4OT1 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL BASIS FOR THE RECOGNITION OF HUMAN CYTOMEGALOVIRU GLYCOPROTEIN B BY THE NEUTRALIZING HUMAN ANTIBODY SM5-1
• Keywords: IMMUNOGLOBULIN, PH DOMAIN, ANTIBODY-ANTIGEN RECOGNITION, VIR PROTEIN-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4OT1	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ENVELOPE GLYCOPROTEIN B	A	113	892	0
2	Protein	SM5-1 FAB HEAVY CHAIN	H	232	1720	0
3	Protein	SM5-1 FAB LIGHT CHAIN	L	214	1569	0
4	Ligand	ENVELOPE GLYCOPROTEIN B	A	1	0	4
5	Ligand	SM5-1 FAB HEAVY CHAIN	H	1	0	4
6	Ligand	SM5-1 FAB LIGHT CHAIN	L	2	0	19
7	Water			248	0	248
total				811	4181	275

Proteins

Unit 1	GLU 119 ASP 120 LEU 121 ASP 122 GLU 123 GLY 124 ILE 125 MET 126 VAL 127 VAL 128 TYR 129 LYS 130 ARG 131 ASN 132 ILE 133 ALA 201 GLY 202 SER 203 GLY 204 CYS 344 GLN 345 LEU 346 THR 347 PHE 348 TRP 349 GLU 350 ALA 351 SER 352 GLU 353 ARG 354 THR 355 ILE 356 ARG 357 SER 358 GLU 359 ALA 360 GLU 361 ASP 362 SER 363 TYR 364 HIS 365 PHE 366 SER 367 SER 368 ALA 369 LYS 370 MET 371 THR 372 ALA 373 THR 374 PHE 375 LEU 376 SER 377 LYS 378 LYS 379 GLN 380 GLU 381 VAL 382 ASN 383 MET 384 SER 385 ASP 386 SER 387 ALA 388 LEU 389 ASP 390 CYS 391 VAL 392 ARG 393 ASP 394 GLU 395 ALA 396 ALA 397 ALA 398 LYS 399 LEU 400 GLN 401 GLN 402 ILE 403 PHE 404 ASN 405 THR 406 SER 407 TYR 408 ASN 409 GLN 410 THR 411 TYR 412 GLU 413 LYS 414 TYR 415 GLY 416 ASN 417 VAL 418 SER 419 VAL 420 PHE 421 GLU 422 THR 423 THR 424 GLY 425 GLY 426 LEU 427 VAL 428 VAL 429 PHE 430 TRP 431 GLN 432 GLY 433 ILE 434 LYS 435 GLN 436 LYS 437
Unit 2	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 ARG 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 SER 28 LEU 29 LYS 30 ASP 31 HIS 32 TYR 33 MET 34 VAL 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TRP 50 ILE 51 ASN 52 PRO 53 GLN 54 SER 55 GLY 56 GLY 57 THR 58 GLY 59 TYR 60 GLY 61 GLN 62 LYS 63 PHE 64 GLN 65 GLY 66 ARG 67 VAL 68 THR 69 MET 70 THR 71 ARG 72 ASP 73 THR 74 SER 75 THR 76 ASN 77 THR 78 ALA 79 TYR 80 MET 81 ILE 82 LEU 83 SER 84 SER 85 LEU 86 ARG 87 SER 88 ASP 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 PHE 95 CYS 96 ALA 97 ARG 98 ASP 99 GLY 100 ALA 101 LYS 102 THR 103 VAL 104 SER 105 ASN 106 SER 107 GLY 108 LEU 109 SER 110 LEU 111 LEU 112 TYR 113 TYR 114 HIS 115 ASN 116 ARG 117 LEU 118 ASP 119 ALA 120 TRP 121 GLY 122 GLN 123 GLY 124 THR 125 MET 126 VAL 127 THR 128 VAL 129 SER 130 SER 131 ALA 132 SER 133 THR 134 LYS 135 GLY 136 PRO 137 SER 138 VAL 139 PHE 140 PRO 141 LEU 142 ALA 143 PRO 144 SER 145 SER 146 LYS 147 SER 148 THR 149 SER 150 GLY 151 GLY 152 THR 153 ALA 154 ALA 155 LEU 156 GLY 157 CYS 158 LEU 159 VAL 160 LYS 161 ASP 162 TYR 163 PHE 164 PRO 165 GLU 166 PRO 167 VAL 168 THR 169 VAL 170 SER 171 TRP 172 ASN 173 SER 174 GLY 175 ALA 176 LEU 177 THR 178 SER 179 GLY 180 VAL 181 HIS 182 THR 183 PHE 184 PRO 185 ALA 186 VAL 187 LEU 188 GLN 189 SER 190 SER 191 GLY 192 LEU 193 TYR 194 SER 195 LEU 196 SER 197 SER 198 VAL 199 VAL 200 THR 201 VAL 202 PRO 203 SER 204 SER 205 SER 206 LEU 207 GLY 208 THR 209 GLN 210 THR 211 TYR 212 ILE 213 CYS 214 ASN 215 VAL 216 ASN 217 HIS 218 LYS 219 PRO 220 SER 221 ASN 222 THR 223 LYS 224 VAL 225 ASP 226 LYS 227 LYS 228 VAL 229 GLU 230 PRO 231 LYS 232
Unit 3	GLN 1 SER 2 VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 VAL 10 SER 11 ALA 12 ALA 13 PRO 14 GLY 15 GLN 16 MET 17 VAL 18 THR 19 ILE 20 SER 21 CYS 22 SER 23 GLY 24 SER 25 SER 26 SER 27 ASN 28 ILE 29 GLY 30 LYS 31 ASN 32 TYR 33 VAL 34 SER 35 TRP 36 TYR 37 GLN 38 GLN 39 LEU 40 PRO 41 GLY 42 ALA 43 ALA 44 PRO 45 LYS 46 LEU 47 LEU 48 ILE 49 PHE 50 ASP 51 ASN 52 ASN 53 LYS 54 ARG 55 PRO 56 SER 57 GLY 58 THR 59 PRO 60 ASP 61 ARG 62 PHE 63 SER 64 GLY 65 SER 66 LYS 67 SER 68 GLY 69 THR 70 SER 71 ALA 72 THR 73 LEU 74 VAL 75 ILE 76 THR 77 GLY 78 LEU 79 GLN 80 THR 81 GLY 82 ASP 83 GLU 84 ALA 85 ASP 86 TYR 87 TYR 88 CYS 89 GLY 90 THR 91 PRO 92 ASP 93 ARG 94 SER 95 LEU 96 SER 97 VAL 98 VAL 99 PHE 100 GLY 101 GLY 102 GLY 103 THR 104 LYS 105 VAL 106 THR 107 VAL 108 LEU 109 GLY 110 GLN 111 PRO 112 LYS 113 ALA 114 ALA 115 PRO 116 SER 117 VAL 118 THR 119 LEU 120 PHE 121 PRO 122 PRO 123 SER 124 SER 125 GLU 126 GLU 127 LEU 128 GLN 129 ALA 130 ASN 131 LYS 132 ALA 133 THR 134 LEU 135 VAL 136 CYS 137 LEU 138 ILE 139 SER 140 ASP 141 PHE 142 TYR 143 PRO 144 GLY 145 ALA 146 VAL 147 THR 148 VAL 149 ALA 150 TRP 151 LYS 152 ALA 153 ASP 154 SER 155 SER 156 PRO 157 VAL 158 LYS 159 ALA 160 GLY 161 VAL 162 GLU 163 THR 164 THR 165 THR 166 PRO 167 SER 168 LYS 169 GLN 170 SER 171 ASN 172 ASN 173 LYS 174 TYR 175 ALA 176 ALA 177 SER 178 SER 179 TYR 180 LEU 181 SER 182 LEU 183 THR 184 PRO 185 GLU 186 GLN 187 TRP 188 LYS 189 SER 190 HIS 191 ARG 192 SER 193 TYR 194 SER 195 CYS 196 GLN 197 VAL 198 THR 199 HIS 200 GLU 201 GLY 202 SER 203 THR 204 VAL 205 GLU 206 LYS 207 THR 208 VAL 209 ALA 210 PRO 211 THR 212 GLU 213 CYS 214

Ligands

Unit 4	EDO 501
Unit 5	EDO 301
Unit 6	EPE 301 EDO 302