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Sequence, Chains, Asymmetric and Biological Units

Title SUBSTRATE-BOUND STRUCTURE OF A UBIA HOMOLOG FROM AEROPYRUM P
Keywords ALL ALPHA HELICAL, INTRAMEMBRANE AROMATIC PRENYLTRANSFERASE, MEMBRANE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OD5     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  A 274 1997 0
2  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  B 274 1997 0
3  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  C 274 1997 0
4  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  D 274 1997 0
5  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  E 274 1997 0
6  Protein   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  F 274 1997 0
7  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  A 4 0 31
8  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  B 4 0 31
9  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  C 4 0 31
10  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  D 4 0 31
11  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  E 4 0 31
12  Ligand   4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE  F 4 0 31
13 Water     1 0 6
total       1669 11982 192
Proteins
Unit 1 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Unit 2 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Unit 3 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Unit 4 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Unit 5 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Unit 6 ARG2 LEU3 VAL4 ARG5 ILE6 GLU7 HIS8 THR9 ILE10 PHE11 SER12 LEU13 PRO14 PHE15 ALA16 TYR17 VAL18 GLY19 ALA20 LEU21 LEU22 SER23 ARG24 TYR25 PRO26 PHE27 THR28 LEU29 ALA30 ASP31 ALA32 ILE33 LEU34 MET35 ALA36 ALA37 ALA38 VAL39 VAL40 GLY41 LEU42 ARG43 MET44 ALA45 GLY46 MET47 ALA48 TYR49 ASN50 ASN51 ILE52 ALA53 ASP54 LEU55 ASP56 ILE57 ASP58 ARG59 LEU60 ASN61 PRO62 ARG63 THR64 ALA65 LYS66 ARG67 PRO68 LEU69 VAL70 VAL71 GLY72 ALA73 VAL74 SER75 LEU76 ARG77 GLU78 ALA79 TRP80 ALA81 LEU82 VAL83 ALA84 ALA85 GLY86 SER87 ALA88 ILE89 TYR90 PHE91 ALA92 SER93 ALA94 ALA95 LEU96 LEU97 ASN98 THR99 TYR100 ALA101 LEU102 LEU103 LEU104 SER105 PRO106 LEU107 VAL108 LEU109 ALA110 ILE111 ALA112 LEU113 THR114 TYR115 PRO116 HIS117 ALA118 LYS119 ARG120 LEU121 HIS122 PRO123 LEU124 PRO125 HIS126 LEU127 HIS128 LEU129 GLY130 ILE131 VAL132 LEU133 GLY134 SER135 VAL136 VAL137 PHE138 GLY139 GLY140 ALA141 VAL142 ALA143 ALA144 SER145 GLY146 ASP147 GLU148 ALA149 SER150 SER151 LEU152 GLY153 GLU154 VAL155 LEU156 ARG157 SER158 VAL159 PRO160 TRP161 LEU162 TYR163 VAL164 ALA165 ALA166 VAL167 SER168 LEU169 TRP170 VAL171 ALA172 GLY173 PHE174 ASP175 THR176 ILE177 TYR178 SER179 ILE180 MET181 ASP182 ILE183 ASP184 PHE185 ASP186 ARG187 SER188 HIS189 GLY190 LEU191 GLY192 SER193 ILE194 PRO195 ALA196 LEU197 LEU198 GLY199 PRO200 LYS201 GLY202 ALA203 LEU204 ALA205 ALA206 SER207 LEU208 ALA209 MET210 HIS211 ALA212 ALA213 ALA214 VAL215 ALA216 LEU217 PHE218 ILE219 ALA220 GLY221 VAL222 GLU223 ALA224 TYR225 GLY226 LEU227 GLY228 ALA229 ILE230 ALA231 THR232 VAL233 SER234 THR235 ALA236 LEU237 THR238 ALA239 LEU240 VAL241 ILE242 ILE243 LEU244 VAL245 GLN246 ALA247 MET248 ALA249 TRP250 LEU251 GLY252 ARG253 VAL254 LYS255 GLU256 SER257 PHE258 ASN259 LEU260 ASN261 LEU262 ALA263 VAL264 PRO265 ILE266 ILE267 ILE268 GLY269 ALA270 GLY271 ILE272 ILE273 VAL274 ASP275
Ligands
Unit 7 GST301 PHB302 MG303 MG304
Unit 8 GST301 PHB302 MG303 MG304
Unit 9 GST301 PHB302 MG303 MG304
Unit 10 GST301 PHB302 MG303 MG304
Unit 11 GST301 PHB302 MG303 MG304
Unit 12 GST301 PHB302 MG303 MG304
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany