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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNF8 BOUND TO THE UBC13/MMS2 HETERODIME
Keywords COILED-COIL, E3 UBIQUITIN LIGASE, UBIQUITIN, PROTEIN BINDING PROTEIN BINDING-LIGASE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4ORH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2  A 139 1103 0
2  Protein   UBIQUITIN-CONJUGATING ENZYME E2 N  B 148 1178 0
3  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF8  C 92 723 0
4  Protein   UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2  E 138 1099 0
5  Protein   UBIQUITIN-CONJUGATING ENZYME E2 N  F 148 1178 0
6  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF8  G 139 958 0
7  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF8  H 142 972 0
8  Protein   UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2  I 138 1099 0
9  Protein   UBIQUITIN-CONJUGATING ENZYME E2 N  J 148 1178 0
10  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF8  K 139 958 0
11  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF8  L 142 972 0
12  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RNF8  C 2 0 2
13  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RNF8  G 2 0 2
14  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RNF8  H 2 0 2
15  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RNF8  K 2 0 2
16  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RNF8  L 2 0 2
total       1523 11418 10
Proteins
Unit 1 GLY6 VAL7 LYS8 VAL9 PRO10 ARG11 ASN12 PHE13 ARG14 LEU15 LEU16 GLU17 GLU18 LEU19 GLU20 GLU21 GLY22 GLN23 LYS24 GLY25 VAL26 GLY27 ASP28 GLY29 THR30 VAL31 SER32 TRP33 GLY34 LEU35 GLU36 ASP37 ASP38 GLU39 ASP40 MET41 THR42 LEU43 THR44 ARG45 TRP46 THR47 GLY48 MET49 ILE50 ILE51 GLY52 PRO53 PRO54 ARG55 THR56 ASN57 TYR58 GLU59 ASN60 ARG61 ILE62 TYR63 SER64 LEU65 LYS66 VAL67 GLU68 CYS69 GLY70 PRO71 LYS72 TYR73 PRO74 GLU75 ALA76 PRO77 PRO78 SER79 VAL80 ARG81 PHE82 VAL83 THR84 LYS85 ILE86 ASN87 MET88 ASN89 GLY90 ILE91 ASN92 ASN93 SER94 SER95 GLY96 MET97 VAL98 ASP99 ALA100 ARG101 SER102 ILE103 PRO104 VAL105 LEU106 ALA107 LYS108 TRP109 GLN110 ASN111 SER112 TYR113 SER114 ILE115 LYS116 VAL117 VAL118 LEU119 GLN120 GLU121 LEU122 ARG123 ARG124 LEU125 MET126 MET127 SER128 LYS129 GLU130 ASN131 MET132 LYS133 LEU134 PRO135 GLN136 PRO137 PRO138 GLU139 GLY140 GLN141 THR142 TYR143 ASN144
Unit 2 GLY3 LEU4 PRO5 ARG6 ARG7 ILE8 ILE9 LYS10 GLU11 THR12 GLN13 ARG14 LEU15 LEU16 ALA17 GLU18 PRO19 VAL20 PRO21 GLY22 ILE23 LYS24 ALA25 GLU26 PRO27 ASP28 GLU29 SER30 ASN31 ALA32 ARG33 TYR34 PHE35 HIS36 VAL37 VAL38 ILE39 ALA40 GLY41 PRO42 GLN43 ASP44 SER45 PRO46 PHE47 GLU48 GLY49 GLY50 THR51 PHE52 LYS53 LEU54 GLU55 LEU56 PHE57 LEU58 PRO59 GLU60 GLU61 TYR62 PRO63 MET64 ALA65 ALA66 PRO67 LYS68 VAL69 ARG70 PHE71 MET72 THR73 LYS74 ILE75 TYR76 HIS77 PRO78 ASN79 VAL80 ASP81 LYS82 LEU83 GLY84 ARG85 ILE86 CYS87 LEU88 ASP89 ILE90 LEU91 LYS92 ASP93 LYS94 TRP95 SER96 PRO97 ALA98 LEU99 GLN100 ILE101 ARG102 THR103 VAL104 LEU105 LEU106 SER107 ILE108 GLN109 ALA110 LEU111 LEU112 SER113 ALA114 PRO115 ASN116 PRO117 ASP118 ASP119 PRO120 LEU121 ALA122 ASN123 ASP124 VAL125 ALA126 GLU127 GLN128 TRP129 LYS130 THR131 ASN132 GLU133 ALA134 GLN135 ALA136 ILE137 GLU138 THR139 ALA140 ARG141 ALA142 TRP143 THR144 ARG145 LEU146 TYR147 ALA148 MET149 ASN150
Unit 3 HIS392 MET393 ASN394 ASP395 VAL396 LEU397 GLU398 ASN399 GLU400 LEU401 GLN402 CYS403 ILE404 ILE405 CYS406 SER407 GLU408 TYR409 PHE410 ILE411 GLU412 ALA413 VAL414 THR415 LEU416 ASN417 CYS418 ALA419 HIS420 SER421 PHE422 CYS423 SER424 TYR425 CYS426 ILE427 ASN428 GLU429 TRP430 MET431 LYS432 ARG433 LYS434 ILE435 GLU436 CYS437 PRO438 ILE439 CYS440 ARG441 LYS442 ASP443 ILE444 LYS445 SER446 LYS447 THR448 TYR449 SER450 LEU451 VAL452 LEU453 ASP454 ASN455 CYS456 ILE457 ASN458 LYS459 MET460 VAL461 ASN462 ASN463 LEU464 SER465 SER466 GLU467 VAL468 LYS469 GLU470 ARG471 ARG472 ILE473 VAL474 LEU475 ILE476 ARG477 GLU478 ARG479 LYS480 ALA481 LYS482 ARG483
Unit 4 VAL7 LYS8 VAL9 PRO10 ARG11 ASN12 PHE13 ARG14 LEU15 LEU16 GLU17 GLU18 LEU19 GLU20 GLU21 GLY22 GLN23 LYS24 GLY25 VAL26 GLY27 ASP28 GLY29 THR30 VAL31 SER32 TRP33 GLY34 LEU35 GLU36 ASP37 ASP38 GLU39 ASP40 MET41 THR42 LEU43 THR44 ARG45 TRP46 THR47 GLY48 MET49 ILE50 ILE51 GLY52 PRO53 PRO54 ARG55 THR56 ASN57 TYR58 GLU59 ASN60 ARG61 ILE62 TYR63 SER64 LEU65 LYS66 VAL67 GLU68 CYS69 GLY70 PRO71 LYS72 TYR73 PRO74 GLU75 ALA76 PRO77 PRO78 SER79 VAL80 ARG81 PHE82 VAL83 THR84 LYS85 ILE86 ASN87 MET88 ASN89 GLY90 ILE91 ASN92 ASN93 SER94 SER95 GLY96 MET97 VAL98 ASP99 ALA100 ARG101 SER102 ILE103 PRO104 VAL105 LEU106 ALA107 LYS108 TRP109 GLN110 ASN111 SER112 TYR113 SER114 ILE115 LYS116 VAL117 VAL118 LEU119 GLN120 GLU121 LEU122 ARG123 ARG124 LEU125 MET126 MET127 SER128 LYS129 GLU130 ASN131 MET132 LYS133 LEU134 PRO135 GLN136 PRO137 PRO138 GLU139 GLY140 GLN141 THR142 TYR143 ASN144
Unit 5 GLY3 LEU4 PRO5 ARG6 ARG7 ILE8 ILE9 LYS10 GLU11 THR12 GLN13 ARG14 LEU15 LEU16 ALA17 GLU18 PRO19 VAL20 PRO21 GLY22 ILE23 LYS24 ALA25 GLU26 PRO27 ASP28 GLU29 SER30 ASN31 ALA32 ARG33 TYR34 PHE35 HIS36 VAL37 VAL38 ILE39 ALA40 GLY41 PRO42 GLN43 ASP44 SER45 PRO46 PHE47 GLU48 GLY49 GLY50 THR51 PHE52 LYS53 LEU54 GLU55 LEU56 PHE57 LEU58 PRO59 GLU60 GLU61 TYR62 PRO63 MET64 ALA65 ALA66 PRO67 LYS68 VAL69 ARG70 PHE71 MET72 THR73 LYS74 ILE75 TYR76 HIS77 PRO78 ASN79 VAL80 ASP81 LYS82 LEU83 GLY84 ARG85 ILE86 CYS87 LEU88 ASP89 ILE90 LEU91 LYS92 ASP93 LYS94 TRP95 SER96 PRO97 ALA98 LEU99 GLN100 ILE101 ARG102 THR103 VAL104 LEU105 LEU106 SER107 ILE108 GLN109 ALA110 LEU111 LEU112 SER113 ALA114 PRO115 ASN116 PRO117 ASP118 ASP119 PRO120 LEU121 ALA122 ASN123 ASP124 VAL125 ALA126 GLU127 GLN128 TRP129 LYS130 THR131 ASN132 GLU133 ALA134 GLN135 ALA136 ILE137 GLU138 THR139 ALA140 ARG141 ALA142 TRP143 THR144 ARG145 LEU146 TYR147 ALA148 MET149 ASN150
Unit 6 GLN345 GLU346 HIS347 TRP348 ALA349 LEU350 MET351 GLU352 GLU353 LEU354 ASN355 ARG356 SER357 LYS358 LYS359 ASP360 PHE361 GLU362 ALA363 ILE364 ILE365 GLN366 ALA367 LYS368 ASN369 LYS370 GLU371 LEU372 GLU373 GLN374 THR375 LYS376 GLU377 GLU378 LYS379 GLU380 LYS381 MET382 GLN383 ALA384 GLN385 LYS386 GLU387 GLU388 VAL389 LEU390 SER391 HIS392 MET393 ASN394 ASP395 VAL396 LEU397 GLU398 ASN399 GLU400 LEU401 GLN402 CYS403 ILE404 ILE405 CYS406 SER407 GLU408 TYR409 PHE410 ILE411 GLU412 ALA413 VAL414 THR415 LEU416 ASN417 CYS418 ALA419 HIS420 SER421 PHE422 CYS423 SER424 TYR425 CYS426 ILE427 ASN428 GLU429 TRP430 MET431 LYS432 ARG433 LYS434 ILE435 GLU436 CYS437 PRO438 ILE439 CYS440 ARG441 LYS442 ASP443 ILE444 LYS445 SER446 LYS447 THR448 TYR449 SER450 LEU451 VAL452 LEU453 ASP454 ASN455 CYS456 ILE457 ASN458 LYS459 MET460 VAL461 ASN462 ASN463 LEU464 SER465 SER466 GLU467 VAL468 LYS469 GLU470 ARG471 ARG472 ILE473 VAL474 LEU475 ILE476 ARG477 GLU478 ARG479 LYS480 ALA481 LYS482 ARG483
Unit 7 PRO342 GLU343 PHE344 GLN345 GLU346 HIS347 TRP348 ALA349 LEU350 MET351 GLU352 GLU353 LEU354 ASN355 ARG356 SER357 LYS358 LYS359 ASP360 PHE361 GLU362 ALA363 ILE364 ILE365 GLN366 ALA367 LYS368 ASN369 LYS370 GLU371 LEU372 GLU373 GLN374 THR375 LYS376 GLU377 GLU378 LYS379 GLU380 LYS381 MET382 GLN383 ALA384 GLN385 LYS386 GLU387 GLU388 VAL389 LEU390 SER391 HIS392 MET393 ASN394 ASP395 VAL396 LEU397 GLU398 ASN399 GLU400 LEU401 GLN402 CYS403 ILE404 ILE405 CYS406 SER407 GLU408 TYR409 PHE410 ILE411 GLU412 ALA413 VAL414 THR415 LEU416 ASN417 CYS418 ALA419 HIS420 SER421 PHE422 CYS423 SER424 TYR425 CYS426 ILE427 ASN428 GLU429 TRP430 MET431 LYS432 ARG433 LYS434 ILE435 GLU436 CYS437 PRO438 ILE439 CYS440 ARG441 LYS442 ASP443 ILE444 LYS445 SER446 LYS447 THR448 TYR449 SER450 LEU451 VAL452 LEU453 ASP454 ASN455 CYS456 ILE457 ASN458 LYS459 MET460 VAL461 ASN462 ASN463 LEU464 SER465 SER466 GLU467 VAL468 LYS469 GLU470 ARG471 ARG472 ILE473 VAL474 LEU475 ILE476 ARG477 GLU478 ARG479 LYS480 ALA481 LYS482 ARG483
Unit 8 VAL7 LYS8 VAL9 PRO10 ARG11 ASN12 PHE13 ARG14 LEU15 LEU16 GLU17 GLU18 LEU19 GLU20 GLU21 GLY22 GLN23 LYS24 GLY25 VAL26 GLY27 ASP28 GLY29 THR30 VAL31 SER32 TRP33 GLY34 LEU35 GLU36 ASP37 ASP38 GLU39 ASP40 MET41 THR42 LEU43 THR44 ARG45 TRP46 THR47 GLY48 MET49 ILE50 ILE51 GLY52 PRO53 PRO54 ARG55 THR56 ASN57 TYR58 GLU59 ASN60 ARG61 ILE62 TYR63 SER64 LEU65 LYS66 VAL67 GLU68 CYS69 GLY70 PRO71 LYS72 TYR73 PRO74 GLU75 ALA76 PRO77 PRO78 SER79 VAL80 ARG81 PHE82 VAL83 THR84 LYS85 ILE86 ASN87 MET88 ASN89 GLY90 ILE91 ASN92 ASN93 SER94 SER95 GLY96 MET97 VAL98 ASP99 ALA100 ARG101 SER102 ILE103 PRO104 VAL105 LEU106 ALA107 LYS108 TRP109 GLN110 ASN111 SER112 TYR113 SER114 ILE115 LYS116 VAL117 VAL118 LEU119 GLN120 GLU121 LEU122 ARG123 ARG124 LEU125 MET126 MET127 SER128 LYS129 GLU130 ASN131 MET132 LYS133 LEU134 PRO135 GLN136 PRO137 PRO138 GLU139 GLY140 GLN141 THR142 TYR143 ASN144
Unit 9 GLY3 LEU4 PRO5 ARG6 ARG7 ILE8 ILE9 LYS10 GLU11 THR12 GLN13 ARG14 LEU15 LEU16 ALA17 GLU18 PRO19 VAL20 PRO21 GLY22 ILE23 LYS24 ALA25 GLU26 PRO27 ASP28 GLU29 SER30 ASN31 ALA32 ARG33 TYR34 PHE35 HIS36 VAL37 VAL38 ILE39 ALA40 GLY41 PRO42 GLN43 ASP44 SER45 PRO46 PHE47 GLU48 GLY49 GLY50 THR51 PHE52 LYS53 LEU54 GLU55 LEU56 PHE57 LEU58 PRO59 GLU60 GLU61 TYR62 PRO63 MET64 ALA65 ALA66 PRO67 LYS68 VAL69 ARG70 PHE71 MET72 THR73 LYS74 ILE75 TYR76 HIS77 PRO78 ASN79 VAL80 ASP81 LYS82 LEU83 GLY84 ARG85 ILE86 CYS87 LEU88 ASP89 ILE90 LEU91 LYS92 ASP93 LYS94 TRP95 SER96 PRO97 ALA98 LEU99 GLN100 ILE101 ARG102 THR103 VAL104 LEU105 LEU106 SER107 ILE108 GLN109 ALA110 LEU111 LEU112 SER113 ALA114 PRO115 ASN116 PRO117 ASP118 ASP119 PRO120 LEU121 ALA122 ASN123 ASP124 VAL125 ALA126 GLU127 GLN128 TRP129 LYS130 THR131 ASN132 GLU133 ALA134 GLN135 ALA136 ILE137 GLU138 THR139 ALA140 ARG141 ALA142 TRP143 THR144 ARG145 LEU146 TYR147 ALA148 MET149 ASN150
Unit 10 GLN345 GLU346 HIS347 TRP348 ALA349 LEU350 MET351 GLU352 GLU353 LEU354 ASN355 ARG356 SER357 LYS358 LYS359 ASP360 PHE361 GLU362 ALA363 ILE364 ILE365 GLN366 ALA367 LYS368 ASN369 LYS370 GLU371 LEU372 GLU373 GLN374 THR375 LYS376 GLU377 GLU378 LYS379 GLU380 LYS381 MET382 GLN383 ALA384 GLN385 LYS386 GLU387 GLU388 VAL389 LEU390 SER391 HIS392 MET393 ASN394 ASP395 VAL396 LEU397 GLU398 ASN399 GLU400 LEU401 GLN402 CYS403 ILE404 ILE405 CYS406 SER407 GLU408 TYR409 PHE410 ILE411 GLU412 ALA413 VAL414 THR415 LEU416 ASN417 CYS418 ALA419 HIS420 SER421 PHE422 CYS423 SER424 TYR425 CYS426 ILE427 ASN428 GLU429 TRP430 MET431 LYS432 ARG433 LYS434 ILE435 GLU436 CYS437 PRO438 ILE439 CYS440 ARG441 LYS442 ASP443 ILE444 LYS445 SER446 LYS447 THR448 TYR449 SER450 LEU451 VAL452 LEU453 ASP454 ASN455 CYS456 ILE457 ASN458 LYS459 MET460 VAL461 ASN462 ASN463 LEU464 SER465 SER466 GLU467 VAL468 LYS469 GLU470 ARG471 ARG472 ILE473 VAL474 LEU475 ILE476 ARG477 GLU478 ARG479 LYS480 ALA481 LYS482 ARG483
Unit 11 PRO342 GLU343 PHE344 GLN345 GLU346 HIS347 TRP348 ALA349 LEU350 MET351 GLU352 GLU353 LEU354 ASN355 ARG356 SER357 LYS358 LYS359 ASP360 PHE361 GLU362 ALA363 ILE364 ILE365 GLN366 ALA367 LYS368 ASN369 LYS370 GLU371 LEU372 GLU373 GLN374 THR375 LYS376 GLU377 GLU378 LYS379 GLU380 LYS381 MET382 GLN383 ALA384 GLN385 LYS386 GLU387 GLU388 VAL389 LEU390 SER391 HIS392 MET393 ASN394 ASP395 VAL396 LEU397 GLU398 ASN399 GLU400 LEU401 GLN402 CYS403 ILE404 ILE405 CYS406 SER407 GLU408 TYR409 PHE410 ILE411 GLU412 ALA413 VAL414 THR415 LEU416 ASN417 CYS418 ALA419 HIS420 SER421 PHE422 CYS423 SER424 TYR425 CYS426 ILE427 ASN428 GLU429 TRP430 MET431 LYS432 ARG433 LYS434 ILE435 GLU436 CYS437 PRO438 ILE439 CYS440 ARG441 LYS442 ASP443 ILE444 LYS445 SER446 LYS447 THR448 TYR449 SER450 LEU451 VAL452 LEU453 ASP454 ASN455 CYS456 ILE457 ASN458 LYS459 MET460 VAL461 ASN462 ASN463 LEU464 SER465 SER466 GLU467 VAL468 LYS469 GLU470 ARG471 ARG472 ILE473 VAL474 LEU475 ILE476 ARG477 GLU478 ARG479 LYS480 ALA481 LYS482 ARG483
Ligands
Unit 12 ZN501 ZN502
Unit 13 ZN501 ZN502
Unit 14 ZN501 ZN502
Unit 15 ZN501 ZN502
Unit 16 ZN501 ZN502
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany