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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF THE URIDINE PHOSPHORYLASE FROM SALMONELLA TYPHIMURIUM IN COMPLEX WITH THYMIDINE AT 2.40 A RESOLUTION
Keywords ROSSMAN FOLD, TRANSFERASE, PHOSPHAT-ION, PIRIMIDINE NUCLEOZI
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OGK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   URIDINE PHOSPHORYLASE  A 250 1877 0
2  Protein   URIDINE PHOSPHORYLASE  B 250 1877 0
3  Protein   URIDINE PHOSPHORYLASE  C 250 1877 0
4  Protein   URIDINE PHOSPHORYLASE  D 250 1877 0
5  Protein   URIDINE PHOSPHORYLASE  E 250 1877 0
6  Protein   URIDINE PHOSPHORYLASE  F 245 1837 0
7  Ligand   URIDINE PHOSPHORYLASE  A 3 0 25
8  Ligand   URIDINE PHOSPHORYLASE  B 1 0 17
9  Ligand   URIDINE PHOSPHORYLASE  C 1 0 4
10  Ligand   URIDINE PHOSPHORYLASE  D 2 0 24
11  Ligand   URIDINE PHOSPHORYLASE  E 3 0 34
12  Ligand   URIDINE PHOSPHORYLASE  F 3 0 22
13 Water     56 0 56
total       1564 11222 182
Proteins
Unit 1 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 LYS235 GLN236 THR237 GLU238 SER239 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Unit 2 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 LYS235 GLN236 THR237 GLU238 SER239 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Unit 3 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 LYS235 GLN236 THR237 GLU238 SER239 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Unit 4 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 LYS235 GLN236 THR237 GLU238 SER239 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Unit 5 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 LYS235 GLN236 THR237 GLU238 SER239 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Unit 6 SER4 ASP5 VAL6 PHE7 HIS8 LEU9 GLY10 LEU11 THR12 LYS13 ASN14 ASP15 LEU16 GLN17 GLY18 ALA19 GLN20 LEU21 ALA22 ILE23 VAL24 PRO25 GLY26 ASP27 PRO28 GLU29 ARG30 VAL31 GLU32 LYS33 ILE34 ALA35 ALA36 LEU37 MET38 ASP39 LYS40 PRO41 VAL42 LYS43 LEU44 ALA45 SER46 HIS47 ARG48 GLU49 PHE50 THR51 SER52 TRP53 ARG54 ALA55 GLU56 LEU57 ASP58 GLY59 LYS60 ALA61 VAL62 ILE63 VAL64 CYS65 SER66 THR67 GLY68 ILE69 GLY70 GLY71 PRO72 SER73 THR74 SER75 ILE76 ALA77 VAL78 GLU79 GLU80 LEU81 ALA82 GLN83 LEU84 GLY85 ILE86 ARG87 THR88 PHE89 LEU90 ARG91 ILE92 GLY93 THR94 THR95 GLY96 ALA97 ILE98 GLN99 PRO100 HIS101 ILE102 ASN103 VAL104 GLY105 ASP106 VAL107 LEU108 VAL109 THR110 THR111 ALA112 SER113 VAL114 ARG115 LEU116 ASP117 GLY118 ALA119 SER120 LEU121 HIS122 PHE123 ALA124 PRO125 MET126 GLU127 PHE128 PRO129 ALA130 VAL131 ALA132 ASP133 PHE134 ALA135 CYS136 THR137 THR138 ALA139 LEU140 VAL141 GLU142 ALA143 ALA144 LYS145 SER146 ILE147 GLY148 ALA149 THR150 THR151 HIS152 VAL153 GLY154 VAL155 THR156 ALA157 SER158 SER159 ASP160 THR161 PHE162 TYR163 PRO164 GLY165 GLN166 GLU167 ARG168 TYR169 ASP170 THR171 TYR172 SER173 GLY174 ARG175 VAL176 VAL177 ARG178 ARG179 PHE180 LYS181 GLY182 SER183 MET184 GLU185 GLU186 TRP187 GLN188 ALA189 MET190 GLY191 VAL192 MET193 ASN194 TYR195 GLU196 MET197 GLU198 SER199 ALA200 THR201 LEU202 LEU203 THR204 MET205 CYS206 ALA207 SER208 GLN209 GLY210 LEU211 ARG212 ALA213 GLY214 MET215 VAL216 ALA217 GLY218 VAL219 ILE220 VAL221 ASN222 ARG223 THR224 GLN225 GLN226 GLU227 ILE228 PRO229 ASN230 ALA231 GLU232 THR233 MET234 HIS240 ALA241 VAL242 LYS243 ILE244 VAL245 VAL246 GLU247 ALA248 ALA249 ARG250 ARG251 LEU252 LEU253
Ligands
Unit 7 THM301 IPA302 EDO303
Unit 8 THM301
Unit 9 EDO301
Unit 10 THM301 PEG302
Unit 11 THM301 PG4302 EDO303
Unit 12 THM301 K302 EDO303
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany