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Sequence, Chains, Asymmetric and Biological Units

Title RUMINOCOCCUS GNAVUS TRYPTOPHAN DECARBOXYLASE RUMGNA_01526 (A
Keywords TYPE 1 PLP-DEPENDENT, DECARBOXYLASE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4OBV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  D 469 3692 0
2  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  C 471 3714 0
3  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  B 470 3701 0
4  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  A 471 3714 0
5  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  D 2 0 45
6  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  C 1 0 17
7  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  B 2 0 45
8  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN PROTEIN  A 3 0 73
total       1889 14821 180
Proteins
Unit 1 THR16 GLU17 TYR18 ILE19 LEU20 ASN21 SER22 THR23 GLN24 LEU25 GLU26 GLU27 ALA28 ILE29 LYS30 SER31 PHE32 VAL33 HIS34 ASP35 PHE36 CYS37 ALA38 GLU39 LYS40 HIS41 GLU42 ILE43 HIS44 ASP45 GLN46 PRO47 VAL48 VAL49 VAL50 GLU51 ALA52 LYS53 GLU54 HIS55 GLN56 GLU57 ASP58 LYS59 ILE60 LYS61 GLN62 ILE63 LYS64 ILE65 PRO66 GLU67 LYS68 GLY69 ARG70 PRO71 VAL72 ASN73 GLU74 VAL75 VAL76 SER77 GLU78 MET79 MET80 ASN81 GLU82 VAL83 TYR84 ARG85 TYR86 ARG87 GLY88 ASP89 ALA90 ASN91 HIS92 PRO93 ARG94 PHE95 PHE96 SER97 PHE98 VAL99 PRO100 GLY101 PRO102 ALA103 SER104 SER105 VAL106 SER107 TRP108 LEU109 GLY110 ASP111 ILE112 MET113 THR114 SER115 ALA116 TYR117 ASN118 ILE119 HIS120 ALA121 GLY122 GLY123 SER124 LYS125 LEU126 ALA127 PRO128 MET129 VAL130 ASN131 CYS132 ILE133 GLU134 GLN135 GLU136 VAL137 LEU138 LYS139 TRP140 LEU141 ALA142 LYS143 GLN144 VAL145 GLY146 PHE147 THR148 GLU149 ASN150 PRO151 GLY152 GLY153 VAL154 PHE155 VAL156 SER157 GLY158 GLY159 SER160 MET161 ALA162 ASN163 ILE164 THR165 ALA166 LEU167 THR168 ALA169 ALA170 ARG171 ASP172 ASN173 LYS174 LEU175 THR176 ASP177 ILE178 ASN179 LEU180 HIS181 LEU182 GLY183 THR184 ALA185 TYR186 ILE187 SER188 ASP189 GLN190 THR191 HIS192 SER193 SER194 VAL195 ALA196 LYS197 GLY198 LEU199 ARG200 ILE201 ILE202 GLY203 ILE204 THR205 ASP206 SER207 ARG208 ILE209 ARG210 ARG211 ILE212 PRO213 THR214 ASN215 SER216 HIS217 PHE218 GLN219 MET220 ASP221 THR222 THR223 LYS224 LEU225 GLU226 GLU227 ALA228 ILE229 GLU230 THR231 ASP232 LYS233 LYS234 SER235 GLY236 TYR237 ILE238 PRO239 PHE240 VAL241 VAL242 ILE243 GLY244 THR245 ALA246 GLY247 THR248 THR249 ASN250 THR251 GLY252 SER253 ILE254 ASP255 PRO256 LEU257 THR258 GLU259 ILE260 SER261 ALA262 LEU263 CYS264 LYS265 LYS266 HIS267 ASP268 MET269 TRP270 PHE271 HIS272 ILE273 ASP274 GLY275 ALA276 TYR277 GLY278 ALA279 SER280 VAL281 LEU282 LEU283 SER284 PRO285 LYS286 TYR287 LYS288 SER289 LEU290 LEU291 THR292 GLY293 THR294 GLY295 LEU296 ALA297 ASP298 SER299 ILE300 SER301 TRP302 ASP303 ALA304 HIS305 LYS306 TRP307 LEU308 PHE309 GLN310 THR311 TYR312 GLY313 CYS314 ALA315 MET316 VAL317 LEU318 VAL319 LYS320 ASP321 ILE322 ARG323 ASN324 LEU325 PHE326 HIS327 SER328 PHE329 HIS330 VAL331 ASN332 PRO333 GLU334 TYR335 LEU336 LYS337 ASP338 LEU339 GLU340 ASP344 ASN345 VAL346 ASN347 THR348 TRP349 ASP350 ILE351 GLY352 MET353 GLU354 LEU355 THR356 ARG357 PRO358 ALA359 ARG360 GLY361 LEU362 LYS363 LEU364 TRP365 LEU366 THR367 LEU368 GLN369 VAL370 LEU371 GLY372 SER373 ASP374 LEU375 ILE376 GLY377 SER378 ALA379 ILE380 GLU381 HIS382 GLY383 PHE384 GLN385 LEU386 ALA387 VAL388 TRP389 ALA390 GLU391 GLU392 ALA393 LEU394 ASN395 PRO396 LYS397 LYS398 ASP399 TRP400 GLU401 ILE402 VAL403 SER404 PRO405 ALA406 GLN407 MET408 ALA409 MET410 ILE411 ASN412 PHE413 ARG414 TYR415 ALA416 PRO417 LYS418 ASP419 LEU420 THR421 LYS422 GLU423 GLU424 GLN425 ASP426 ILE427 LEU428 ASN429 GLU430 LYS431 ILE432 SER433 HIS434 ARG435 ILE436 LEU437 GLU438 SER439 GLY440 TYR441 ALA442 ALA443 ILE444 PHE445 THR446 THR447 VAL448 LEU449 ASN450 GLY451 LYS452 THR453 VAL454 LEU455 ARG456 ILE457 CYS458 ALA459 ILE460 HIS461 PRO462 GLU463 ALA464 THR465 GLN466 GLU467 ASP468 MET469 GLN470 HIS471 THR472 ILE473 ASP474 LEU475 LEU476 ASP477 GLN478 TYR479 GLY480 ARG481 GLU482 ILE483 TYR484 THR485 GLU486 MET487
Unit 2 THR16 GLU17 TYR18 ILE19 LEU20 ASN21 SER22 THR23 GLN24 LEU25 GLU26 GLU27 ALA28 ILE29 LYS30 SER31 PHE32 VAL33 HIS34 ASP35 PHE36 CYS37 ALA38 GLU39 LYS40 HIS41 GLU42 ILE43 HIS44 ASP45 GLN46 PRO47 VAL48 VAL49 VAL50 GLU51 ALA52 LYS53 GLU54 HIS55 GLN56 GLU57 ASP58 LYS59 ILE60 LYS61 GLN62 ILE63 LYS64 ILE65 PRO66 GLU67 LYS68 GLY69 ARG70 PRO71 VAL72 ASN73 GLU74 VAL75 VAL76 SER77 GLU78 MET79 MET80 ASN81 GLU82 VAL83 TYR84 ARG85 TYR86 ARG87 GLY88 ASP89 ALA90 ASN91 HIS92 PRO93 ARG94 PHE95 PHE96 SER97 PHE98 VAL99 PRO100 GLY101 PRO102 ALA103 SER104 SER105 VAL106 SER107 TRP108 LEU109 GLY110 ASP111 ILE112 MET113 THR114 SER115 ALA116 TYR117 ASN118 ILE119 HIS120 ALA121 GLY122 GLY123 SER124 LYS125 LEU126 ALA127 PRO128 MET129 VAL130 ASN131 CYS132 ILE133 GLU134 GLN135 GLU136 VAL137 LEU138 LYS139 TRP140 LEU141 ALA142 LYS143 GLN144 VAL145 GLY146 PHE147 THR148 GLU149 ASN150 PRO151 GLY152 GLY153 VAL154 PHE155 VAL156 SER157 GLY158 GLY159 SER160 MET161 ALA162 ASN163 ILE164 THR165 ALA166 LEU167 THR168 ALA169 ALA170 ARG171 ASP172 ASN173 LYS174 LEU175 THR176 ASP177 ILE178 ASN179 LEU180 HIS181 LEU182 GLY183 THR184 ALA185 TYR186 ILE187 SER188 ASP189 GLN190 THR191 HIS192 SER193 SER194 VAL195 ALA196 LYS197 GLY198 LEU199 ARG200 ILE201 ILE202 GLY203 ILE204 THR205 ASP206 SER207 ARG208 ILE209 ARG210 ARG211 ILE212 PRO213 THR214 ASN215 SER216 HIS217 PHE218 GLN219 MET220 ASP221 THR222 THR223 LYS224 LEU225 GLU226 GLU227 ALA228 ILE229 GLU230 THR231 ASP232 LYS233 LYS234 SER235 GLY236 TYR237 ILE238 PRO239 PHE240 VAL241 VAL242 ILE243 GLY244 THR245 ALA246 GLY247 THR248 THR249 ASN250 THR251 GLY252 SER253 ILE254 ASP255 PRO256 LEU257 THR258 GLU259 ILE260 SER261 ALA262 LEU263 CYS264 LYS265 LYS266 HIS267 ASP268 MET269 TRP270 PHE271 HIS272 ILE273 ASP274 GLY275 ALA276 TYR277 GLY278 ALA279 SER280 VAL281 LEU282 LEU283 SER284 PRO285 LYS286 TYR287 LYS288 SER289 LEU290 LEU291 THR292 GLY293 THR294 GLY295 LEU296 ALA297 ASP298 SER299 ILE300 SER301 TRP302 ASP303 ALA304 HIS305 LYS306 TRP307 LEU308 PHE309 GLN310 THR311 TYR312 GLY313 CYS314 ALA315 MET316 VAL317 LEU318 VAL319 LYS320 ASP321 ILE322 ARG323 ASN324 LEU325 PHE326 HIS327 SER328 PHE329 HIS330 VAL331 ASN332 PRO333 GLU334 TYR335 LEU336 LYS337 ASP338 LEU339 GLU340 ASP344 ASN345 VAL346 ASN347 THR348 TRP349 ASP350 ILE351 GLY352 MET353 GLU354 LEU355 THR356 ARG357 PRO358 ALA359 ARG360 GLY361 LEU362 LYS363 LEU364 TRP365 LEU366 THR367 LEU368 GLN369 VAL370 LEU371 GLY372 SER373 ASP374 LEU375 ILE376 GLY377 SER378 ALA379 ILE380 GLU381 HIS382 GLY383 PHE384 GLN385 LEU386 ALA387 VAL388 TRP389 ALA390 GLU391 GLU392 ALA393 LEU394 ASN395 PRO396 LYS397 LYS398 ASP399 TRP400 GLU401 ILE402 VAL403 SER404 PRO405 ALA406 GLN407 MET408 ALA409 MET410 ILE411 ASN412 PHE413 ARG414 TYR415 ALA416 PRO417 LYS418 ASP419 LEU420 THR421 LYS422 GLU423 GLU424 GLN425 ASP426 ILE427 LEU428 ASN429 GLU430 LYS431 ILE432 SER433 HIS434 ARG435 ILE436 LEU437 GLU438 