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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA DJ-1D WITH GLYOXYL SUBSTRATE ANALOG
Keywords GLYOXALASE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OGG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN DJ-1 HOMOLOG D  A 386 2900 22
2  Protein   PROTEIN DJ-1 HOMOLOG D  B 387 2910 22
3  Protein   PROTEIN DJ-1 HOMOLOG D  C 388 2921 22
4 Water     969 0 969
total       2130 8731 1035
Proteins
Unit 1 ASN3 SER4 ARG5 THR6 VAL7 LEU8 ILE9 LEU10 CYS11 GLY12 ASP13 TYR14 MET15 GLU16 ASP17 TYR18 GLU19 VAL20 MET21 VAL22 PRO23 PHE24 GLN25 ALA26 LEU27 GLN28 ALA29 PHE30 GLY31 ILE32 THR33 VAL34 HIS35 THR36 VAL37 CYS38 PRO39 GLY40 LYS41 LYS42 ALA43 GLY44 ASP45 SER46 CYS47 PRO48 THR49 ALA50 VAL51 HIS52 ASP53 PHE54 CYS55 GLY56 HIS57 GLN58 THR59 TYR60 PHE61 GLU62 SER63 ARG64 GLY65 HIS66 ASN67 PHE68 THR69 LEU70 ASN71 ALA72 THR73 PHE74 ASP75 GLU76 VAL77 ASP78 LEU79 SER80 LYS81 TYR82 ASP83 GLY84 LEU85 VAL86 ILE87 PRO88 GLY89 GLY90 ARG91 ALA92 PRO93 GLU94 TYR95 LEU96 ALA97 LEU98 THR99 ALA100 SER101 VAL102 VAL103 GLU104 LEU105 VAL106 LYS107 GLU108 PHE109 SER110 ARG111 SER112 GLY113 LYS114 PRO115 ILE116 ALA117 SER118 ILE119 CGV120 HIS121 GLY122 GLN123 LEU124 ILE125 LEU126 ALA127 ALA128 ALA129 ASP130 THR131 VAL132 ASN133 GLY134 ARG135 LYS136 CYS137 THR138 ALA139 TYR140 ALA141 THR142 VAL143 GLY144 PRO145 SER146 LEU147 VAL148 ALA149 ALA150 GLY151 ALA152 LYS153 TRP154 VAL155 GLU156 PRO157 ILE158 THR159 PRO160 ASP161 VAL162 CYS163 VAL164 VAL165 ASP166 GLY167 SER168 LEU169 ILE170 THR171 ALA172 ALA173 THR174 TYR175 GLU176 GLY177 HIS178 PRO179 GLU180 PHE181 ILE182 GLN183 LEU184 PHE185 VAL186 LYS187 ALA188 LEU189 GLY190 GLY191 LYS192 ILE193 THR194 GLY195 ALA196 ASN197 LYS198 ARG199 ILE200 LEU201 PHE202 LEU203 CYS204 GLY205 ASP206 TYR207 MET208 GLU209 ASP210 TYR211 GLU212 VAL213 LYS214 VAL215 PRO216 PHE217 GLN218 SER219 LEU220 GLN221 ALA222 LEU223 GLY224 CYS225 GLN226 VAL227 ASP228 ALA229 VAL230 CYS231 PRO232 GLU233 LYS234 LYS235 ALA236 GLY237 ASP238 ARG239 CYS240 PRO241 THR242 ALA243 ILE244 HIS245 ASP246 PHE247 GLU248 GLY249 ASP250 GLN251 THR252 TYR253 SER254 GLU255 LYS256 PRO257 GLY258 HIS259 THR260 PHE261 ALA262 LEU263 THR264 THR265 ASN266 PHE267 ASP268 ASP269 LEU270 VAL271 SER272 SER273 SER274 TYR275 ASP276 ALA277 LEU278 VAL279 ILE280 PRO281 GLY282 GLY283 ARG284 ALA285 PRO286 GLU287 TYR288 LEU289 ALA290 LEU291 ASN292 GLU293 HIS294 VAL295 LEU296 ASN297 ILE298 VAL299 LYS300 GLU301 PHE302 MET303 ASN304 SER305 GLU306 LYS307 PRO308 VAL309 ALA310 SER311 ILE312 CGV313 HIS314 GLY315 GLN316 GLN317 ILE318 LEU319 ALA320 ALA321 ALA322 GLY323 VAL324 LEU325 LYS326 GLY327 ARG328 LYS329 CYS330 THR331 ALA332 TYR333 PRO334 ALA335 VAL336 LYS337 LEU338 ASN339 VAL340 VAL341 LEU342 GLY343 GLY344 GLY345 THR346 TRP347 LEU348 GLU349 PRO350 ASP351 PRO352 ILE353 ASP354 ARG355 CYS356 PHE357 THR358 ASP359 GLY360 ASN361 LEU362 VAL363 THR364 GLY365 ALA366 ALA367 TRP368 PRO369 GLY370 HIS371 PRO372 GLU373 PHE374 VAL375 SER376 GLN377 LEU378 MET379 ALA380 LEU381 LEU382 GLY383 ILE384 GLN385 VAL386 SER387 PHE388
Unit 2 ASN3 SER4 ARG5 THR6 VAL7 LEU8 ILE9 LEU10 CYS11 GLY12 ASP13 TYR14 MET15 GLU16 ASP17 TYR18 GLU19 VAL20 MET21 VAL22 PRO23 PHE24 GLN25 ALA26 LEU27 GLN28 ALA29 PHE30 GLY31 ILE32 THR33 VAL34 HIS35 THR36 VAL37 CYS38 PRO39 GLY40 LYS41 LYS42 ALA43 GLY44 ASP45 SER46 CYS47 PRO48 THR49 ALA50 VAL51 HIS52 ASP53 PHE54 CYS55 GLY56 HIS57 GLN58 THR59 TYR60 PHE61 GLU62 SER63 ARG64 GLY65 HIS66 ASN67 PHE68 THR69 LEU70 ASN71 ALA72 THR73 PHE74 ASP75 GLU76 VAL77 ASP78 LEU79 SER80 LYS81 TYR82 ASP83 GLY84 LEU85 VAL86 ILE87 PRO88 GLY89 GLY90 ARG91 ALA92 PRO93 GLU94 TYR95 LEU96 ALA97 LEU98 THR99 ALA100 SER101 VAL102 VAL103 GLU104 LEU105 VAL106 LYS107 GLU108 PHE109 SER110 ARG111 SER112 GLY113 LYS114 PRO115 ILE116 ALA117 SER118 ILE119 CGV120 HIS121 GLY122 GLN123 LEU124 ILE125 LEU126 ALA127 ALA128 ALA129 ASP130 THR131 VAL132 ASN133 GLY134 ARG135 LYS136 CYS137 THR138 ALA139 TYR140 ALA141 THR142 VAL143 GLY144 PRO145 SER146 LEU147 VAL148 ALA149 ALA150 GLY151 ALA152 LYS153 TRP154 VAL155 GLU156 PRO157 ILE158 THR159 PRO160 ASP161 VAL162 CYS163 VAL164 VAL165 ASP166 GLY167 SER168 LEU169 ILE170 THR171 ALA172 ALA173 THR174 TYR175 GLU176 GLY177 HIS178 PRO179 GLU180 PHE181 ILE182 GLN183 LEU184 PHE185 VAL186 LYS187 ALA188 LEU189 GLY190 GLY191 LYS192 ILE193 THR194 GLY195 ALA196 ASN197 LYS198 ARG199 ILE200 LEU201 PHE202 LEU203 CYS204 GLY205 ASP206 TYR207 MET208 GLU209 ASP210 TYR211 GLU212 VAL213 LYS214 VAL215 PRO216 PHE217 GLN218 SER219 LEU220 GLN221 ALA222 LEU223 GLY224 CYS225 GLN226 VAL227 ASP228 ALA229 VAL230 CYS231 PRO232 GLU233 LYS234 LYS235 ALA236 GLY237 ASP238 ARG239 CYS240 PRO241 THR242 ALA243 ILE244 HIS245 ASP246 PHE247 GLU248 GLY249 ASP250 GLN251 THR252 TYR253 SER254 GLU255 LYS256 PRO257 GLY258 HIS259 THR260 PHE261 ALA262 LEU263 THR264 THR265 ASN266 PHE267 ASP268 ASP269 LEU270 VAL271 SER272 SER273 SER274 TYR275 ASP276 ALA277 LEU278 VAL279 ILE280 PRO281 GLY282 GLY283 ARG284 ALA285 PRO286 GLU287 TYR288 LEU289 ALA290 LEU291 ASN292 GLU293 HIS294 VAL295 LEU296 ASN297 ILE298 VAL299 LYS300 GLU301 PHE302 MET303 ASN304 SER305 GLU306 LYS307 PRO308 VAL309 ALA310 SER311 ILE312 CGV313 HIS314 GLY315 GLN316 GLN317 ILE318 LEU319 ALA320 ALA321 ALA322 GLY323 VAL324 LEU325 LYS326 GLY327 ARG328 LYS329 CYS330 THR331 ALA332 TYR333 PRO334 ALA335 VAL336 LYS337 LEU338 ASN339 VAL340 VAL341 LEU342 GLY343 GLY344 GLY345 THR346 TRP347 LEU348 GLU349 PRO350 ASP351 PRO352 ILE353 ASP354 ARG355 CYS356 PHE357 THR358 ASP359 GLY360 ASN361 LEU362 VAL363 THR364 GLY365 ALA366 ALA367 TRP368 PRO369 GLY370 HIS371 PRO372 GLU373 PHE374 VAL375 SER376 GLN377 LEU378 MET379 ALA380 LEU381 LEU382 GLY383 ILE384 GLN385 VAL386 SER387 PHE388 HIS389
Unit 3 ASN3 SER4 ARG5 THR6 VAL7 LEU8 ILE9 LEU10 CYS11 GLY12 ASP13 TYR14 MET15 GLU16 ASP17 TYR18 GLU19 VAL20 MET21 VAL22 PRO23 PHE24 GLN25 ALA26 LEU27 GLN28 ALA29 PHE30 GLY31 ILE32 THR33 VAL34 HIS35 THR36 VAL37 CYS38 PRO39 GLY40 LYS41 LYS42 ALA43 GLY44 ASP45 SER46 CYS47 PRO48 THR49 ALA50 VAL51 HIS52 ASP53 PHE54 CYS55 GLY56 HIS57 GLN58 THR59 TYR60 PHE61 GLU62 SER63 ARG64 GLY65 HIS66 ASN67 PHE68 THR69 LEU70 ASN71 ALA72 THR73 PHE74 ASP75 GLU76 VAL77 ASP78 LEU79 SER80 LYS81 TYR82 ASP83 GLY84 LEU85 VAL86 ILE87 PRO88 GLY89 GLY90 ARG91 ALA92 PRO93 GLU94 TYR95 LEU96 ALA97 LEU98 THR99 ALA100 SER101 VAL102 VAL103 GLU104 LEU105 VAL106 LYS107 GLU108 PHE109 SER110 ARG111 SER112 GLY113 LYS114 PRO115 ILE116 ALA117 SER118 ILE119 CGV120 HIS121 GLY122 GLN123 LEU124 ILE125 LEU126 ALA127 ALA128 ALA129 ASP130 THR131 VAL132 ASN133 GLY134 ARG135 LYS136 CYS137 THR138 ALA139 TYR140 ALA141 THR142 VAL143 GLY144 PRO145 SER146 LEU147 VAL148 ALA149 ALA150 GLY151 ALA152 LYS153 TRP154 VAL155 GLU156 PRO157 ILE158 THR159 PRO160 ASP161 VAL162 CYS163 VAL164 VAL165 ASP166 GLY167 SER168 LEU169 ILE170 THR171 ALA172 ALA173 THR174 TYR175 GLU176 GLY177 HIS178 PRO179 GLU180 PHE181 ILE182 GLN183 LEU184 PHE185 VAL186 LYS187 ALA188 LEU189 GLY190 GLY191 LYS192 ILE193 THR194 GLY195 ALA196 ASN197 LYS198 ARG199 ILE200 LEU201 PHE202 LEU203 CYS204 GLY205 ASP206 TYR207 MET208 GLU209 ASP210 TYR211 GLU212 VAL213 LYS214 VAL215 PRO216 PHE217 GLN218 SER219 LEU220 GLN221 ALA222 LEU223 GLY224 CYS225 GLN226 VAL227 ASP228 ALA229 VAL230 CYS231 PRO232 GLU233 LYS234 LYS235 ALA236 GLY237 ASP238 ARG239 CYS240 PRO241 THR242 ALA243 ILE244 HIS245 ASP246 PHE247 GLU248 GLY249 ASP250 GLN251 THR252 TYR253 SER254 GLU255 LYS256 PRO257 GLY258 HIS259 THR260 PHE261 ALA262 LEU263 THR264 THR265 ASN266 PHE267 ASP268 ASP269 LEU270 VAL271 SER272 SER273 SER274 TYR275 ASP276 ALA277 LEU278 VAL279 ILE280 PRO281 GLY282 GLY283 ARG284 ALA285 PRO286 GLU287 TYR288 LEU289 ALA290 LEU291 ASN292 GLU293 HIS294 VAL295 LEU296 ASN297 ILE298 VAL299 LYS300 GLU301 PHE302 MET303 ASN304 SER305 GLU306 LYS307 PRO308 VAL309 ALA310 SER311 ILE312 CGV313 HIS314 GLY315 GLN316 GLN317 ILE318 LEU319 ALA320 ALA321 ALA322 GLY323 VAL324 LEU325 LYS326 GLY327 ARG328 LYS329 CYS330 THR331 ALA332 TYR333 PRO334 ALA335 VAL336 LYS337 LEU338 ASN339 VAL340 VAL341 LEU342 GLY343 GLY344 GLY345 THR346 TRP347 LEU348 GLU349 PRO350 ASP351 PRO352 ILE353 ASP354 ARG355 CYS356 PHE357 THR358 ASP359 GLY360 ASN361 LEU362 VAL363 THR364 GLY365 ALA366 ALA367 TRP368 PRO369 GLY370 HIS371 PRO372 GLU373 PHE374 VAL375 SER376 GLN377 LEU378 MET379 ALA380 LEU381 LEU382 GLY383 ILE384 GLN385 VAL386 SER387 PHE388 HIS389 HIS390
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany