4OQB - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF HUMAN PARP-1 BOUND TO A DNA DOUBLE STRAND BREAK COMPLEX WITH (2Z)-2-{4-[2-(MORPHOLIN-4-YL)ETHOXY]BENZYLIDEN 2,3-DIHYDRO-1-BENZOFURAN-7-CARBOXAMIDE
• Keywords: ZINC FINGER, DNA BINDING, PARP, POLYMERASE, DNA REPAIR, POLY RIBOSYL)ATION, TRANSFERASE-DNA-TRANSFERASE INHIBITOR COMPLE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4OQB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	POLY [ADP-RIBOSE] POLYMERASE 1	A	222	1747	0
2	Protein	POLY [ADP-RIBOSE] POLYMERASE 1	C	456	3586	0
3	Protein	POLY [ADP-RIBOSE] POLYMERASE 1	D	222	1747	0
4	Protein	POLY [ADP-RIBOSE] POLYMERASE 1	F	456	3586	0
5	Other macromolecule	DNA (26-MER)	M	26	530	0
6	Other macromolecule	DNA (26-MER)	N	26	530	0
7	Ligand	POLY [ADP-RIBOSE] POLYMERASE 1	A	2	0	2
8	Ligand	POLY [ADP-RIBOSE] POLYMERASE 1	C	1	0	29
9	Ligand	POLY [ADP-RIBOSE] POLYMERASE 1	D	2	0	2
total				1413	11726	33

Proteins

Unit 1	ASP 6 LYS 7 LEU 8 TYR 9 ARG 10 VAL 11 GLU 12 TYR 13 ALA 14 LYS 15 SER 16 GLY 17 ARG 18 ALA 19 SER 20 CYS 21 LYS 22 LYS 23 CYS 24 SER 25 GLU 26 SER 27 ILE 28 PRO 29 LYS 30 ASP 31 SER 32 LEU 33 ARG 34 MET 35 ALA 36 ILE 37 MET 38 VAL 39 GLN 40 SER 41 PRO 42 MET 43 PHE 44 ASP 45 GLY 46 LYS 47 VAL 48 PRO 49 HIS 50 TRP 51 TYR 52 HIS 53 PHE 54 SER 55 CYS 56 PHE 57 TRP 58 LYS 59 VAL 60 GLY 61 HIS 62 SER 63 ILE 64 ARG 65 HIS 66 PRO 67 ASP 68 VAL 69 GLU 70 VAL 71 ASP 72 GLY 73 PHE 74 SER 75 GLU 76 LEU 77 ARG 78 TRP 79 ASP 80 ASP 81 GLN 82 GLN 83 LYS 84 VAL 85 LYS 86 LYS 87 THR 88 ALA 89 GLU 90 ALA 91 SER 224 LYS 225 LYS 226 GLU 227 LYS 228 ASP 229 LYS 230 ASP 231 SER 232 LYS 233 LEU 234 GLU 235 LYS 236 ALA 237 LEU 238 LYS 239 ALA 240 GLN 241 ASN 242 ASP 243 LEU 244 ILE 245 TRP 246 ASN 247 ILE 248 LYS 249 ASP 250 GLU 251 LEU 252 LYS 253 LYS 254 VAL 255 CYS 256 SER 257 THR 258 ASN 259 ASP 260 LEU 261 LYS 262 GLU 263 LEU 264 LEU 265 ILE 266 PHE 267 ASN 268 LYS 269 GLN 270 GLN 271 VAL 272 PRO 273 SER 274 GLY 275 GLU 276 SER 277 ALA 278 ILE 279 LEU 280 ASP 281 ARG 282 VAL 283 ALA 284 ASP 285 GLY 286 MET 287 VAL 288 PHE 289 GLY 290 ALA 291 LEU 292 LEU 293 PRO 294 CYS 295 GLU 296 GLU 297 CYS 298 SER 299 GLY 300 GLN 301 LEU 302 VAL 303 PHE 304 LYS 305 SER 306 ASP 307 ALA 308 TYR 309 TYR 310 CYS 311 THR 312 GLY 313 ASP 314 VAL 315 THR 316 ALA 317 TRP 318 THR 319 LYS 320 CYS 321 MET 322 VAL 323 LYS 324 THR 325 GLN 326 THR 327 PRO 328 ASN 329 ARG 330 LYS 331 GLU 332 TRP 333 VAL 334 THR 335 PRO 336 LYS 337 GLU 338 PHE 339 ARG 340 GLU 341 ILE 342 SER 343 TYR 344 LEU 345 LYS 346 LYS 347 LEU 348 LYS 349 VAL 350 LYS 351 LYS 352 GLN 353 ASP 354 ARG 355 ILE 356 PHE 357 PRO 358 PRO 359
Unit 2	ALA 531 ALA 532 VAL 533 ASP 534 PRO 535 ASP 536 SER 537 GLY 538 LEU 539 GLU 540 HIS 541 SER 542 ALA 543 HIS 544 VAL 545 LEU 546 GLU 547 LYS 548 GLY 549 GLY 550 LYS 551 VAL 552 PHE 553 SER 554 ALA 555 THR 556 LEU 557 GLY 558 LEU 559 VAL 560 ASP 561 ILE 562 VAL 563 LYS 564 GLY 565 THR 566 ASN 567 SER 568 TYR 569 TYR 570 LYS 571 LEU 572 GLN 573 LEU 574 LEU 575 TRP 584 ILE 585 PHE 586 ARG 587 SER 588 TRP 589 GLY 590 ARG 591 VAL 592 GLY 593 THR 594 VAL 595 ILE 596 GLY 597 SER 598 ASN 599 LYS 600 LEU 601 GLU 602 GLN 603 MET 604 PRO 605 SER 606 LYS 607 GLU 608 ASP 609 ALA 610 ILE 611 GLU 612 HIS 613 PHE 614 MET 615 LYS 616 LEU 617 TYR 618 GLU 619 GLU 620 LYS 621 THR 622 GLY 623 ASN 624 ALA 625 TRP 626 HIS 627 SER 628 LYS 629 ASN 630 PHE 631 THR 632 LYS 633 TYR 634 PRO 635 LYS 636 LYS 637 PHE 638 TYR 639 PRO 640 LEU 641 GLU 642 ILE 643 ASP 644 LYS 662 SER 663 LYS 664 LEU 665 PRO 666 LYS 667 PRO 668 VAL 669 GLN 670 ASP 671 LEU 672 ILE 673 LYS 674 MET 675 ILE 676 PHE 677 ASP 678 VAL 679 GLU 680 SER 681 MET 682 LYS 683 LYS 684 ALA 685 MET 686 VAL 687 GLU 688 TYR 689 GLU 690 ILE 691 ASP 692 LEU 693 GLN 694 LYS 695 MET 696 PRO 697 LEU 698 GLY 699 LYS 700 LEU 701 SER 702 LYS 703 ARG 704 GLN 705 ILE 706 GLN 707 ALA 708 ALA 709 TYR 710 SER 711 ILE 712 LEU 713 SER 714 GLU 715 VAL 716 GLN 717 GLN 718 ALA 719 VAL 720 SER 721 GLN 722 GLY 723 SER 724 SER 725 ASP 726 SER 727 GLN 728 ILE 729 LEU 730 ASP 731 LEU 732 SER 733 ASN 734 ARG 735 PHE 736 TYR 737 THR 738 LEU 739 ILE 740 PRO 741 HIS 742 ASP 743 PHE 744 GLY 745 MET 746 LYS 747 LYS 748 PRO 749 PRO 750 LEU 751 LEU 752 ASN 753 ASN 754 ALA 755 ASP 756 SER 757 VAL 758 GLN 759 ALA 760 LYS 761 VAL 762 GLU 763 MET 764 LEU 765 ASP 766 ASN 767 LEU 768 LEU 769 ASP 770 ILE 771 GLU 772 VAL 773 ALA 774 TYR 775 SER 776 LEU 777 LEU 778 ARG 779 GLY 780 GLY 781 SER 782 ASP 783 ASP 784 SER 785 SER 786 LYS 787 ASP 788 PRO 789 ILE 790 ASP 791 VAL 792 ASN 793 TYR 794 GLU 795 LYS 796 LEU 797 LYS 798 THR 799 ASP 800 ILE 801 LYS 802 VAL 803 VAL 804 ASP 805 ARG 806 ASP 807 SER 808 GLU 809 GLU 810 ALA 811 GLU 812 ILE 813 ILE 814 ARG 815 LYS 816 TYR 817 VAL 818 LYS 819 ASN 820 THR 821 HIS 822 ALA 823 THR 824 THR 825 HIS 826 ASN 827 ALA 828 TYR 829 ASP 830 LEU 831 GLU 832 VAL 833 ILE 834 ASP 835 ILE 836 PHE 837 LYS 838 ILE 839 GLU 840 ARG 841 GLU 842 GLY 843 GLU 844 CYS 845 GLN 846 ARG 847 TYR 848 LYS 849 PRO 850 PHE 851 LYS 852 GLN 853 LEU 854 HIS 855 ASN 856 ARG 857 ARG 858 LEU 859 LEU 860 TRP 861 HIS 862 GLY 863 SER 864 ARG 865 THR 866 THR 867 ASN 868 PHE 869 ALA 870 GLY 871 ILE 872 LEU 873 SER 874 GLN 875 GLY 876 LEU 877 ARG 878 ILE 879 ALA 880 PRO 881 PRO 882 GLU 883 ALA 884 PRO 885 VAL 886 THR 887 GLY 888 TYR 889 MET 890 PHE 891 GLY 892 LYS 893 GLY 894 ILE 895 TYR 896 PHE 897 ALA 898 ASP 899 MET 900 VAL 901 SER 902 LYS 903 SER 904 ALA 905 ASN 906 TYR 907 CYS 908 HIS 909 THR 910 SER 911 GLN 912 GLY 913 ASP 914 PRO 915 ILE 916 GLY 917 LEU 918 ILE 919 LEU 920 LEU 921 GLY 922 GLU 923 VAL 924 ALA 925 LEU 926 GLY 927 ASN 928 MET 929 TYR 930 GLU 931 LEU 932 LYS 933 HIS 934 ALA 935 SER 936 HIS 937 ILE 938 SER 939 LYS 940 LEU 941 PRO 942 LYS 943 GLY 944 LYS 945 HIS 946 SER 947 VAL 948 LYS 949 GLY 950 LEU 951 GLY 952 LYS 953 THR 954 THR 955 PRO 956 ASP 957 PRO 958 SER 959 ALA 960 ASN 961 ILE 962 SER 963 LEU 964 ASP 965 GLY 966 VAL 967 ASP 968 VAL 969 PRO 970 LEU 971 GLY 972 THR 973 GLY 974 ILE 975 SER 976 SER 977 GLY 978 VAL 979 ASN 980 ASP 981 THR 982 SER 983 LEU 984 LEU 985 TYR 986 ASN 987 GLU 988 TYR 989 ILE 990 VAL 991 TYR 992 ASP 993 ILE 994 ALA 995 GLN 996 VAL 997 ASN 998 LEU 999 LYS 1000 TYR 1001 LEU 1002 LEU 1003 LYS 1004 LEU 1005 LYS 1006 PHE 1007 ASN 1008 PHE 1009 LYS 1010 THR 1011
Unit 3	ASP 6 LYS 7 LEU 8 TYR 9 ARG 10 VAL 11 GLU 12 TYR 13 ALA 14 LYS 15 SER 16 GLY 17 ARG 18 ALA 19 SER 20 CYS 21 LYS 22 LYS 23 CYS 24 SER 25 GLU 26 SER 27 ILE 28 PRO 29 LYS 30 ASP 31 SER 32 LEU 33 ARG 34 MET 35 ALA 36 ILE 37 MET 38 VAL 39 GLN 40 SER 41 PRO 42 MET 43 PHE 44 ASP 45 GLY 46 LYS 47 VAL 48 PRO 49 HIS 50 TRP 51 TYR 52 HIS 53 PHE 54 SER 55 CYS 56 PHE 57 TRP 58 LYS 59 VAL 60 GLY 61 HIS 62 SER 63 ILE 64 ARG 65 HIS 66 PRO 67 ASP 68 VAL 69 GLU 70 VAL 71 ASP 72 GLY 73 PHE 74 SER 75 GLU 76 LEU 77 ARG 78 TRP 79 ASP 80 ASP 81 GLN 82 GLN 83 LYS 84 VAL 85 LYS 86 LYS 87 THR 88 ALA 89 GLU 90 ALA 91 SER 224 LYS 225 LYS 226 GLU 227 LYS 228 ASP 229 LYS 230 ASP 231 SER 232 LYS 233 LEU 234 GLU 235 LYS 236 ALA 237 LEU 238 LYS 239 ALA 240 GLN 241 ASN 242 ASP 243 LEU 244 ILE 245 TRP 246 ASN 247 ILE 248 LYS 249 ASP 250 GLU 251 LEU 252 LYS 253 LYS 254 VAL 255 CYS 256 SER 257 THR 258 ASN 259 ASP 260 LEU 261 LYS 262 GLU 263 LEU 264 LEU 265 ILE 266 PHE 267 ASN 268 LYS 269 GLN 270 GLN 271 VAL 272 PRO 273 SER 274 GLY 275 GLU 276 SER 277 ALA 278 ILE 279 LEU 280 ASP 281 ARG 282 VAL 283 ALA 284 ASP 285 GLY 286 MET 287 VAL 288 PHE 289 GLY 290 ALA 291 LEU 292 LEU 293 PRO 294 CYS 295 GLU 296 GLU 297 CYS 298 SER 299 GLY 300 GLN 301 LEU 302 VAL 303 PHE 304 LYS 305 SER 306 ASP 307 ALA 308 TYR 309 TYR 310 CYS 311 THR 312 GLY 313 ASP 314 VAL 315 THR 316 ALA 317 TRP 318 THR 319 LYS 320 CYS 321 MET 322 VAL 323 LYS 324 THR 325 GLN 326 THR 327 PRO 328 ASN 329 ARG 330 LYS 331 GLU 332 TRP 333 VAL 334 THR 335 PRO 336 LYS 337 GLU 338 PHE 339 ARG 340 GLU 341 ILE 342 SER 343 TYR 344 LEU 345 LYS 346 LYS 347 LEU 348 LYS 349 VAL 350 LYS 351 LYS 352 GLN 353 ASP 354 ARG 355 ILE 356 PHE 357 PRO 358 PRO 359
Unit 4	ALA 531 ALA 532 VAL 533 ASP 534 PRO 535 ASP 536 SER 537 GLY 538 LEU 539 GLU 540 HIS 541 SER 542 ALA 543 HIS 544 VAL 545 LEU 546 GLU 547 LYS 548 GLY 549 GLY 550 LYS 551 VAL 552 PHE 553 SER 554 ALA 555 THR 556 LEU 557 GLY 558 LEU 559 VAL 560 ASP 561 ILE 562 VAL 563 LYS 564 GLY 565 THR 566 ASN 567 SER 568 TYR 569 TYR 570 LYS 571 LEU 572 GLN 573 LEU 574 LEU 575 TRP 584 ILE 585 PHE 586 ARG 587 SER 588 TRP 589 GLY 590 ARG 591 VAL 592 GLY 593 THR 594 VAL 595 ILE 596 GLY 597 SER 598 ASN 599 LYS 600 LEU 601 GLU 602 GLN 603 MET 604 PRO 605 SER 606 LYS 607 GLU 608 ASP 609 ALA 610 ILE 611 GLU 612 HIS 613 PHE 614 MET 615 LYS 616 LEU 617 TYR 618 GLU 619 GLU 620 LYS 621 THR 622 GLY 623 ASN 624 ALA 625 TRP 626 HIS 627 SER 628 LYS 629 ASN 630 PHE 631 THR 632 LYS 633 TYR 634 PRO 635 LYS 636 LYS 637 PHE 638 TYR 639 PRO 640 LEU 641 GLU 642 ILE 643 ASP 644 LYS 662 SER 663 LYS 664 LEU 665 PRO 666 LYS 667 PRO 668 VAL 669 GLN 670 ASP 671 LEU 672 ILE 673 LYS 674 MET 675 ILE 676 PHE 677 ASP 678 VAL 679 GLU 680 SER 681 MET 682 LYS 683 LYS 684 ALA 685 MET 686 VAL 687 GLU 688 TYR 689 GLU 690 ILE 691 ASP 692 LEU 693 GLN 694 LYS 695 MET 696 PRO 697 LEU 698 GLY 699 LYS 700 LEU 701 SER 702 LYS 703 ARG 704 GLN 705 ILE 706 GLN 707 ALA 708 ALA 709 TYR 710 SER 711 ILE 712 LEU 713 SER 714 GLU 715 VAL 716 GLN 717 GLN 718 ALA 719 VAL 720 SER 721 GLN 722 GLY 723 SER 724 SER 725 ASP 726 SER 727 GLN 728 ILE 729 LEU 730 ASP 731 LEU 732 SER 733 ASN 734 ARG 735 PHE 736 TYR 737 THR 738 LEU 739 ILE 740 PRO 741 HIS 742 ASP 743 PHE 744 GLY 745 MET 746 LYS 747 LYS 748 PRO 749 PRO 750 LEU 751 LEU 752 ASN 753 ASN 754 ALA 755 ASP 756 SER 757 VAL 758 GLN 759 ALA 760 LYS 761 VAL 762 GLU 763 MET 764 LEU 765 ASP 766 ASN 767 LEU 768 LEU 769 ASP 770 ILE 771 GLU 772 VAL 773 ALA 774 TYR 775 SER 776 LEU 777 LEU 778 ARG 779 GLY 780 GLY 781 SER 782 ASP 783 ASP 784 SER 785 SER 786 LYS 787 ASP 788 PRO 789 ILE 790 ASP 791 VAL 792 ASN 793 TYR 794 GLU 795 LYS 796 LEU 797 LYS 798 THR 799 ASP 800 ILE 801 LYS 802 VAL 803 VAL 804 ASP 805 ARG 806 ASP 807 SER 808 GLU 809 GLU 810 ALA 811 GLU 812 ILE 813 ILE 814 ARG 815 LYS 816 TYR 817 VAL 818 LYS 819 ASN 820 THR 821 HIS 822 ALA 823 THR 824 THR 825 HIS 826 ASN 827 ALA 828 TYR 829 ASP 830 LEU 831 GLU 832 VAL 833 ILE 834 ASP 835 ILE 836 PHE 837 LYS 838 ILE 839 GLU 840 ARG 841 GLU 842 GLY 843 GLU 844 CYS 845 GLN 846 ARG 847 TYR 848 LYS 849 PRO 850 PHE 851 LYS 852 GLN 853 LEU 854 HIS 855 ASN 856 ARG 857 ARG 858 LEU 859 LEU 860 TRP 861 HIS 862 GLY 863 SER 864 ARG 865 THR 866 THR 867 ASN 868 PHE 869 ALA 870 GLY 871 ILE 872 LEU 873 SER 874 GLN 875 GLY 876 LEU 877 ARG 878 ILE 879 ALA 880 PRO 881 PRO 882 GLU 883 ALA 884 PRO 885 VAL 886 THR 887 GLY 888 TYR 889 MET 890 PHE 891 GLY 892 LYS 893 GLY 894 ILE 895 TYR 896 PHE 897 ALA 898 ASP 899 MET 900 VAL 901 SER 902 LYS 903 SER 904 ALA 905 ASN 906 TYR 907 CYS 908 HIS 909 THR 910 SER 911 GLN 912 GLY 913 ASP 914 PRO 915 ILE 916 GLY 917 LEU 918 ILE 919 LEU 920 LEU 921 GLY 922 GLU 923 VAL 924 ALA 925 LEU 926 GLY 927 ASN 928 MET 929 TYR 930 GLU 931 LEU 932 LYS 933 HIS 934 ALA 935 SER 936 HIS 937 ILE 938 SER 939 LYS 940 LEU 941 PRO 942 LYS 943 GLY 944 LYS 945 HIS 946 SER 947 VAL 948 LYS 949 GLY 950 LEU 951 GLY 952 LYS 953 THR 954 THR 955 PRO 956 ASP 957 PRO 958 SER 959 ALA 960 ASN 961 ILE 962 SER 963 LEU 964 ASP 965 GLY 966 VAL 967 ASP 968 VAL 969 PRO 970 LEU 971 GLY 972 THR 973 GLY 974 ILE 975 SER 976 SER 977 GLY 978 VAL 979 ASN 980 ASP 981 THR 982 SER 983 LEU 984 LEU 985 TYR 986 ASN 987 GLU 988 TYR 989 ILE 990 VAL 991 TYR 992 ASP 993 ILE 994 ALA 995 GLN 996 VAL 997 ASN 998 LEU 999 LYS 1000 TYR 1001 LEU 1002 LEU 1003 LYS 1004 LEU 1005 LYS 1006 PHE 1007 ASN 1008 PHE 1009 LYS 1010 THR 1011

Other macromolecules

Unit 5	DG 1 DC 2 DC 3 DT 4 DA 5 DC 6 DC 7 DG 8 DG 9 DT 10 DT 11 DC 12 DG 13 DC 14 DG 15 DA 16 DA 17 DC 18 DC 19 DG 20 DG 21 DT 22 DA 23 DG 24 DG 25 DC 26
Unit 6	DG 1 DC 2 DC 3 DT 4 DA 5 DC 6 DC 7 DG 8 DG 9 DT 10 DT 11 DC 12 DG 13 DC 14 DG 15 DA 16 DA 17 DC 18 DC 19 DG 20 DG 21 DT 22 DA 23 DG 24 DG 25 DC 26

Ligands

Unit 7	ZN 401 ZN 402
Unit 8	2UT 1101
Unit 9	ZN 401 ZN 402