SER439 GLY440 TYR441 ALA442 ALA443 ILE444 PHE445 THR446 THR447 VAL448 LEU449 ASN450 GLY451 LYS452 THR453 VAL454 LEU455 ARG456 ILE457 CYS458 ALA459 ILE460 HIS461 PRO462 GLU463 ALA464 THR465 GLN466 GLU467 ASP468 MET469 GLN470 HIS471 THR472 ILE473 ASP474 LEU475 LEU476 ASP477 GLN478 TYR479 GLY480 ARG481 GLU482 ILE483 TYR484 THR485 GLU486 MET487 LYS488 LYS489
Unit 3 THR16 GLU17 TYR18 ILE19 LEU20 ASN21 SER22 THR23 GLN24 LEU25 GLU26 GLU27 ALA28 ILE29 LYS30 SER31 PHE32 VAL33 HIS34 ASP35 PHE36 CYS37 ALA38 GLU39 LYS40 HIS41 GLU42 ILE43 HIS44 ASP45 GLN46 PRO47 VAL48 VAL49 VAL50 GLU51 ALA52 LYS53 GLU54 HIS55 GLN56 GLU57 ASP58 LYS59 ILE60 LYS61 GLN62 ILE63 LYS64 ILE65 PRO66 GLU67 LYS68 GLY69 ARG70 PRO71 VAL72 ASN73 GLU74 VAL75 VAL76 SER77 GLU78 MET79 MET80 ASN81 GLU82 VAL83 TYR84 ARG85 TYR86 ARG87 GLY88 ASP89 ALA90 ASN91 HIS92 PRO93 ARG94 PHE95 PHE96 SER97 PHE98 VAL99 PRO100 GLY101 PRO102 ALA103 SER104 SER105 VAL106 SER107 TRP108 LEU109 GLY110 ASP111 ILE112 MET113 THR114 SER115 ALA116 TYR117 ASN118 ILE119 HIS120 ALA121 GLY122 GLY123 SER124 LYS125 LEU126 ALA127 PRO128 MET129 VAL130 ASN131 CYS132 ILE133 GLU134 GLN135 GLU136 VAL137 LEU138 LYS139 TRP140 LEU141 ALA142 LYS143 GLN144 VAL145 GLY146 PHE147 THR148 GLU149 ASN150 PRO151 GLY152 GLY153 VAL154 PHE155 VAL156 SER157 GLY158 GLY159 SER160 MET161 ALA162 ASN163 ILE164 THR165 ALA166 LEU167 THR168 ALA169 ALA170 ARG171 ASP172 ASN173 LYS174 LEU175 THR176 ASP177 ILE178 ASN179 LEU180 HIS181 LEU182 GLY183 THR184 ALA185 TYR186 ILE187 SER188 ASP189 GLN190 THR191 HIS192 SER193 SER194 VAL195 ALA196 LYS197 GLY198 LEU199 ARG200 ILE201 ILE202 GLY203 ILE204 THR205 ASP206 SER207 ARG208 ILE209 ARG210 ARG211 ILE212 PRO213 THR214 ASN215 SER216 HIS217 PHE218 GLN219 MET220 ASP221 THR222 THR223 LYS224 LEU225 GLU226 GLU227 ALA228 ILE229 GLU230 THR231 ASP232 LYS233 LYS234 SER235 GLY236 TYR237 ILE238 PRO239 PHE240 VAL241 VAL242 ILE243 GLY244 THR245 ALA246 GLY247 THR248 THR249 ASN250 THR251 GLY252 SER253 ILE254 ASP255 PRO256 LEU257 THR258 GLU259 ILE260 SER261 ALA262 LEU263 CYS264 LYS265 LYS266 HIS267 ASP268 MET269 TRP270 PHE271 HIS272 ILE273 ASP274 GLY275 ALA276 TYR277 GLY278 ALA279 SER280 VAL281 LEU282 LEU283 SER284 PRO285 LYS286 TYR287 LYS288 SER289 LEU290 LEU291 THR292 GLY293 THR294 GLY295 LEU296 ALA297 ASP298 SER299 ILE300 SER301 TRP302 ASP303 ALA304 HIS305 LYS306 TRP307 LEU308 PHE309 GLN310 THR311 TYR312 GLY313 CYS314 ALA315 MET316 VAL317 LEU318 VAL319 LYS320 ASP321 ILE322 ARG323 ASN324 LEU325 PHE326 HIS327 SER328 PHE329 HIS330 VAL331 ASN332 PRO333 GLU334 TYR335 LEU336 LYS337 ASP338 LEU339 GLU340 ASP344 ASN345 VAL346 ASN347 THR348 TRP349 ASP350 ILE351 GLY352 MET353 GLU354 LEU355 THR356 ARG357 PRO358 ALA359 ARG360 GLY361 LEU362 LYS363 LEU364 TRP365 LEU366 THR367 LEU368 GLN369 VAL370 LEU371 GLY372 SER373 ASP374 LEU375 ILE376 GLY377 SER378 ALA379 ILE380 GLU381 HIS382 GLY383 PHE384 GLN385 LEU386 ALA387 VAL388 TRP389 ALA390 GLU391 GLU392 ALA393 LEU394 ASN395 PRO396 LYS397 LYS398 ASP399 TRP400 GLU401 ILE402 VAL403 SER404 PRO405 ALA406 GLN407 MET408 ALA409 MET410 ILE411 ASN412 PHE413 ARG414 TYR415 ALA416 PRO417 LYS418 ASP419 LEU420 THR421 LYS422 GLU423 GLU424 GLN425 ASP426 ILE427 LEU428 ASN429 GLU430 LYS431 ILE432 SER433 HIS434 ARG435 ILE436 LEU437 GLU438 SER439 GLY440 TYR441 ALA442 ALA443 ILE444 PHE445 THR446 THR447 VAL448 LEU449 ASN450 GLY451 LYS452 THR453 VAL454 LEU455 ARG456 ILE457 CYS458 ALA459 ILE460 HIS461 PRO462 GLU463 ALA464 THR465 GLN466 GLU467 ASP468 MET469 GLN470 HIS471 THR472 ILE473 ASP474 LEU475 LEU476 ASP477 GLN478 TYR479 GLY480 ARG481 GLU482 ILE483 TYR484 THR485 GLU486 MET487 LYS488
Unit 4 THR16 GLU17 TYR18 ILE19 LEU20 ASN21 SER22 THR23 GLN24 LEU25 GLU26 GLU27 ALA28 ILE29 LYS30 SER31 PHE32 VAL33 HIS34 ASP35 PHE36 CYS37 ALA38 GLU39 LYS40 HIS41 GLU42 ILE43 HIS44 ASP45 GLN46 PRO47 VAL48 VAL49 VAL50 GLU51 ALA52 LYS53 GLU54 HIS55 GLN56 GLU57 ASP58 LYS59 ILE60 LYS61 GLN62 ILE63 LYS64 ILE65 PRO66 GLU67 LYS68 GLY69 ARG70 PRO71 VAL72 ASN73 GLU74 VAL75 VAL76 SER77 GLU78 MET79 MET80 ASN81 GLU82 VAL83 TYR84 ARG85 TYR86 ARG87 GLY88 ASP89 ALA90 ASN91 HIS92 PRO93 ARG94 PHE95 PHE96 SER97 PHE98 VAL99 PRO100 GLY101 PRO102 ALA103 SER104 SER105 VAL106 SER107 TRP108 LEU109 GLY110 ASP111 ILE112 MET113 THR114 SER115 ALA116 TYR117 ASN118 ILE119 HIS120 ALA121 GLY122 GLY123 SER124 LYS125 LEU126 ALA127 PRO128 MET129 VAL130 ASN131 CYS132 ILE133 GLU134 GLN135 GLU136 VAL137 LEU138 LYS139 TRP140 LEU141 ALA142 LYS143 GLN144 VAL145 GLY146 PHE147 THR148 GLU149 ASN150 PRO151 GLY152 GLY153 VAL154 PHE155 VAL156 SER157 GLY158 GLY159 SER160 MET161 ALA162 ASN163 ILE164 THR165 ALA166 LEU167 THR168 ALA169 ALA170 ARG171 ASP172 ASN173 LYS174 LEU175 THR176 ASP177 ILE178 ASN179 LEU180 HIS181 LEU182 GLY183 THR184 ALA185 TYR186 ILE187 SER188 ASP189 GLN190 THR191 HIS192 SER193 SER194 VAL195 ALA196 LYS197 GLY198 LEU199 ARG200 ILE201 ILE202 GLY203 ILE204 THR205 ASP206 SER207 ARG208 ILE209 ARG210 ARG211 ILE212 PRO213 THR214 ASN215 SER216 HIS217 PHE218 GLN219 MET220 ASP221 THR222 THR223 LYS224 LEU225 GLU226 GLU227 ALA228 ILE229 GLU230 THR231 ASP232 LYS233 LYS234 SER235 GLY236 TYR237 ILE238 PRO239 PHE240 VAL241 VAL242 ILE243 GLY244 THR245 ALA246 GLY247 THR248 THR249 ASN250 THR251 GLY252 SER253 ILE254 ASP255 PRO256 LEU257 THR258 GLU259 ILE260 SER261 ALA262 LEU263 CYS264 LYS265 LYS266 HIS267 ASP268 MET269 TRP270 PHE271 HIS272 ILE273 ASP274 GLY275 ALA276 TYR277 GLY278 ALA279 SER280 VAL281 LEU282 LEU283 SER284 PRO285 LYS286 TYR287 LYS288 SER289 LEU290 LEU291 THR292 GLY293 THR294 GLY295 LEU296 ALA297 ASP298 SER299 ILE300 SER301 TRP302 ASP303 ALA304 HIS305 LYS306 TRP307 LEU308 PHE309 GLN310 THR311 TYR312 GLY313 CYS314 ALA315 MET316 VAL317 LEU318 VAL319 LYS320 ASP321 ILE322 ARG323 ASN324 LEU325 PHE326 HIS327 SER328 PHE329 HIS330 VAL331 ASN332 PRO333 GLU334 TYR335 LEU336 LYS337 ASP338 LEU339 GLU340 ASP344 ASN345 VAL346 ASN347 THR348 TRP349 ASP350 ILE351 GLY352 MET353 GLU354 LEU355 THR356 ARG357 PRO358 ALA359 ARG360 GLY361 LEU362 LYS363 LEU364 TRP365 LEU366 THR367 LEU368 GLN369 VAL370 LEU371 GLY372 SER373 ASP374 LEU375 ILE376 GLY377 SER378 ALA379 ILE380 GLU381 HIS382 GLY383 PHE384 GLN385 LEU386 ALA387 VAL388 TRP389 ALA390 GLU391 GLU392 ALA393 LEU394 ASN395 PRO396 LYS397 LYS398 ASP399 TRP400 GLU401 ILE402 VAL403 SER404 PRO405 ALA406 GLN407 MET408 ALA409 MET410 ILE411 ASN412 PHE413 ARG414 TYR415 ALA416 PRO417 LYS418 ASP419 LEU420 THR421 LYS422 GLU423 GLU424 GLN425 ASP426 ILE427 LEU428 ASN429 GLU430 LYS431 ILE432 SER433 HIS434 ARG435 ILE436 LEU437 GLU438 SER439 GLY440 TYR441 ALA442 ALA443 ILE444 PHE445 THR446 THR447 VAL448 LEU449 ASN450 GLY451 LYS452 THR453 VAL454 LEU455 ARG456 ILE457 CYS458 ALA459 ILE460 HIS461 PRO462 GLU463 ALA464 THR465 GLN466 GLU467 ASP468 MET469 GLN470 HIS471 THR472 ILE473 ASP474 LEU475 LEU476 ASP477 GLN478 TYR479 GLY480 ARG481 GLU482 ILE483 TYR484 THR485 GLU486 MET487 LYS488 LYS489
Ligands
Unit 5 2SU501 3SO502
Unit 6 2SU501
Unit 7 2SU501 3SO502
Unit 8 3SO501 2SU502 3SO503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany