4OGL - Sequence, Chains, Asymmetric and Biological Units

• Title: X-RAY STRUCTURE URIDINE PHOSPHORYLASE FROM VIBRIO CHOLERAE I WITH THYMINE AT 1.25 A RESOLUTION
• Keywords: ROSSMANN FOLD, TRANSFERASE, NUCLEOSIDE, PHOSPHATE ION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4OGL	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	URIDINE PHOSPHORYLASE	A	247	1849	0
2	Protein	URIDINE PHOSPHORYLASE	B	251	1880	0
3	Protein	URIDINE PHOSPHORYLASE	C	251	1879	0
4	Protein	URIDINE PHOSPHORYLASE	D	251	1879	0
5	Protein	URIDINE PHOSPHORYLASE	E	251	1879	0
6	Protein	URIDINE PHOSPHORYLASE	F	251	1877	0
7	Ligand	URIDINE PHOSPHORYLASE	A	4	0	20
8	Ligand	URIDINE PHOSPHORYLASE	B	3	0	21
9	Ligand	URIDINE PHOSPHORYLASE	C	6	0	28
10	Ligand	URIDINE PHOSPHORYLASE	D	3	0	21
11	Ligand	URIDINE PHOSPHORYLASE	E	5	0	24
12	Ligand	URIDINE PHOSPHORYLASE	F	4	0	23
13	Water			2169	0	2169
total				3696	11243	2306

Proteins

Unit 1	LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252 LYS 253
Unit 2	LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 ASP 229 HIS 230 ALA 231 THR 232 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252 LYS 253
Unit 3	LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 ASP 229 HIS 230 ALA 231 THR 232 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252 LYS 253
Unit 4	LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 ASP 229 HIS 230 ALA 231 THR 232 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252 LYS 253
Unit 5	LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 ASP 229 HIS 230 ALA 231 THR 232 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252 LYS 253
Unit 6	THR 2 LYS 3 THR 4 VAL 5 PHE 6 HIS 7 LEU 8 GLY 9 VAL 10 THR 11 GLU 12 ALA 13 ASP 14 LEU 15 ASN 16 GLY 17 ALA 18 THR 19 LEU 20 ALA 21 ILE 22 ILE 23 PRO 24 GLY 25 ASP 26 PRO 27 ALA 28 ARG 29 VAL 30 GLN 31 LYS 32 ILE 33 ALA 34 GLU 35 LEU 36 MET 37 ASP 38 ASN 39 PRO 40 VAL 41 PHE 42 LEU 43 ALA 44 SER 45 HIS 46 ARG 47 GLU 48 TYR 49 THR 50 VAL 51 TYR 52 ARG 53 ALA 54 GLU 55 LEU 56 ASP 57 GLY 58 GLN 59 SER 60 VAL 61 VAL 62 VAL 63 CYS 64 SER 65 THR 66 GLY 67 ILE 68 GLY 69 GLY 70 PRO 71 SER 72 THR 73 SER 74 ILE 75 ALA 76 VAL 77 GLU 78 GLU 79 LEU 80 ALA 81 GLN 82 LEU 83 GLY 84 VAL 85 ARG 86 THR 87 PHE 88 LEU 89 ARG 90 VAL 91 GLY 92 THR 93 THR 94 GLY 95 ALA 96 ILE 97 GLN 98 PRO 99 HIS 100 VAL 101 ASN 102 VAL 103 GLY 104 ASP 105 MET 106 ILE 107 VAL 108 THR 109 THR 110 GLY 111 SER 112 VAL 113 ARG 114 LEU 115 ASP 116 GLY 117 ALA 118 SER 119 LEU 120 HIS 121 PHE 122 ALA 123 PRO 124 MET 125 GLU 126 PHE 127 PRO 128 ALA 129 VAL 130 PRO 131 ASP 132 PHE 133 ASP 134 VAL 135 ALA 136 THR 137 ALA 138 MET 139 LYS 140 ALA 141 ALA 142 ALA 143 GLN 144 GLU 145 SER 146 GLY 147 ALA 148 THR 149 VAL 150 HIS 151 MET 152 GLY 153 VAL 154 THR 155 ALA 156 SER 157 SER 158 ASP 159 THR 160 PHE 161 TYR 162 PRO 163 GLY 164 GLN 165 GLU 166 ARG 167 TYR 168 ASP 169 THR 170 PHE 171 THR 172 GLY 173 ARG 174 VAL 175 VAL 176 ARG 177 ARG 178 PHE 179 GLN 180 GLY 181 SER 182 MET 183 LYS 184 GLU 185 TRP 186 GLN 187 ASP 188 MET 189 GLY 190 VAL 191 LEU 192 ASN 193 PHE 194 GLU 195 MET 196 GLU 197 SER 198 ALA 199 THR 200 LEU 201 LEU 202 THR 203 MET 204 CYS 205 ALA 206 SER 207 SER 208 GLY 209 LEU 210 LYS 211 ALA 212 GLY 213 CYS 214 VAL 215 ALA 216 GLY 217 VAL 218 ILE 219 ILE 220 ASN 221 ARG 222 THR 223 GLN 224 LYS 225 GLU 226 ILE 227 PRO 228 ASP 229 HIS 230 ALA 231 THR 232 LEU 233 LYS 234 GLU 235 THR 236 GLU 237 ALA 238 ARG 239 SER 240 ILE 241 LYS 242 VAL 243 VAL 244 VAL 245 GLU 246 ALA 247 ALA 248 ARG 249 LYS 250 MET 251 LEU 252

Ligands

Unit 7	TDR 301 EDO 302 GOL 303 NA 304
Unit 8	TDR 301 EDO 302 TRS 303
Unit 9	TDR 301 EDO 302 EDO 303 EDO 304 GOL 305 NA 306
Unit 10	TDR 301 GOL 302 GOL 303
Unit 11	TDR 301 EDO 302 EDO 303 GOL 304 NA 305
Unit 12	TDR 301 EDO 302 EDO 303 GOL 304