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Sequence, Chains, Asymmetric and Biological Units

Title TY3 REVERSE TRANSCRIPTASE BOUND TO DNA/RNA
Keywords PROTEIN-DNA/RNA, REVERSE TRANSCRIPTION, DNA/RNA BINDING, TRA HYDROLASE-RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OL8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   REVERSE TRANSCRIPTASE/RIBONUCLEASE H  A 390 2964 40
2  Protein   REVERSE TRANSCRIPTASE/RIBONUCLEASE H  B 452 3507 40
3  RNA    C 17 378 0
4  Other macromolecule    D 15 294 0
5  RNA    G 17 378 0
6  Other macromolecule    H 16 310 0
7  Protein   REVERSE TRANSCRIPTASE/RIBONUCLEASE H  F 427 3270 40
8  Protein   REVERSE TRANSCRIPTASE/RIBONUCLEASE H  E 381 2833 40
9  Ligand   REVERSE TRANSCRIPTASE/RIBONUCLEASE H  B 2 0 10
10 Water     1 0 1
total       1718 13934 171
Proteins
Unit 1 PRO22 VAL23 TRP24 LEU25 GLN26 GLN27 LYS28 TYR29 ARG30 GLU31 ILE32 ILE33 ARG34 ASN35 ASP36 LEU37 PRO38 PRO39 PRO48 VAL49 LYS50 HIS51 ASP52 ILE53 GLU54 ILE55 LYS56 PRO57 GLY58 ALA59 ARG60 LEU61 PRO62 ARG63 LEU64 GLN65 PRO66 TYR67 HIS68 VAL69 THR70 GLU71 LYS72 ASN73 GLU74 GLN75 GLU76 ILE77 ASN78 LYS79 ILE80 VAL81 GLN82 LYS83 LEU84 LEU85 ASP86 ASN87 LYS88 PHE89 ILE90 VAL91 PRO92 SER93 LYS94 SER95 PRO96 CYS97 SER98 SER99 PRO100 VAL101 VAL102 LEU103 VAL104 PRO105 LYS106 THR110 PHE111 ARG112 LEU113 CYS114 VAL115 ASP116 TYR117 ARG118 THR119 LEU120 ASN121 LYS122 ALA123 THR124 ILE125 SER126 ASP127 PRO128 PHE129 PRO130 LEU131 PRO132 ARG133 ILE134 ASP135 ASN136 LEU137 LEU138 SER139 ARG140 ILE141 GLY142 ASN143 ALA144 GLN145 ILE146 PHE147 THR148 THR149 LEU150 ASP151 LEU152 HIS153 SER154 GLY155 TYR156 HIS157 GLN158 ILE159 PRO160 MSE161 GLU162 PRO163 LYS164 ASP165 ARG166 TYR167 LYS168 THR169 ALA170 PHE171 VAL172 THR173 PRO174 SER175 GLY176 LYS177 TYR178 GLU179 TYR180 THR181 VAL182 MSE183 PRO184 PHE185 GLY186 LEU187 VAL188 ASN189 ALA190 PRO191 SER192 THR193 PHE194 ALA195 ARG196 TYR197 MSE198 ALA199 ASP200 THR201 PHE202 ARG203 ASP204 LEU205 ARG206 PHE207 VAL208 ASN209 VAL210 TYR211 LEU212 ASP213 ASP214 ILE215 LEU216 ILE217 PHE218 SER219 GLU220 SER221 PRO222 GLU223 GLU224 HIS225 TRP226 LYS227 HIS228 LEU229 ASP230 THR231 VAL232 LEU233 GLU234 ARG235 LEU236 LYS237 ASN238 GLU239 ASN240 LEU241 ILE242 VAL243 LYS244 LYS245 LYS246 LYS247 CYS248 LYS249 PHE250 GLU253 GLU254 THR255 GLU256 PHE257 LEU258 GLY259 TYR260 SER261 ILE262 GLY263 ILE264 GLN265 LYS266 ILE267 ALA268 PRO269 LEU270 GLN271 HIS272 LYS273 CYS274 ALA275 ALA276 ILE277 ARG278 ASP279 PHE280 PRO281 THR282 PRO283 LYS284 THR285 VAL286 LYS287 GLN288 ALA289 GLN290 ARG291 PHE292 LEU293 GLY294 MSE295 ILE296 ASN297 TYR298 TYR299 ARG300 ARG301 PHE302 ILE303 PRO304 ASN305 CYS306 SER307 LYS308 ILE309 ALA310 GLN311 PRO312 ILE313 THR324 GLU325 LYS326 GLN327 ASP328 LYS329 ALA330 ILE331 ASP332 LYS333 LEU334 LYS335 ASP336 ALA337 PRO346 PHE347 ASN348 ASN349 LYS350 ALA351 ASN352 TYR353 ARG354 LEU355 THR356 THR357 ASP358 ALA359 SER360 LYS361 ASP362 GLY363 ILE364 GLY365 ALA366 VAL367 LEU368 GLU369 GLU370 VAL371 ASP372 ASN373 LYS374 ASN375 LYS376 LEU377 VAL378 GLY379 VAL380 VAL381 GLY382 TYR383 PHE384 SER385 LYS386 SER387 LEU388 GLU389 TYR395 PRO396 ALA397 GLY398 GLU399 LEU400 GLU401 LEU402 LEU403 GLY404 ILE405 ILE406 LYS407 ALA408 LEU409 HIS410 HIS411 PHE412 ARG413 TYR414 MSE415 LEU416 HIS417 GLY418 LYS419 HIS420 PHE421 THR422 LEU423 ARG424 THR425 ASN426 HIS427 ALA440 ARG441 ARG442 VAL443 GLN444 ARG445 TRP446 LEU447 ASP448 ASP449 LEU450 ALA451 THR452 TYR453 ASP454 PHE455 THR456 LEU457 GLU458 TYR459
Unit 2 LYS15 ASP16 THR17 PHE18 CYS19 THR20 LEU21 PRO22 VAL23 TRP24 LEU25 GLN26 GLN27 LYS28 TYR29 ARG30 GLU31 ILE32 ILE33 ARG34 ASN35 ASP36 LEU37 PRO38 PRO39 ARG40 PRO41 ALA42 PRO48 VAL49 LYS50 HIS51 ASP52 ILE53 GLU54 ILE55 LYS56 PRO57 GLY58 ALA59 ARG60 LEU61 PRO62 ARG63 LEU64 GLN65 PRO66 TYR67 HIS68 VAL69 THR70 GLU71 LYS72 ASN73 GLU74 GLN75 GLU76 ILE77 ASN78 LYS79 ILE80 VAL81 GLN82 LYS83 LEU84 LEU85 ASP86 ASN87 LYS88 PHE89 ILE90 VAL91 PRO92 SER93 LYS94 SER95 PRO96 CYS97 SER98 SER99 PRO100 VAL101 VAL102 LEU103 VAL104 PRO105 LYS106 LYS107 ASP108 GLY109 THR110 PHE111 ARG112 LEU113 CYS114 VAL115 ASP116 TYR117 ARG118 THR119 LEU120 ASN121 LYS122 ALA123 THR124 ILE125 SER126 ASP127 PRO128 PHE129 PRO130 LEU131 PRO132 ARG133 ILE134 ASP135 ASN136 LEU137 LEU138 SER139 ARG140 ILE141 GLY142 ASN143 ALA144 GLN145 ILE146 PHE147 THR148 THR149 LEU150 ASP151 LEU152 HIS153 SER154 GLY155 TYR156 HIS157 GLN158 ILE159 PRO160 MSE161 GLU162 PRO163 LYS164 ASP165 ARG166 TYR167 LYS168 THR169 ALA170 PHE171 VAL172 THR173 PRO174 SER175 GLY176 LYS177 TYR178 GLU179 TYR180 THR181 VAL182 MSE183 PRO184 PHE185 GLY186 LEU187 VAL188 ASN189 ALA190 PRO191 SER192 THR193 PHE194 ALA195 ARG196 TYR197 MSE198 ALA199 ASP200 THR201 PHE202 ARG203 ASP204 LEU205 ARG206 PHE207 VAL208 ASN209 VAL210 TYR211 LEU212 ASP213 ASP214 ILE215 LEU216 ILE217 PHE218 SER219 GLU220 SER221 PRO222 GLU223 GLU224 HIS225 TRP226 LYS227 HIS228 LEU229 ASP230 THR231 VAL232 LEU233 GLU234 ARG235 LEU236 LYS237 ASN238 GLU239 ASN240 LEU241 ILE242 VAL243 LYS244 LYS245 LYS246 LYS247 CYS248 LYS249 PHE250 ALA251 SER252 GLU253 GLU254 THR255 GLU256 PHE257 LEU258 GLY259 TYR260 SER261 ILE262 GLY263 ILE264 GLN265 LYS266 ILE267 ALA268 PRO269 LEU270 GLN271 HIS272 LYS273 CYS274 ALA275 ALA276 ILE277 ARG278 ASP279 PHE280 PRO281 THR282 PRO283 LYS284 THR285 VAL286 LYS287 GLN288 ALA289 GLN290 ARG291 PHE292 LEU293 GLY294 MSE295 ILE296 ASN297 TYR298 TYR299 ARG300 ARG301 PHE302 ILE303 PRO304 ASN305 CYS306 SER307 LYS308 ILE309 ALA310 GLN311 PRO312 ILE313 GLN314 LEU315 PHE316 ILE317 CYS318 ASP319 LYS320 SER321 GLN322 TRP323 THR324 GLU325 LYS326 GLN327 ASP328 LYS329 ALA330 ILE331 ASP332 LYS333 LEU334 LYS335 ASP336 ALA337 LEU338 CYS339 ASN340 SER341 PRO342 VAL343 LEU344 VAL345 PRO346 PHE347 ASN348 ASN349 LYS350 ALA351 ASN352 TYR353 ARG354 LEU355 THR356 THR357 ASP358 ALA359 SER360 LYS361 ASP362 GLY363 ILE364 GLY365 ALA366 VAL367 LEU368 GLU369 GLU370 VAL371 ASP372 ASN373 LYS374 ASN375 LYS376 LEU377 VAL378 GLY379 VAL380 VAL381 GLY382 TYR383 PHE384 SER385 LYS386 SER387 LEU388 GLU389 TYR395 PRO396 ALA397 GLY398 GLU399 LEU400 GLU401 LEU402 LEU403 GLY404 ILE405 ILE406 LYS407 ALA408 LEU409 HIS410 HIS411 PHE412 ARG413 TYR414 MSE415 LEU416 HIS417 GLY418 LYS419 HIS420 PHE421 THR422 LEU423 ARG424 THR425 ASN426 HIS427 ILE428 SER429 LEU430 LEU431 SER432 LEU433 GLN434 ASN435 LYS436 ASN437 GLU438 PRO439 ALA440 ARG441 ARG442 VAL443 GLN444 ARG445 TRP446 LEU447 ASP448 ASP449 LEU450 ALA451 THR452 TYR453 ASP454 PHE455 THR456 LEU457 GLU458 TYR459 LEU460 ALA461 GLY462 PRO463 LYS464 ASN465 VAL466 VAL467 ALA468 ASP469 ALA470 ILE471 SER472 ARG473 ALA474 VAL475 TYR476
Unit 7 LYS15 ASP16 THR17 PHE18 CYS19 THR20 LEU21 PRO22 VAL23 TRP24 LEU25 GLN26 GLN27 LYS28 TYR29 ARG30 GLU31 ILE32 ILE33 ARG34 ASN35 ASP36 LEU37 PRO38 PRO39 ARG40 PRO41 ALA42 PRO48 VAL49 LYS50 HIS51 ASP52 ILE53 GLU54 ILE55 LYS56 PRO57 GLY58 ALA59 ARG60 LEU61 PRO62 ARG63 LEU64 GLN65 PRO66 TYR67 HIS68 VAL69 THR70 GLU71 LYS72 ASN73 GLU74 GLN75 GLU76 ILE77 ASN78 LYS79 ILE80 VAL81 GLN82 LYS83 LEU84 LEU85 ASP86 ASN87 LYS88 PHE89 ILE90 VAL91 PRO92 SER93 LYS94 SER95 PRO96 CYS97 SER98 SER99 PRO100 VAL101 VAL102 LEU103 VAL104 PRO105 LYS106 LYS107 ASP108 GLY109 THR110 PHE111 ARG112 LEU113 CYS114 VAL115 ASP116 TYR117 ARG118 THR119 LEU120 ASN121 LYS122 ALA123 THR124 ILE125 SER126 ASP127 PRO128 PHE129 PRO130 LEU131 PRO132 ARG133 ILE134 ASP135 ASN136 LEU137 LEU138 SER139 ARG140 ILE141 GLY142 ASN143 ALA144 GLN145 ILE146 PHE147 THR148 THR149 LEU150 ASP151 LEU152 HIS153 SER154 GLY155 TYR156 HIS157 GLN158 ILE159 PRO160 MSE161 GLU162 PRO163 LYS164 ASP165 ARG166 TYR167 LYS168 THR169 ALA170 PHE171 VAL172 THR173 PRO174 SER175 GLY176 LYS177 TYR178 GLU179 TYR180 THR181 VAL182 MSE183 PRO184 PHE185 GLY186 LEU187 VAL188 ASN189 ALA190 PRO191 SER192 THR193 PHE194 ALA195 ARG196 TYR197 MSE198 ALA199 ASP200 THR201 PHE202 ARG203 ASP204 LEU205 ARG206 PHE207 VAL208 ASN209 VAL210 TYR211 LEU212 ASP213 ASP214 ILE215 LEU216 ILE217 PHE218 SER219 GLU220 SER221 PRO222 GLU223 GLU224 HIS225 TRP226 LYS227 HIS228 LEU229 ASP230 THR231 VAL232 LEU233 GLU234 ARG235 LEU236 LYS237 ASN238 GLU239 ASN240 LEU241 ILE242 VAL243 LYS244 LYS245 LYS246 LYS247 CYS248 LYS249 PHE250 ALA251 SER252 GLU253 GLU254 THR255 GLU256 PHE257 LEU258 GLY259 TYR260 SER261 ILE262 GLY263 ILE264 GLN265 LYS266 ILE267 ALA268 PRO269 LEU270 GLN271 HIS272 LYS273 CYS274 ALA275 ALA276 ILE277 ARG278 ASP279 PHE280 PRO281 THR282 LYS287 GLN288 ALA289 GLN290 ARG291 PHE292 LEU293 GLY294 MSE295 ILE296 ASN297 TYR298 TYR299 ARG300 ARG301 PHE302 ILE303 PRO304 ASN305 CYS306 SER307 LYS308 ILE309 ALA310 GLN311 PRO312 THR324 GLU325 LYS326 GLN327 ASP328 LYS329 ALA330 ILE331 ASP332 LYS333 LEU334 LYS335 ASP336 ALA337 LEU338 CYS339 ASN340 SER341 PRO342 VAL343 LEU344 VAL345 PRO346 PHE347 ASN348 ASN349 LYS350 ALA351 ASN352 TYR353 ARG354 LEU355 THR356 THR357 ASP358 ALA359 SER360 LYS361 ASP362 GLY363 ILE364 GLY365 ALA366 VAL367 LEU368 GLU369 GLU370 VAL371 ASP372 ASN373 LYS374 ASN375 LYS376 LEU377 VAL378 GLY379 VAL380 VAL381 GLY382 TYR383 PHE384 SER385 LYS386 SER387 TYR395 PRO396 ALA397 GLY398 GLU399 LEU400 GLU401 LEU402 LEU403 GLY404 ILE405 ILE406 LYS407 ALA408 LEU409 HIS410 HIS411 PHE412 ARG413 TYR414 MSE415 LEU416 HIS417 GLY418 LYS419 HIS420 PHE421 THR422 LEU423 ARG424 THR425 ASN426 HIS427 ILE428 SER429 LEU430 LEU431 SER432 LEU433 GLN434 ASN435 LYS436 ASN437 GLU438 PRO439 ALA440 ARG441 ARG442 VAL443 GLN444 ARG445 TRP446 LEU447 ASP448 ASP449 LEU450 ALA451 THR452 TYR453 ASP454 PHE455 THR456 LEU457 GLU458 TYR459 LEU460 VAL466 VAL467 ALA468 ASP469 ALA470 ILE471 SER472 ARG473
Unit 8 PRO22 VAL23 TRP24 LEU25 GLN26 GLN27 LYS28 TYR29 ARG30 GLU31 ILE32 ILE33 ARG34 ASN35 ASP36 LEU37 PRO38 PRO39 ARG40 PRO48 VAL49 LYS50 HIS51 ASP52 ILE53 GLU54 ILE55 LYS56 PRO57 GLY58 ALA59 ARG60 LEU61 PRO62 ARG63 LEU64 GLN65 PRO66 TYR67 HIS68 VAL69 THR70 GLU71 LYS72 ASN73 GLU74 GLN75 GLU76 ILE77 ASN78 LYS79 ILE80 VAL81 GLN82 LYS83 LEU84 LEU85 ASP86 ASN87 LYS88 PHE89 ILE90 VAL91 PRO92 SER93 LYS94 SER95 PRO96 CYS97 SER98 SER99 PRO100 VAL101 VAL102 LEU103 VAL104 PRO105 GLY109 THR110 PHE111 ARG112 LEU113 CYS114 VAL115 ASP116 TYR117 ARG118 THR119 LEU120 ASN121 LYS122 ALA123 THR124 ILE125 SER126 ASP127 PRO128 PHE129 PRO130 LEU131 PRO132 ARG133 ILE134 ASP135 ASN136 LEU137 LEU138 SER139 ARG140 ILE141 GLY142 ASN143 ALA144 GLN145 ILE146 PHE147 THR148 THR149 LEU150 ASP151 LEU152 HIS153 SER154 GLY155 TYR156 HIS157 GLN158 ILE159 PRO160 MSE161 GLU162 PRO163 LYS164 ASP165 ARG166 TYR167 LYS168 THR169 ALA170 PHE171 VAL172 THR173 PRO174 SER175 GLY176 LYS177 TYR178 GLU179 TYR180 THR181 VAL182 MSE183 PRO184 PHE185 GLY186 LEU187 VAL188 ASN189 ALA190 PRO191 SER192 THR193 PHE194 ALA195 ARG196 TYR197 MSE198 ALA199 ASP200 THR201 PHE202 ARG203 ASP204 LEU205 ARG206 PHE207 VAL208 ASN209 VAL210 TYR211 LEU212 ASP213 ASP214 ILE215 LEU216 ILE217 PHE218 SER219 GLU220 SER221 PRO222 GLU223 GLU224 HIS225 TRP226 LYS227 HIS228 LEU229 ASP230 THR231 VAL232 LEU233 GLU234 ARG235 LEU236 LYS237 ASN238 GLU239 ASN240 LEU241 ILE242 VAL243 LYS244 LYS245 LYS246 LYS247 CYS248 LYS249 PHE250 ALA251 SER252 GLU253 GLU254 THR255 GLU256 PHE257 LEU258 GLY259 TYR260 SER261 ILE262 GLY263 ILE264 GLN265 LYS266 ILE267 ALA268 PRO269 HIS272 LYS273 CYS274 ALA275 ALA276 ILE277 ARG278 ASP279 PHE280 PRO281 THR282 PRO283 LYS284 THR285 VAL286 LYS287 GLN288 ALA289 GLN290 ARG291 PHE292 LEU293 GLY294 MSE295 ILE296 ASN297 TYR298 TYR299 ARG300 ARG301 PHE302 ILE303 PRO304 ASN305 CYS306 SER307 LYS308 ILE309 ALA310 GLN311 PRO312 ILE313 THR324 GLU325 LYS326 GLN327 ASP328 LYS329 ALA330 ILE331 ASP332 LYS333 LEU334 LYS335 SER341 PRO342 VAL343 LEU344 VAL345 PRO346 PHE347 ASN352 TYR353 ARG354 LEU355 THR356 THR357 ASP358 ALA359 SER360 LYS361 ASP362 GLY363 ILE364 GLY365 ALA366 VAL367 LEU368 GLU369 VAL381 GLY382 TYR383 PHE384 SER385 LYS386 SER387 LEU388 GLU389 SER390 ALA391 GLN392 GLY398 GLU399 LEU400 GLU401 LEU402 LEU403 GLY404 ILE405 ILE406 LYS407 ALA408 LEU409 HIS410 HIS411 PHE412 ARG413 TYR414 MSE415 LEU416 HIS417 GLY418 LYS419 HIS420 PHE421 THR422 LEU423 ARG424 THR425 ASN426 HIS427 ILE428 GLU438 PRO439 ALA440 ARG441 ARG442 VAL443 GLN444 ARG445 TRP446 LEU447 ASP448 ASP449 LEU450 ALA451 THR452 TYR453 ASP454 PHE455 THR456 LEU457 GLU458
Nucleic acids
Unit 3 U2 G3 A4 G5 A6 G7 A8 G9 A10 G11 G12 A13 A14 G15 A16 U17 G18
Unit 5 U2 G3 A4 G5 A6 G7 A8 G9 A10 G11 G12 A13 A14 G15 A16 U17 G18
Other macromolecules
Unit 4 DA33 DT34 DC35 DT36 DT37 DC38 DC39 DT40 DC41 DT42 DC43 DT44 DC45 DT46 DC47
Unit 6 DC32 DA33 DT34 DC35 DT36 DT37 DC38 DC39 DT40 DC41 DT42 DC43 DT44 DC45 DT46 DC47
Ligands
Unit 9 SO4501 SO4502
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany