 PHE355 VAL356 THR357 SER358 GLY359 ILE360 ARG361 LEU362 GLY363 SER364 PRO365 ALA366 MET367 THR368 THR369 ARG370 GLY371 PHE372 GLY373 PRO374 ALA375 GLU376 ALA377 GLU378 GLN379 VAL380 GLY381 ASN382 LEU383 ILE384 ALA385 ASP386 VAL387 LEU388 GLU389 ASN390 PRO391 GLU392 ASP393 ALA394 ALA395 THR396 ILE397 GLU398 ARG399 VAL400 ARG401 ALA402 GLN403 VAL404 ALA405 GLU406 LEU407 THR408 LYS409 ARG410 PHE411 PRO412 VAL413 TYR414 ARG415
Unit 2 ALA5 GLN6 SER7 THR8 ILE9 ALA10 ASN11 VAL12 ASP13 PRO14 GLU15 ILE16 PHE17 ALA18 ALA19 ILE20 GLU21 GLN22 GLU23 ASN24 ARG25 ARG26 GLN27 GLU28 ASP29 HIS30 ILE31 GLU32 LEU33 ILE34 ALA35 SER36 GLU37 ASN38 TYR39 THR40 SER41 PRO42 ALA43 VAL44 MET45 ALA46 ALA47 GLN48 GLY49 SER50 GLN51 LEU52 THR53 ASN54 LYS55 TYR56 ALA57 GLU58 GLY59 TYR60 PRO61 GLY62 LYS63 ARG64 TYR65 TYR66 GLY67 GLY68 CYS69 GLU70 TYR71 VAL72 ASP73 VAL74 VAL75 GLU76 GLN77 LEU78 ALA79 ILE80 ASP81 ARG82 VAL83 LYS84 GLN85 LEU86 PHE87 GLY88 ALA89 GLU90 ALA91 ALA92 ASN93 VAL94 GLN95 PRO96 ASN97 SER98 GLY99 SER100 GLN101 ALA102 ASN103 GLN104 GLY105 VAL106 PHE107 PHE108 ALA109 MET110 LEU111 LYS112 PRO113 GLY114 ASP115 THR116 ILE117 MET118 GLY119 MET120 SER121 LEU122 ALA123 HIS124 GLY125 GLY126 HIS127 LEU128 THR129 HIS130 GLY131 SER132 PRO133 VAL134 ASN135 MET136 SER137 GLY138 LYS139 TRP140 PHE141 ASN142 VAL143 VAL144 SER145 TYR146 GLY147 LEU148 ASN149 GLU150 ASN151 GLU152 ASP153 ILE154 ASP155 TYR156 ASP157 ALA158 ALA159 GLU160 LYS161 LEU162 ALA163 ASN164 GLU165 HIS166 LYS167 PRO168 LYS169 LEU170 ILE171 VAL172 ALA173 GLY174 ALA175 SER176 ALA177 PHE178 ALA179 LEU180 LYS181 ILE182 ASP183 PHE184 GLU185 ARG186 LEU187 ALA188 LYS189 ILE190 ALA191 LYS192 SER193 VAL194 GLY195 ALA196 TYR197 LEU198 MET199 VAL200 ASP201 MET202 ALA203 HIS204 TYR205 ALA206 GLY207 LEU208 ILE209 ALA210 ALA211 GLY212 VAL213 TYR214 PRO215 ASN216 PRO217 VAL218 PRO219 HIS220 ALA221 ASP222 PHE223 VAL224 THR225 THR226 THR227 THR228 HIS229 LYS230 SER231 LEU232 ARG233 GLY234 PRO235 ARG236 GLY237 GLY238 VAL239 ILE240 LEU241 MET242 LYS243 ALA244 GLU245 TYR246 GLU247 LYS248 PRO249 ILE250 ASN251 SER252 ALA253 ILE254 PHE255 PRO256 GLY257 ILE258 GLN259 GLY260 GLY261 PRO262 LEU263 MET264 HIS265 VAL266 ILE267 ALA268 ALA269 LYS270 ALA271 VAL272 ALA273 PHE274 LYS275 GLU276 ALA277 LEU278 SER279 PRO280 GLU281 PHE282 LYS283 GLU284 TYR285 GLN286 GLN287 LYS288 VAL289 VAL290 GLU291 ASN292 ALA293 ARG294 VAL295 LEU296 ALA297 GLU298 THR299 LEU300 VAL301 LYS302 ARG303 GLY304 LEU305 ARG306 ILE307 VAL308 SER309 GLY310 ARG311 THR312 GLU313 SER314 HIS315 VAL316 MET317 LEU318 VAL319 ASP320 LEU321 ARG322 ALA323 LYS324 HIS325 ILE326 THR327 GLY328 LYS329 ALA330 ALA331 GLU332 ALA333 ALA334 LEU335 GLY336 ALA337 ALA338 HIS339 ILE340 THR341 VAL342 ASN343 LYS344 ASN345 ALA346 ILE347 PRO348 ASN349 ASP350 PRO351 GLU352 LYS353 PRO354 PHE355 VAL356 THR357 SER358 GLY359 ILE360 ARG361 LEU362 GLY363 SER364 PRO365 ALA366 MET367 THR368 THR369 ARG370 GLY371 PHE372 GLY373 PRO374 ALA375 GLU376 ALA377 GLU378 GLN379 VAL380 GLY381 ASN382 LEU383 ILE384 ALA385 ASP386 VAL387 LEU388 GLU389 ASN390 PRO391 GLU392 ASP393 ALA394 ALA395 THR396 ILE397 GLU398 ARG399 VAL400 ARG401 ALA402 GLN403 VAL404 ALA405 GLU406 LEU407 THR408 LYS409 ARG410 PHE411 PRO412 VAL413 TYR414 ARG415
Unit 3 HIS0 MET1 PHE2 ASP3 ARG4 ALA5 GLN6 SER7 THR8 ILE9 ALA10 ASN11 VAL12 ASP13 PRO14 GLU15 ILE16 PHE17 ALA18 ALA19 ILE20 GLU21 GLN22 GLU23 ASN24 ARG25 ARG26 GLN27 GLU28 ASP29 HIS30 ILE31 GLU32 LEU33 ILE34 ALA35 SER36 GLU37 ASN38 TYR39 THR40 SER41 PRO42 ALA43 VAL44 MET45 ALA46 ALA47 GLN48 GLY49 SER50 GLN51 LEU52 THR53 ASN54 LYS55 TYR56 ALA57 GLU58 GLY59 TYR60 PRO61 GLY62 LYS63 ARG64 TYR65 TYR66 GLY67 GLY68 CYS69 GLU70 TYR71 VAL72 ASP73 VAL74 VAL75 GLU76 GLN77 LEU78 ALA79 ILE80 ASP81 ARG82 VAL83 LYS84 GLN85 LEU86 PHE87 GLY88 ALA89 GLU90 ALA91 ALA92 ASN93 VAL94 GLN95 PRO96 ASN97 SER98 GLY99 SER100 GLN101 ALA102 ASN103 GLN104 GLY105 VAL106 PHE107 PHE108 ALA109 MET110 LEU111 LYS112 PRO113 GLY114 ASP115 THR116 ILE117 MET118 GLY119 MET120 SER121 LEU122 ALA123 HIS124 GLY125 GLY126 HIS127 LEU128 THR129 HIS130 GLY131 SER132 PRO133 VAL134 ASN135 MET136 SER137 GLY138 LYS139 TRP140 PHE141 ASN142 VAL143 VAL144 SER145 TYR146 GLY147 LEU148 ASN149 GLU150 ASN151 GLU152 ASP153 ILE154 ASP155 TYR156 ASP157 ALA158 ALA159 GLU160 LYS161 LEU162 ALA163 ASN164 GLU165 HIS166 LYS167 PRO168 LYS169 LEU170 ILE171 VAL172 ALA173 GLY174 ALA175 SER176 ALA177 PHE178 ALA179 LEU180 LYS181 ILE182 ASP183 PHE184 GLU185 ARG186 LEU187 ALA188 LYS189 ILE190 ALA191 LYS192 SER193 VAL194 GLY195 ALA196 TYR197 LEU198 MET199 VAL200 ASP201 MET202 ALA203 HIS204 TYR205 ALA206 GLY207 LEU208 ILE209 ALA210 ALA211 GLY212 VAL213 TYR214 PRO215 ASN216 PRO217 VAL218 PRO219 HIS220 ALA221 ASP222 PHE223 VAL224 THR225 THR226 THR227 THR228 HIS229 LYS230 SER231 LEU232 ARG233 GLY234 PRO235 ARG236 GLY237 GLY238 VAL239 ILE240 LEU241 MET242 LYS243 ALA244 GLU245 TYR246 GLU247 LYS248 PRO249 ILE250 ASN251 SER252 ALA253 ILE254 PHE255 PRO256 GLY257 ILE258 GLN259 GLY260 GLY261 PRO262 LEU263 MET264 HIS265 VAL266 ILE267 ALA268 ALA269 LYS270 ALA271 VAL272 ALA273 PHE274 LYS275 GLU276 ALA277 LEU278 SER279 PRO280 GLU281 PHE282 LYS283 GLU284 TYR285 GLN286 GLN287 LYS288 VAL289 VAL290 GLU291 ASN292 ALA293 ARG294 VAL295 LEU296 ALA297 GLU298 THR299 LEU300 VAL301 LYS302 ARG303 GLY304 LEU305 ARG306 ILE307 VAL308 SER309 GLY310 ARG311 THR312 GLU313 SER314 HIS315 VAL316 MET317 LEU318 VAL319 ASP320 LEU321 ARG322 ALA323 LYS324 HIS325 ILE326 THR327 GLY328 LYS329 ALA330 ALA331 GLU332 ALA333 ALA334 LEU335 GLY336 ALA337 ALA338 HIS339 ILE340 THR341 VAL342 ASN343 LYS344 ASN345 ALA346 ILE347 PRO348 ASN349 ASP350 PRO351 GLU352 LYS353 PRO354 PHE355 VAL356 THR357 SER358 GLY359 ILE360 ARG361 LEU362 GLY363 SER364 PRO365 ALA366 MET367 THR368 THR369 ARG370 GLY371 PHE372 GLY373 PRO374 ALA375 GLU376 ALA377 GLU378 GLN379 VAL380 GLY381 ASN382 LEU383 ILE384 ALA385 ASP386 VAL387 LEU388 GLU389 ASN390 PRO391 GLU392 ASP393 ALA394 ALA395 THR396 ILE397 GLU398 ARG399 VAL400 ARG401 ALA402 GLN403 VAL404 ALA405 GLU406 LEU407 THR408 LYS409 ARG410 PHE411 PRO412 VAL413 TYR414
Unit 4 SER7 THR8 ILE9 ALA10 ASN11 VAL12 ASP13 PRO14 GLU15 ILE16 PHE17 ALA18 ALA19 ILE20 GLU21 GLN22 GLU23 ASN24 ARG25 ARG26 GLN27 GLU28 ASP29 HIS30 ILE31 GLU32 LEU33 ILE34 ALA35 SER36 GLU37 ASN38 TYR39 THR40 SER41 PRO42 ALA43 VAL44 MET45 ALA46 ALA47 GLN48 GLY49 SER50 GLN51 LEU52 THR53 ASN54 LYS55 TYR56 ALA57 GLU58 GLY59 TYR60 PRO61 GLY62 LYS63 ARG64 TYR65 TYR66 GLY67 GLY68 CYS69 GLU70 TYR71 VAL72 ASP73 VAL74 VAL75 GLU76 GLN77 LEU78 ALA79 ILE80 ASP81 ARG82 VAL83 LYS84 GLN85 LEU86 PHE87 GLY88 ALA89 GLU90 ALA91 ALA92 ASN93 VAL94 GLN95 PRO96 ASN97 SER98 GLY99 SER100 GLN101 ALA102 ASN103 GLN104 GLY105 VAL106 PHE107 PHE108 ALA109 MET110 LEU111 LYS112 PRO113 GLY114 ASP115 THR116 ILE117 MET118 GLY119 MET120 SER121 LEU122 ALA123 HIS124 GLY125 GLY126 HIS127 LEU128 THR129 HIS130 GLY131 SER132 PRO133 VAL134 ASN135 MET136 SER137 GLY138 LYS139 TRP140 PHE141 ASN142 VAL143 VAL144 SER145 TYR146 GLY147 LEU148 ASN149 GLU150 ASN151 GLU152 ASP153 ILE154 ASP155 TYR156 ASP157 ALA158 ALA159 GLU160 LYS161 LEU162 ALA163 ASN164 GLU165 HIS166 LYS167 PRO168 LYS169 LEU170 ILE171 VAL172 ALA173 GLY174 ALA175 SER176 ALA177 PHE178 ALA179 LEU180 LYS181 ILE182 ASP183 PHE184 GLU185 ARG186 LEU187 ALA188 LYS189 ILE190 ALA191 LYS192 SER193 VAL194 GLY195 ALA196 TYR197 LEU198 MET199 VAL200 ASP201 MET202 ALA203 HIS204 TYR205 ALA206 GLY207 LEU208 ILE209 ALA210 ALA211 GLY212 VAL213 TYR214 PRO215 ASN216 PRO217 VAL218 PRO219 HIS220 ALA221 ASP222 PHE223 VAL224 THR225 THR226 THR227 THR228 HIS229 LYS230 SER231 LEU232 ARG233 GLY234 PRO235 ARG236 GLY237 GLY238 VAL239 ILE240 LEU241 MET242 LYS243 ALA244 GLU245 TYR246 GLU247 LYS248 PRO249 ILE250 ASN251 SER252 ALA253 ILE254 PHE255 PRO256 GLY257 ILE258 GLN259 GLY260 GLY261 PRO262 LEU263 MET264 HIS265 VAL266 ILE267 ALA268 ALA269 LYS270 ALA271 VAL272 ALA273 PHE274 LYS275 GLU276 ALA277 LEU278 SER279 PRO280 GLU281 PHE282 LYS283 GLU284 TYR285 GLN286 GLN287 LYS288 VAL289 VAL290 GLU291 ASN292 ALA293 ARG294 VAL295 LEU296 ALA297 GLU298 THR299 LEU300 VAL301 LYS302 ARG303 GLY304 LEU305 ARG306 ILE307 VAL308 SER309 GLY310 ARG311 THR312 GLU313 SER314 HIS315 VAL316 MET317 LEU318 VAL319 ASP320 LEU321 ARG322 ALA323 LYS324 HIS325 ILE326 THR327 GLY328 LYS329 ALA330 ALA331 GLU332 ALA333 ALA334 LEU335 GLY336 ALA337 ALA338 HIS339 ILE340 THR341 VAL342 ASN343 LYS344 ASN345 ALA346 ILE347 PRO348 ASN349 ASP350 PRO351 GLU352 LYS353 PRO354 PHE355 VAL356 THR357 SER358 GLY359 ILE360 ARG361 LEU362 GLY363 SER364 PRO365 ALA366 MET367 THR368 THR369 ARG370 GLY371 PHE372 GLY373 PRO374 ALA375 GLU376 ALA377 GLU378 GLN379 VAL380 GLY381 ASN382 LEU383 ILE384 ALA385 ASP386 VAL387 LEU388 GLU389 ASN390 PRO391 GLU392 ASP393 ALA394 ALA395 THR396 ILE397 GLU398 ARG399 VAL400 ARG401 ALA402 GLN403 VAL404 ALA405 GLU406 LEU407 THR408 LYS409 ARG410 PHE411 PRO412 VAL413 TYR414
Unit 5 PLP501 SER502 SER503
Unit 6 PLP501 SER502
Unit 8 SER503

Ligands
Unit 7 PLP700
Unit 9 PLP800

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany