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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE PENTATRICOPEPTIDE REPEAT PROTEIN PP (C256S/C430S/C449S) IN COMPLEX WITH AN 18-NT PSAJ RNA ELEME
Keywords PENTATRICOPEPTIDE REPEATS, SUPERHELICAL, RNA BINDING PROTEIN RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OE1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CHLOROPLAST PENTATRICOPEPTIDE REPEAT PROTEIN 10  A 687 5202 0
2  Protein   CHLOROPLAST PENTATRICOPEPTIDE REPEAT PROTEIN 10  B 683 5179 0
3  RNA    D 18 368 0
4  RNA    C 14 279 0
5  Ligand   CHLOROPLAST PENTATRICOPEPTIDE REPEAT PROTEIN 10  B 1 0 5
total       1403 11028 5
Proteins
Unit 1 PRO74 ASP75 ALA76 GLN77 VAL78 LEU79 VAL80 LEU81 ALA82 ILE83 SER84 SER85 HIS86 PRO87 LEU88 PRO89 THR90 LEU91 ALA92 ALA93 PHE94 LEU95 ALA96 SER97 ARG98 ARG99 ASP100 GLU101 LEU102 LEU103 ARG104 ALA105 ASP106 ILE107 THR108 SER109 LEU110 LEU111 LYS112 ALA113 LEU114 GLU115 LEU116 SER117 GLY118 HIS119 TRP120 GLU121 TRP122 ALA123 LEU124 ALA125 LEU126 LEU127 ARG128 TRP129 ALA130 GLY131 LYS132 GLU133 GLY134 ALA135 ALA136 ASP137 ALA138 SER139 ALA140 LEU141 GLU142 MET143 VAL144 VAL145 ARG146 ALA147 LEU148 GLY149 ARG150 GLU151 GLY152 GLN153 HIS154 ASP155 ALA156 VAL157 CYS158 ALA159 LEU160 LEU161 ASP162 GLU163 THR164 PRO165 LEU166 PRO167 PRO168 GLY169 SER170 ARG171 LEU172 ASP173 VAL174 ARG175 ALA176 TYR177 THR178 THR179 VAL180 LEU181 HIS182 ALA183 LEU184 SER185 ARG186 ALA187 GLY188 ARG189 TYR190 GLU191 ARG192 ALA193 LEU194 GLU195 LEU196 PHE197 ALA198 GLU199 LEU200 ARG201 ARG202 GLN203 GLY204 VAL205 ALA206 PRO207 THR208 LEU209 VAL210 THR211 TYR212 ASN213 VAL214 VAL215 LEU216 ASP217 VAL218 TYR219 GLY220 ARG221 MET222 GLY223 ARG224 SER225 TRP226 PRO227 ARG228 ILE229 VAL230 ALA231 LEU232 LEU233 ASP234 GLU235 MET236 ARG237 ALA238 ALA239 GLY240 VAL241 GLU242 PRO243 ASP244 GLY245 PHE246 THR247 ALA248 SER249 THR250 VAL251 ILE252 ALA253 ALA254 CYS255 SER256 ARG257 ASP258 GLY259 LEU260 VAL261 ASP262 GLU263 ALA264 VAL265 ALA266 PHE267 PHE268 GLU269 ASP270 LEU271 LYS272 ALA273 ARG274 GLY275 HIS276 ALA277 PRO278 CYS279 VAL280 VAL281 THR282 TYR283 ASN284 ALA285 LEU286 LEU287 GLN288 VAL289 PHE290 GLY291 LYS292 ALA293 GLY294 ASN295 TYR296 THR297 GLU298 ALA299 LEU300 ARG301 VAL302 LEU303 GLY304 GLU305 MET306 GLU307 GLN308 ASN309 GLY310 CYS311 GLN312 PRO313 ASP314 ALA315 VAL316 THR317 TYR318 ASN319 GLU320 LEU321 ALA322 GLY323 THR324 GLU332 GLU333 ALA334 ALA335 ARG336 CYS337 LEU338 ASP339 THR340 MET341 ALA342 SER343 PRO348 ASN349 ALA350 PHE351 THR352 TYR353 ASN354 THR355 VAL356 MET357 THR358 ALA359 TYR360 GLY361 ASN362 VAL363 GLY364 LYS365 VAL366 ASP367 GLU368 ALA369 LEU370 ALA371 LEU372 PHE373 ASP374 GLN375 MET376 LYS377 LYS378 THR379 GLY380 PHE381 VAL382 PRO383 ASN384 VAL385 ASN386 THR387 TYR388 ASN389 LEU390 VAL391 LEU392 GLY393 MET394 LEU395 GLY396 LYS397 LYS398 SER399 ARG400 PHE401 THR402 VAL403 MET404 LEU405 GLU406 MET407 LEU408 GLY409 GLU410 MET411 SER412 ARG413 SER414 GLY415 CYS416 THR417 PRO418 ASN419 ARG420 VAL421 THR422 TRP423 ASN424 THR425 MET426 LEU427 ALA428 VAL429 SER430 GLY431 LYS432 ARG433 GLY434 MET435 GLU436 ASP437 TYR438 VAL439 THR440 ARG441 VAL442 LEU443 GLU444 GLY445 MET446 ARG447 SER448 SER449 GLY450 VAL451 GLU452 LEU453 SER454 ARG455 ASP456 THR457 TYR458 ASN459 THR460 LEU461 ILE462 ALA463 ALA464 TYR465 GLY466 ARG467 CYS468 GLY469 SER470 ARG471 THR472 ASN473 ALA474 PHE475 LYS476 MET477 TYR478 ASN479 GLU480 MET481 THR482 SER483 ALA484 GLY485 PHE486 THR487 PRO488 CYS489 ILE490 THR491 THR492 TYR493 ASN494 ALA495 LEU496 LEU497 ASN498 VAL499 LEU500 SER501 ARG502 GLN503 GLY504 ASP505 TRP506 SER507 THR508 ALA509 GLN510 SER511 ILE512 VAL513 SER514 LYS515 MET516 ARG517 THR518 LYS519 GLY520 PHE521 LYS522 PRO523 ASN524 GLU525 GLN526 SER527 TYR528 SER529 LEU530 LEU531 LEU532 GLN533 CYS534 TYR535 ALA536 LYS537 GLY538 GLY539 ASN540 VAL541 ALA542 GLY543 ILE544 ALA545 ALA546 ILE547 GLU548 ASN549 GLU550 VAL551 TYR552 GLY553 SER554 GLY555 ALA556 VAL557 PHE558 PRO559 SER560 TRP561 VAL562 ILE563 LEU564 ARG565 THR566 LEU567 VAL568 ILE569 ALA570 ASN571 PHE572 LYS573 CYS574 ARG575 ARG576 LEU577 ASP578 GLY579 MET580 GLU581 THR582 ALA583 PHE584 GLN585 GLU586 VAL587 LYS588 ALA589 ARG590 GLY591 TYR592 ASN593 PRO594 ASP595 LEU596 VAL597 ILE598 PHE599 ASN600 SER601 MET602 LEU603 SER604 ILE605 TYR606 ALA607 LYS608 ASN609 GLY610 MET611 TYR612 SER613 LYS614 ALA615 THR616 GLU617 VAL618 PHE619 ASP620 SER621 ILE622 LYS623 ARG624 SER625 GLY626 LEU627 SER628 PRO629 ASP630 LEU631 ILE632 THR633 TYR634 ASN635 SER636 LEU637 MET638 ASP639 MET640 TYR641 ALA642 LYS643 CYS644 SER645 GLU646 SER647 TRP648 GLU649 ALA650 GLU651 LYS652 ILE653 LEU654 ASN655 GLN656 LEU657 LYS658 CYS659 SER660 GLN661 THR662 MET663 LYS664 PRO665 ASP666 VAL667 VAL668 SER669 TYR670 ASN671 THR672 VAL673 ILE674 ASN675 GLY676 PHE677 CYS678 LYS679 GLN680 GLY681 LEU682 VAL683 LYS684 GLU685 ALA686 GLN687 ARG688 VAL689 LEU690 SER691 GLU692 MET693 VAL694 ALA695 ASP696 GLY697 MET698 ALA699 PRO700 CYS701 ALA702 VAL703 THR704 TYR705 HIS706 THR707 LEU708 VAL709 GLY710 GLY711 TYR712 SER713 SER714 LEU715 GLU716 MET717 PHE718 SER719 GLU720 ALA721 ARG722 GLU723 VAL724 ILE725 GLY726 TYR727 MET728 VAL729 GLN730 HIS731 GLY732 LEU733 LYS734 PRO735 MET736 GLU737 LEU738 THR739 TYR740 ARG741 ARG742 VAL743 VAL744 GLU745 SER746 TYR747 CYS748 ARG749 ALA750 PHE753 GLU754 GLU755 ALA756 ARG757 GLY758 PHE759 LEU760 SER761 GLU762 VAL763 LYS773 ALA774 LEU775 GLU776 ALA777 TYR778 ILE779 GLU780 ASP781 ALA782
Unit 2 LEU72 SER73 PRO74 ASP75 ALA76 GLN77 VAL78 LEU79 VAL80 LEU81 ALA82 ILE83 SER84 SER85 HIS86 PRO87 LEU88 PRO89 THR90 LEU91 ALA92 ALA93 PHE94 LEU95 ALA96 SER97 ARG98 ARG99 ASP100 GLU101 LEU102 LEU103 ARG104 ALA105 ASP106 ILE107 THR108 SER109 LEU110 LEU111 LYS112 ALA113 LEU114 GLU115 LEU116 SER117 GLY118 HIS119 TRP120 GLU121 TRP122 ALA123 LEU124 ALA125 LEU126 LEU127 ARG128 TRP129 ALA130 GLY131 LYS132 GLU133 GLY134 ALA135 ALA136 ASP137 ALA138 SER139 ALA140 LEU141 GLU142 MET143 VAL144 VAL145 ARG146 ALA147 LEU148 GLY149 ARG150 GLU151 GLY152 GLN153 HIS154 ASP155 ALA156 VAL157 CYS158 ALA159 LEU160 LEU161 ASP162 GLU163 THR164 PRO165 LEU166 PRO167 PRO168 GLY169 SER170 ARG171 LEU172 ASP173 VAL174 ARG175 ALA176 TYR177 THR178 THR179 VAL180 LEU181 HIS182 ALA183 LEU184 SER185 ARG186 ALA187 GLY188 ARG189 TYR190 GLU191 ARG192 ALA193 LEU194 GLU195 LEU196 PHE197 ALA198 GLU199 LEU200 ARG201 ARG202 GLN203 GLY204 VAL205 ALA206 PRO207 THR208 LEU209 VAL210 THR211 TYR212 ASN213 VAL214 VAL215 LEU216 ASP217 VAL218 TYR219 GLY220 ARG221 MET222 GLY223 ARG224 SER225 TRP226 PRO227 ARG228 ILE229 VAL230 ALA231 LEU232 LEU233 ASP234 GLU235 MET236 ARG237 ALA238 ALA239 GLY240 VAL241 GLU242 PRO243 ASP244 GLY245 PHE246 THR247 ALA248 SER249 THR250 VAL251 ILE252 ALA253 ALA254 CYS255 SER256 ARG257 ASP258 GLY259 LEU260 VAL261 ASP262 GLU263 ALA264 VAL265 ALA266 PHE267 PHE268 GLU269 ASP270 LEU271 LYS272 ALA273 ARG274 GLY275 HIS276 ALA277 PRO278 CYS279 VAL280 VAL281 THR282 TYR283 ASN284 ALA285 LEU286 LEU287 GLN288 VAL289 PHE290 GLY291 LYS292 ALA293 GLU298 ALA299 LEU300 ARG301 VAL302 LEU303 GLY304 GLU305 MET306 GLU307 GLN308 ASN309 GLY310 PRO313 ASP314 ALA315 VAL316 THR317 TYR318 ASN319 GLU320 LEU321 ALA322 GLY323 THR324 TYR325 ALA326 ARG327 ALA328 GLY329 PHE330 PHE331 GLU332 GLU333 ALA334 ALA335 ARG336 CYS337 LEU338 ASP339 THR340 MET341 ALA350 PHE351 THR352 TYR353 ASN354 THR355 VAL356 MET357 THR358 ALA359 TYR360 GLY361 ASN362 VAL363 GLY364 LYS365 VAL366 ASP367 GLU368 ALA369 LEU370 ALA371 LEU372 PHE373 ASP374 GLN375 MET376 LYS377 LYS378 THR379 GLY380 PHE381 VAL382 PRO383 ASN384 VAL385 ASN386 THR387 TYR388 ASN389 LEU390 VAL391 LEU392 GLY393 MET394 LEU395 GLY396 LYS397 LYS398 SER399 ARG400 PHE401 THR402 VAL403 MET404 LEU405 GLU406 MET407 LEU408 GLY409 GLU410 MET411 SER412 ARG413 SER414 GLY415 CYS416 THR417 PRO418 ASN419 ARG420 VAL421 THR422 TRP423 ASN424 THR425 MET426 LEU427 ALA428 VAL429 SER430 GLY431 LYS432 ARG433 GLY434 MET435 GLU436 ASP437 TYR438 VAL439 THR440 ARG441 VAL442 LEU443 GLU444 GLY445 MET446 ARG447 SER448 SER449 GLY450 VAL451 GLU452 LEU453 SER454 ARG455 ASP456 THR457 TYR458 ASN459 THR460 LEU461 ILE462 ALA463 ALA464 TYR465 GLY466 ARG467 CYS468 GLY469 SER470 ARG471 THR472 ASN473 ALA474 PHE475 LYS476 MET477 TYR478 ASN479 GLU480 MET481 THR482 SER483 ALA484 GLY485 PHE486 THR487 PRO488 CYS489 ILE490 THR491 THR492 TYR493 ASN494 ALA495 LEU496 LEU497 ASN498 VAL499 LEU500 SER501 ARG502 GLN503 GLY504 ASP505 TRP506 SER507 THR508 ALA509 GLN510 SER511 ILE512 VAL513 SER514 LYS515 MET516 ARG517 THR518 LYS519 GLY520 PHE521 LYS522 PRO523 ASN524 GLU525 GLN526 SER527 TYR528 SER529 LEU530 LEU531 LEU532 GLN533 CYS534 TYR535 ALA536 LYS537 GLY538 GLY539 ASN540 VAL541 ALA542 GLY543 ILE544 ALA545 ALA546 ILE547 GLU548 ASN549 GLU550 VAL551 TYR552 VAL557 PHE558 PRO559 SER560 TRP561 VAL562 ILE563 LEU564 ARG565 THR566 LEU567 VAL568 ILE569 ALA570 ASN571 PHE572 LYS573 CYS574 ARG575 ARG576 LEU577 ASP578 GLY579 MET580 GLU581 THR582 ALA583 PHE584 GLN585 GLU586 VAL587 LYS588 ALA589 ARG590 GLY591 TYR592 ASN593 PRO594 ASP595 LEU596 VAL597 ILE598 PHE599 ASN600 SER601 MET602 LEU603 SER604 ILE605 TYR606 ALA607 LYS608 ASN609 GLY610 MET611 TYR612 SER613 LYS614 ALA615 THR616 GLU617 VAL618 PHE619 ASP620 SER621 ILE622 LYS623 ARG624 SER625 GLY626 LEU627 SER628 PRO629 ASP630 LEU631 ILE632 THR633 TYR634 ASN635 SER636 LEU637 MET638 ASP639 MET640 TYR641 ALA642 LYS643 CYS644 SER645 GLU646 SER647 TRP648 GLU649 ALA650 GLU651 LYS652 ILE653 LEU654 ASN655 GLN656 LEU657 LYS658 CYS659 SER660 GLN661 THR662 MET663 LYS664 PRO665 ASP666 VAL667 VAL668 SER669 TYR670 ASN671 THR672 VAL673 ILE674 ASN675 GLY676 PHE677 CYS678 LYS679 GLN680 GLY681 LEU682 VAL683 LYS684 GLU685 ALA686 GLN687 ARG688 VAL689 LEU690 SER691 GLU692 MET693 VAL694 ALA695 ASP696 GLY697 MET698 ALA699 PRO700 CYS701 ALA702 VAL703 THR704 TYR705 HIS706 THR707 LEU708 VAL709 GLY710 GLY711 TYR712 SER713 SER714 LEU715 GLU716 MET717 PHE718 SER719 GLU720 ALA721 ARG722 GLU723 VAL724 ILE725 GLY726 TYR727 MET728 VAL729 GLN730 HIS731 GLY732 LEU733 LYS734 PRO735 MET736 GLU737 LEU738 THR739 TYR740 ARG741 ARG742 VAL743 VAL744 GLU745 SER746 TYR747 CYS748 ARG749 ALA750 LYS751 ARG752 PHE753 GLU754 GLU755 ALA756 ARG757 GLY758 PHE759 LEU760 LYS773 ALA774 LEU775 GLU776 ALA777 TYR778 ILE779 GLU780 ASP781 ALA782 GLN783 PHE784
Nucleic acids
Unit 3 G1 U2 A3 U4 U5 C6 U7 U8 U9 A10 A11 U12 U13 A14 U15 U16 U17 C18
Unit 4 G1 U2 A3 U4 U5 C6 A11 U12 U13 A14 U15 U16 U17 C18
Ligands
Unit 5 PO4801
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany