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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX OF SYG-1 D1-D2 AND SYG-2 D1
Keywords IMMUNOGLOBULIN SUPERFAMILY, CELL ADHESION, SYNAPTOGENESIS, P BINDING, N-LINKED GLYCOSYLATION, MEMBRANE, EXTRACELLULAR, S PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OFY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN SYG-1, ISOFORM B  A 230 1767 0
2  Protein   PROTEIN SYG-1, ISOFORM B  B 227 1752 0
3  Protein   PROTEIN SYG-1, ISOFORM B  C 227 1752 0
4  Protein   PROTEIN SYG-2  D 407 3045 0
5  Protein   PROTEIN SYG-2  E 407 3042 0
6  Protein   PROTEIN SYG-2  F 407 3057 0
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand    K 2 0 28
12  Ligand    L 2 0 28
13  Ligand   PROTEIN SYG-1, ISOFORM B  C 1 0 14
14  Ligand   PROTEIN SYG-2  D 6 0 73
15  Ligand   PROTEIN SYG-2  E 6 0 73
16  Ligand   PROTEIN SYG-2  F 6 0 73
total       1936 14415 401
Proteins
Unit 1 LEU21 GLN22 GLN23 ARG24 ILE25 VAL26 GLU27 ALA28 PRO29 LYS30 ASP31 THR32 LEU33 ALA34 ALA35 VAL36 GLY37 GLU38 THR39 ALA40 ILE41 LEU42 THR43 CYS44 ARG45 VAL46 GLU47 HIS48 GLN49 GLN50 GLY51 PRO52 VAL53 GLN54 TRP55 MET56 LYS57 ASP58 ASP59 PHE60 GLY61 LEU62 GLY63 THR64 ASP65 ARG66 ASP67 LYS68 PRO69 LEU70 PRO71 GLY72 ASN73 LYS74 ARG75 TYR76 ARG77 MET78 VAL79 GLY80 SER81 ALA82 ALA83 ASN84 GLY85 GLU86 TYR87 ASN88 LEU89 GLU90 ILE91 SER92 ASN93 VAL94 THR95 LEU96 PHE97 ASP98 ASP99 ASP100 ASP101 PHE102 ALA103 CYS104 GLN105 ILE106 SER107 GLU108 SER109 ASP110 HIS111 ALA112 LYS113 ALA114 VAL115 VAL116 SER117 SER118 LYS119 ALA120 LYS121 LEU122 THR123 VAL124 LEU125 VAL126 ARG127 PRO128 THR129 PRO130 PRO131 LYS132 ILE133 VAL134 LYS135 SER136 HIS137 HIS138 SER139 LEU140 LYS141 ALA142 ILE143 ALA144 GLY145 ASP146 PRO147 ILE148 THR149 GLN150 SER151 CYS152 LEU153 SER154 ARG155 LYS156 GLY157 LYS158 PRO159 PRO160 PRO161 THR162 ILE163 GLY164 TRP165 ALA166 ILE167 ALA168 SER169 ASP170 GLU171 HIS172 GLY173 LYS174 HIS175 ILE176 VAL177 SER178 TRP179 LEU180 GLY181 GLU182 SER183 ARG184 SER185 LYS186 PHE187 GLY188 GLU199 THR200 VAL201 ILE202 ALA203 HIS204 VAL205 ASN206 GLU207 THR208 THR209 GLN210 VAL211 GLU212 ASP221 SER222 SER223 ILE224 TYR225 SER226 ILE227 MET228 SER229 ASN230 LEU231 SER232 PHE233 ILE234 PRO235 ARG236 PRO237 GLU238 ASP239 ASP240 HIS241 LYS242 TYR243 LEU244 ILE245 CYS246 ILE247 SER248 GLN249 HIS250 MET251 THR252 PHE253 PRO254 ASN255 LYS256 ILE257 GLU258 VAL259 ASP260 SER261 VAL262 LYS263 LEU264 SER265 LEU266 ARG267 TYR268
Unit 2 LEU21 GLN22 GLN23 ARG24 ILE25 VAL26 GLU27 ALA28 PRO29 LYS30 ASP31 THR32 LEU33 ALA34 ALA35 VAL36 GLY37 GLU38 THR39 ALA40 ILE41 LEU42 THR43 CYS44 ARG45 VAL46 GLU47 HIS48 GLN49 GLN50 GLY51 PRO52 VAL53 GLN54 TRP55 MET56 LYS57 ASP58 ASP59 PHE60 GLY61 LEU62 GLY63 THR64 ASP65 ARG66 ASP67 LYS68 PRO69 LEU70 PRO71 GLY72 ASN73 LYS74 ARG75 TYR76 ARG77 MET78 VAL79 GLY80 SER81 ALA82 ALA83 ASN84 GLY85 GLU86 TYR87 ASN88 LEU89 GLU90 ILE91 SER92 ASN93 VAL94 THR95 LEU96 PHE97 ASP98 ASP99 ASP100 ASP101 PHE102 ALA103 CYS104 GLN105 ILE106 SER107 GLU108 SER109 ASP110 HIS111 ALA112 LYS113 ALA114 VAL115 VAL116 SER117 SER118 LYS119 ALA120 LYS121 LEU122 THR123 VAL124 LEU125 VAL126 ARG127 PRO128 THR129 PRO130 PRO131 LYS132 ILE133 VAL134 LYS135 SER139 LEU140 LYS141 ALA142 ILE143 ALA144 GLY145 ASP146 PRO147 ILE148 THR149 GLN150 SER151 CYS152 LEU153 SER154 ARG155 LYS156 GLY157 LYS158 PRO159 PRO160 PRO161 THR162 ILE163 GLY164 TRP165 ALA166 ILE167 ALA168 SER169 ASP170 GLU171 HIS172 GLY173 LYS174 HIS175 ILE176 VAL177 SER178 TRP179 LEU180 GLY181 GLU182 SER183 ARG184 SER185 LYS186 PHE187 GLY188 GLU199 THR200 VAL201 ILE202 ALA203 HIS204 VAL205 ASN206 GLU207 THR208 THR209 GLN210 VAL211 GLU212 ASP221 SER222 SER223 ILE224 TYR225 SER226 ILE227 MET228 SER229 ASN230 LEU231 SER232 PHE233 ILE234 PRO235 ARG236 PRO237 GLU238 ASP239 ASP240 HIS241 LYS242 TYR243 LEU244 ILE245 CYS246 ILE247 SER248 GLN249 HIS250 MET251 THR252 PHE253 PRO254 ASN255 LYS256 ILE257 GLU258 VAL259 ASP260 SER261 VAL262 LYS263 LEU264 SER265 LEU266 ARG267 TYR268
Unit 3 LEU21 GLN22 GLN23 ARG24 ILE25 VAL26 GLU27 ALA28 PRO29 LYS30 ASP31 THR32 LEU33 ALA34 ALA35 VAL36 GLY37 GLU38 THR39 ALA40 ILE41 LEU42 THR43 CYS44 ARG45 VAL46 GLU47 HIS48 GLN49 GLN50 GLY51 PRO52 VAL53 GLN54 TRP55 MET56 LYS57 ASP58 ASP59 PHE60 GLY61 LEU62 GLY63 THR64 ASP65 ARG66 ASP67 LYS68 PRO69 LEU70 PRO71 GLY72 ASN73 LYS74 ARG75 TYR76 ARG77 MET78 VAL79 GLY80 SER81 ALA82 ALA83 ASN84 GLY85 GLU86 TYR87 ASN88 LEU89 GLU90 ILE91 SER92 ASN93 VAL94 THR95 LEU96 PHE97 ASP98 ASP99 ASP100 ASP101 PHE102 ALA103 CYS104 GLN105 ILE106 SER107 GLU108 SER109 ASP110 HIS111 ALA112 LYS113 ALA114 VAL115 VAL116 SER117 SER118 LYS119 ALA120 LYS121 LEU122 THR123 VAL124 LEU125 VAL126 ARG127 PRO128 THR129 PRO130 PRO131 LYS132 ILE133 VAL134 LYS135 SER139 LEU140 LYS141 ALA142 ILE143 ALA144 GLY145 ASP146 PRO147 ILE148 THR149 GLN150 SER151 CYS152 LEU153 SER154 ARG155 LYS156 GLY157 LYS158 PRO159 PRO160 PRO161 THR162 ILE163 GLY164 TRP165 ALA166 ILE167 ALA168 SER169 ASP170 GLU171 HIS172 GLY173 LYS174 HIS175 ILE176 VAL177 SER178 TRP179 LEU180 GLY181 GLU182 SER183 ARG184 SER185 LYS186 PHE187 GLY188 GLU199 THR200 VAL201 ILE202 ALA203 HIS204 VAL205 ASN206 GLU207 THR208 THR209 GLN210 VAL211 GLU212 ASP221 SER222 SER223 ILE224 TYR225 SER226 ILE227 MET228 SER229 ASN230 LEU231 SER232 PHE233 ILE234 PRO235 ARG236 PRO237 GLU238 ASP239 ASP240 HIS241 LYS242 TYR243 LEU244 ILE245 CYS246 ILE247 SER248 GLN249 HIS250 MET251 THR252 PHE253 PRO254 ASN255 LYS256 ILE257 GLU258 VAL259 ASP260 SER261 VAL262 LYS263 LEU264 SER265 LEU266 ARG267 TYR268
Unit 4 PHE20 PHE21 LEU22 GLU23 SER24 PRO25 SER26 ASN27 LEU28 SER29 THR30 ILE31 ALA32 GLY33 GLU34 SER35 ILE36 THR37 PHE38 ARG39 CYS40 SER41 ALA42 GLU43 LYS44 SER45 PRO46 GLU47 PRO48 ILE49 VAL50 TYR51 SER52 GLN53 TRP54 LYS55 SER56 ASN57 THR58 GLY59 SER60 LEU61 LEU62 GLY63 TYR64 HIS65 GLN66 GLU67 GLY68 ILE69 LEU70 PRO71 GLY72 HIS73 GLN74 GLY75 ARG76 PHE77 SER78 TYR79 ILE80 LYS81 GLN82 ASN83 ALA84 GLU85 GLU86 LEU87 HIS88 LEU89 LYS90 ILE91 THR92 HIS93 VAL94 ASN95 LEU96 ASP97 ASP98 ASP99 GLY100 GLU101 TYR102 GLU103 CYS104 GLN105 MET106 LEU107 HIS108 PRO109 GLU110 GLU111 GLY112 PRO113 ILE114 ARG115 ALA116 LYS117 SER118 PHE119 LEU120 ASN121 ILE122 ILE123 VAL124 PRO125 PRO126 GLN127 LEU128 VAL129 TYR130 PHE131 SER132 ASN133 TYR134 GLN135 PRO136 ASN137 SER138 ILE139 ILE140 ALA141 VAL142 LYS143 GLU144 ASN145 THR146 PRO147 LEU148 ASN149 ILE150 THR151 CYS152 VAL153 VAL154 PRO155 ASN156 VAL157 LYS158 PRO159 GLU160 PRO161 GLU162 VAL163 LEU164 TRP165 TYR166 MET167 ASP168 GLY169 LYS170 VAL171 MET172 SER173 ARG174 ASP175 VAL176 LYS177 GLN178 ALA179 SER180 THR181 PRO182 HIS183 LEU184 ASN185 LYS186 THR187 PHE188 THR189 VAL190 TYR191 THR192 SER193 LEU194 VAL195 VAL196 GLN197 SER198 ASP199 ARG200 ASN201 ASP202 HIS203 GLY204 LYS205 VAL206 ILE207 THR208 CYS209 GLU210 ALA211 PHE212 GLN213 LYS214 GLU215 THR216 ASP217 ILE218 ARG219 ILE220 THR221 THR222 ASN223 THR224 THR225 LEU226 ASP227 VAL228 LEU229 PHE230 PRO231 PRO232 SER233 ASP234 PRO235 THR236 VAL237 GLU238 ILE239 LEU240 ARG241 ASN242 PRO243 SER244 ALA245 LEU246 ARG247 SER248 GLY249 ASP250 ASN251 VAL252 THR253 ILE254 ALA255 CYS256 SER257 VAL258 THR259 GLY260 GLY261 ASN262 PRO263 PRO264 PRO265 ASP266 VAL267 PHE268 TRP269 TYR270 HIS271 GLU272 ASN273 LYS274 ARG275 LEU276 GLN277 SER278 HIS279 SER280 THR281 LEU282 ASP283 THR284 ARG285 SER286 LYS287 GLU288 ILE289 LYS290 ASN291 ILE292 TYR293 SER294 PHE295 ILE296 ALA297 SER298 GLN299 ASN300 ASP301 ASN302 MET303 ALA304 GLU305 TYR306 GLU307 CYS308 ARG309 ALA310 ASN311 ASN312 SER313 ARG314 PRO318 LYS319 ARG320 LYS321 ALA322 MET323 LYS324 LEU325 GLU326 VAL327 ASN328 TYR329 PRO330 PRO331 ALA332 SER333 VAL334 GLU335 LEU336 PHE337 GLY338 GLU339 SER340 ASN341 ILE342 ARG343 TYR344 GLY345 SER346 SER347 ALA348 ASN349 ILE350 GLN351 CYS352 LYS353 SER354 LEU355 PRO356 SER357 ASN358 PRO359 ALA360 SER361 GLN362 ILE363 THR364 TRP365 ILE366 ILE367 ASN368 GLY369 ARG370 SER371 VAL372 PRO373 THR374 PRO375 THR376 GLN377 ARG378 GLU379 PHE380 VAL381 VAL382 GLU383 ASN384 GLY385 ILE386 VAL387 SER388 SER389 SER390 CYS391 VAL392 SER393 VAL394 HIS395 SER396 ASN397 GLU398 LEU399 SER400 VAL401 GLU402 ALA403 HIS404 GLN405 ILE406 ASN407 VAL408 GLU409 CYS410 MET411 ALA412 THR413 ASN414 PRO415 GLU416 GLY417 SER418 SER419 ALA420 LYS421 GLN422 HIS423 VAL424 ILE425 LYS426 ILE427 ILE428 ALA429
Unit 5 PHE20 PHE21 LEU22 GLU23 SER24 PRO25 SER26 ASN27 LEU28 SER29 THR30 ILE31 ALA32 GLY33 GLU34 SER35 ILE36 THR37 PHE38 ARG39 CYS40 SER41 ALA42 GLU43 LYS44 SER45 PRO46 GLU47 PRO48 ILE49 VAL50 TYR51 SER52 GLN53 TRP54 LYS55 SER56 ASN57 THR58 GLY59 SER60 LEU61 LEU62 GLY63 TYR64 HIS65 GLN66 GLU67 GLY68 ILE69 LEU70 PRO71 GLY72 HIS73 GLN74 GLY75 ARG76 PHE77 SER78 TYR79 ILE80 LYS81 GLN82 ASN83 ALA84 GLU85 GLU86 LEU87 HIS88 LEU89 LYS90 ILE91 THR92 HIS93 VAL94 ASN95 LEU96 ASP97 ASP98 ASP99 GLY100 GLU101 TYR102 GLU103 CYS104 GLN105 MET106 LEU107 HIS108 PRO109 GLU110 GLU111 GLY112 PRO113 ILE114 ARG115 ALA116 LYS117 SER118 PHE119 LEU120 ASN121 ILE122 ILE123 VAL124 PRO125 PRO126 GLN127 LEU128 VAL129 TYR130 PHE131 SER132 ASN133 TYR134 GLN135 PRO136 ASN137 SER138 ILE139 ILE140 ALA141 VAL142 LYS143 GLU144 ASN145 THR146 PRO147 LEU148 ASN149 ILE150 THR151 CYS152 VAL153 VAL154 PRO155 ASN156 VAL157 LYS158 PRO159 GLU160 PRO161 GLU162 VAL163 LEU164 TRP165 TYR166 MET167 ASP168 GLY169 LYS170 VAL171 MET172 SER173 ARG174 ASP175 VAL176 LYS177 GLN178 ALA179 SER180 THR181 PRO182 HIS183 LEU184 ASN185 LYS186 THR187 PHE188 THR189 VAL190 TYR191 THR192 SER193 LEU194 VAL195 VAL196 GLN197 SER198 ASP199 ARG200 ASN201 ASP202 HIS203 GLY204 LYS205 VAL206 ILE207 THR208 CYS209 GLU210 ALA211 PHE212 GLN213 LYS214 GLU215 THR216 ASP217 ILE218 ARG219 ILE220 THR221 THR222 ASN223 THR224 THR225 LEU226 ASP227 VAL228 LEU229 PHE230 PRO231 PRO232 SER233 ASP234 PRO235 THR236 VAL237 GLU238 ILE239 LEU240 ARG241 ASN242 PRO243 SER244 ALA245 LEU246 ARG247 SER248 GLY249 ASP250 ASN251 VAL252 THR253 ILE254 ALA255 CYS256 SER257 VAL258 THR259 GLY260 GLY261 ASN262 PRO263 PRO264 PRO265 ASP266 VAL267 PHE268 TRP269 TYR270 HIS271 GLU272 ASN273 LYS274 ARG275 LEU276 GLN277 SER278 HIS279 SER280 THR281 LEU282 ASP283 THR284 ARG285 SER286 LYS287 GLU288 ILE289 LYS290 ASN291 ILE292 TYR293 SER294 PHE295 ILE296 ALA297 SER298 GLN299 ASN300 ASP301 ASN302 MET303 ALA304 GLU305 TYR306 GLU307 CYS308 ARG309 ALA310 ASN311 ASN312 SER313 ARG314 PRO318 LYS319 ARG320 LYS321 ALA322 MET323 LYS324 LEU325 GLU326 VAL327 ASN328 TYR329 PRO330 PRO331 ALA332 SER333 VAL334 GLU335 LEU336 PHE337 GLY338 GLU339 SER340 ASN341 ILE342 ARG343 TYR344 GLY345 SER346 SER347 ALA348 ASN349 ILE350 GLN351 CYS352 LYS353 SER354 LEU355 PRO356 SER357 ASN358 PRO359 ALA360 SER361 GLN362 ILE363 THR364 TRP365 ILE366 ILE367 ASN368 GLY369 ARG370 SER371 VAL372 PRO373 THR374 PRO375 THR376 GLN377 ARG378 GLU379 PHE380 VAL381 VAL382 GLU383 ASN384 GLY385 ILE386 VAL387 SER388 SER389 SER390 CYS391 VAL392 SER393 VAL394 HIS395 SER396 ASN397 GLU398 LEU399 SER400 VAL401 GLU402 ALA403 HIS404 GLN405 ILE406 ASN407 VAL408 GLU409 CYS410 MET411 ALA412 THR413 ASN414 PRO415 GLU416 GLY417 SER418 SER419 ALA420 LYS421 GLN422 HIS423 VAL424 ILE425 LYS426 ILE427 ILE428 ALA429
Unit 6 PHE20 PHE21 LEU22 GLU23 SER24 PRO25 SER26 ASN27 LEU28 SER29 THR30 ILE31 ALA32 GLY33 GLU34 SER35 ILE36 THR37 PHE38 ARG39 CYS40 SER41 ALA42 GLU43 LYS44 SER45 PRO46 GLU47 PRO48 ILE49 VAL50 TYR51 SER52 GLN53 TRP54 LYS55 SER56 ASN57 THR58 GLY59 SER60 LEU61 LEU62 GLY63 TYR64 HIS65 GLN66 GLU67 GLY68 ILE69 LEU70 PRO71 GLY72 HIS73 GLN74 GLY75 ARG76 PHE77 SER78 TYR79 ILE80 LYS81 GLN82 ASN83 ALA84 GLU85 GLU86 LEU87 HIS88 LEU89 LYS90 ILE91 THR92 HIS93 VAL94 ASN95 LEU96 ASP97 ASP98 ASP99 GLY100 GLU101 TYR102 GLU103 CYS104 GLN105 MET106 LEU107 HIS108 PRO109 GLU110 GLU111 GLY112 PRO113 ILE114 ARG115 ALA116 LYS117 SER118 PHE119 LEU120 ASN121 ILE122 ILE123 VAL124 PRO125 PRO126 GLN127 LEU128 VAL129 TYR130 PHE131 SER132 ASN133 TYR134 GLN135 PRO136 ASN137 SER138 ILE139 ILE140 ALA141 VAL142 LYS143 GLU144 ASN145 THR146 PRO147 LEU148 ASN149 ILE150 THR151 CYS152 VAL153 VAL154 PRO155 ASN156 VAL157 LYS158 PRO159 GLU160 PRO161 GLU162 VAL163 LEU164 TRP165 TYR166 MET167 ASP168 GLY169 LYS170 VAL171 MET172 SER173 ARG174 ASP175 VAL176 LYS177 GLN178 ALA179 SER180 THR181 PRO182 HIS183 LEU184 ASN185 LYS186 THR187 PHE188 THR189 VAL190 TYR191 THR192 SER193 LEU194 VAL195 VAL196 GLN197 SER198 ASP199 ARG200 ASN201 ASP202 HIS203 GLY204 LYS205 VAL206 ILE207 THR208 CYS209 GLU210 ALA211 PHE212 GLN213 LYS214 GLU215 THR216 ASP217 ILE218 ARG219 ILE220 THR221 THR222 ASN223 THR224 THR225 LEU226 ASP227 VAL228 LEU229 PHE230 PRO231 PRO232 SER233 ASP234 PRO235 THR236 VAL237 GLU238 ILE239 LEU240 ARG241 ASN242 PRO243 SER244 ALA245 LEU246 ARG247 SER248 GLY249 ASP250 ASN251 VAL252 THR253 ILE254 ALA255 CYS256 SER257 VAL258 THR259 GLY260 GLY261 ASN262 PRO263 PRO264 PRO265 ASP266 VAL267 PHE268 TRP269 TYR270 HIS271 GLU272 ASN273 LYS274 ARG275 LEU276 GLN277 SER278 HIS279 SER280 THR281 LEU282 ASP283 THR284 ARG285 SER286 LYS287 GLU288 ILE289 LYS290 ASN291 ILE292 TYR293 SER294 PHE295 ILE296 ALA297 SER298 GLN299 ASN300 ASP301 ASN302 MET303 ALA304 GLU305 TYR306 GLU307 CYS308 ARG309 ALA310 ASN311 ASN312 SER313 ARG314 PRO318 LYS319 ARG320 LYS321 ALA322 MET323 LYS324 LEU325 GLU326 VAL327 ASN328 TYR329 PRO330 PRO331 ALA332 SER333 VAL334 GLU335 LEU336 PHE337 GLY338 GLU339 SER340 ASN341 ILE342 ARG343 TYR344 GLY345 SER346 SER347 ALA348 ASN349 ILE350 GLN351 CYS352 LYS353 SER354 LEU355 PRO356 SER357 ASN358 PRO359 ALA360 SER361 GLN362 ILE363 THR364 TRP365 ILE366 ILE367 ASN368 GLY369 ARG370 SER371 VAL372 PRO373 THR374 PRO375 THR376 GLN377 ARG378 GLU379 PHE380 VAL381 VAL382 GLU383 ASN384 GLY385 ILE386 VAL387 SER388 SER389 SER390 CYS391 VAL392 SER393 VAL394 HIS395 SER396 ASN397 GLU398 LEU399 SER400 VAL401 GLU402 ALA403 HIS404 GLN405 ILE406 ASN407 VAL408 GLU409 CYS410 MET411 ALA412 THR413 ASN414 PRO415 GLU416 GLY417 SER418 SER419 ALA420 LYS421 GLN422 HIS423 VAL424 ILE425 LYS426 ILE427 ILE428 ALA429
Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2
Unit 13 NAG803
Unit 14 NAG1501 NAG1502 NAG1505 NAG1506 NAG1507 EMC1508
Unit 15 NAG1501 NAG1502 NAG1505 NAG1506 NAG1507 EMC1508
Unit 16 NAG1501 NAG1502 NAG1505 NAG1506 NAG1507 EMC1508
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany