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| Title | STRUCTURAL BASIS FOR THYMINE GLYCOSYLASE ACTIVITY ON T:O6-ME MISMATCH BY METHYL-CPG BINDING DOMAIN PROTEIN 4: IMPLICATIO ROLES OF ARG468 IN MISMATCH RECOGNITION AND CATALYSIS | |
| Keywords | PROTEIN-DNA COMPLEX, MISMATCH, THYMINE GLYCOSYLASE, HYDROLAS COMPLEX | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4OFH | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | METHYL-CPG-BINDING DOMAIN PROTEIN 4 | A | 141 | 1202 | 0 |
| 2 | Other macromolecule | 12-MER DNA(T) | C | 12 | 242 | 0 |
| 3 | Other macromolecule | 12-MER DNA(O6MEG) | D | 12 | 223 | 23 |
| 4 | Ligand | METHYL-CPG-BINDING DOMAIN PROTEIN 4 | A | 1 | 0 | 1 |
| 5 | Water | 91 | 0 | 91 | ||
| total | 257 | 1667 | 115 |
| Unit 1 | TRP438 THR439 PRO440 PRO441 ARG442 SER443 PRO444 PHE445 ASN446 LEU447 VAL448 GLN449 GLU450 THR451 LEU452 PHE453 HIS454 ASP455 PRO456 TRP457 LYS458 LEU459 LEU460 ILE461 ALA462 THR463 ILE464 PHE465 LEU466 ASN467 ARG468 THR469 SER470 GLY471 LYS472 MET473 ALA474 ILE475 PRO476 VAL477 LEU478 TRP479 LYS480 PHE481 LEU482 GLU483 LYS484 TYR485 PRO486 SER487 ALA488 GLU489 VAL490 ALA491 ARG492 THR493 ALA494 ASP495 TRP496 ARG497 ASP498 VAL499 SER500 GLU501 LEU502 LEU503 LYS504 PRO505 LEU506 GLY507 LEU508 TYR509 ASP510 LEU511 ARG512 ALA513 LYS514 THR515 ILE516 VAL517 LYS518 PHE519 SER520 ASP521 GLU522 TYR523 LEU524 THR525 LYS526 GLN527 TRP528 LYS529 TYR530 PRO531 ILE532 GLU533 LEU534 HIS535 GLY536 ILE537 GLY538 LYS539 TYR540 GLY541 ASN542 ASP543 SER544 TYR545 ARG546 ILE547 PHE548 CYS549 VAL550 ASN551 GLU552 TRP553 LYS554 GLN555 VAL556 HIS557 PRO558 GLU559 ASN560 HIS561 LYS562 LEU563 ASN564 LYS565 TYR566 HIS567 ASP568 TRP569 LEU570 TRP571 GLU572 ASN573 HIS574 GLU575 LYS576 LEU577 SER578 |
| Unit 2 | DC1 DC2 DA3 DG4 DC5 DG6 DT7 DG8 DC9 DA10 DG11 DC12 |
| Unit 3 | DG1 DC2 DT3 DG4 DC5 6OG6 DC7 DG8 DC9 DT10 DG11 DG12 |
| Unit 4 | MG601 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |