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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RTCA, THE RNA 3'-TERMINAL PHOSPHATE CYC PYROCOCCUS HORIKOSHII, IN COMPLEX WITH RACAAA3'PHOSPHATE AN
Keywords 3' RNA CYCLASE, RNA, LIGASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4O8J     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA 3'-TERMINAL PHOSPHATE CYCLASE  A 341 5358 0
2  Protein   RNA 3'-TERMINAL PHOSPHATE CYCLASE  B 341 5358 0
3  DNA/RNA    D 6 165 0
4  DNA/RNA    E 6 165 0
5  Ligand   RNA 3'-TERMINAL PHOSPHATE CYCLASE  A 1 0 32
6  Ligand   RNA 3'-TERMINAL PHOSPHATE CYCLASE  B 2 0 63
7 Water     610 0 610
total       1307 11046 705
Proteins
Unit 1 MET1 ILE2 THR3 ILE4 ASP5 GLY6 SER7 TYR8 GLY9 GLU10 GLY11 GLY12 GLY13 GLN14 ILE15 LEU16 ARG17 THR18 SER19 VAL20 ALA21 LEU22 SER23 THR24 ILE25 THR26 GLY27 GLU28 PRO29 VAL30 ARG31 ILE32 VAL33 ASN34 ILE35 ARG36 ALA37 ASN38 ARG39 PRO40 ASN41 PRO42 GLY43 LEU44 ARG45 PRO46 GLN47 HIS48 LEU49 HIS50 ALA51 ILE52 LEU53 ALA54 LEU55 LYS56 HIS57 LEU58 ALA59 ASN60 ALA61 GLU62 VAL63 LYS64 GLY65 ALA66 HIS67 VAL68 GLY69 SER70 ARG71 GLU72 LEU73 VAL74 PHE75 ILE76 PRO77 LYS78 LYS79 LEU80 GLU81 ALA82 LYS83 GLU84 ILE85 SER86 ILE87 ASP88 ILE89 GLY90 THR91 ALA92 GLY93 SER94 ILE95 THR96 LEU97 VAL98 LEU99 GLN100 ALA101 LEU102 LEU103 PRO104 ALA105 MET106 VAL107 PHE108 ALA109 ARG110 GLU111 LYS112 VAL113 LYS114 PHE115 ARG116 ILE117 THR118 GLY119 GLY120 THR121 ASP122 VAL123 SER124 TRP125 SER126 PRO127 PRO128 VAL129 ASP130 TYR131 LEU132 SER133 ASN134 VAL135 THR136 LEU137 PHE138 ALA139 LEU140 GLU141 LYS142 ILE143 GLY144 ILE145 HIS146 GLY147 GLU148 ILE149 ARG150 VAL151 ILE152 ARG153 ARG154 GLY155 HIS156 TYR157 PRO158 LYS159 GLY160 GLY161 GLY162 ILE163 VAL164 GLU165 GLY166 TYR167 VAL168 GLU169 PRO170 TRP171 ASN172 GLU173 LYS174 ARG175 GLU176 LEU177 VAL178 ALA179 LYS180 GLU181 TYR182 SER183 ARG184 ILE185 ILE186 LYS187 ILE188 GLU189 GLY190 ILE191 SER192 HIS193 ALA194 THR195 ASN196 LEU197 PRO198 SER199 HIS200 VAL201 ALA202 GLU203 ARG204 GLN205 ALA206 ARG207 ALA208 ALA209 LYS210 ASP211 GLU212 LEU213 LEU214 GLN215 LEU216 LYS217 VAL218 PRO219 ILE220 GLU221 ILE222 ARG223 THR224 GLU225 ILE226 SER227 ARG228 SER229 ILE230 GLY231 PRO232 GLY233 SER234 GLY235 ILE236 VAL237 VAL238 TRP239 ALA240 GLU241 THR242 ASP243 CYS244 LEU245 ARG246 LEU247 GLY248 GLY249 ASP250 ALA251 LEU252 GLY253 LYS254 LYS255 GLY256 LYS257 PRO258 ALA259 GLU260 ILE261 VAL262 GLY263 LYS264 GLU265 ALA266 ALA267 GLN268 GLU269 LEU270 LEU271 ASP272 GLN273 LEU274 LYS275 PRO276 GLY277 HIS278 CYS279 VAL280 ASP281 LYS282 PHE283 LEU284 GLY285 ASP286 GLN287 LEU288 ILE289 PRO290 PHE291 LEU292 ALA293 PHE294 SER295 GLY296 GLY297 VAL298 ILE299 TRP300 VAL301 SER302 GLU303 ILE304 THR305 ASN306 HIS307 LEU308 LYS309 THR310 ASN311 ILE312 TRP313 VAL314 VAL315 GLU316 SER317 PHE318 LEU319 GLY320 ARG321 ILE322 PHE323 ASP324 VAL325 ASP326 GLY327 ASN328 VAL329 GLY330 GLU331 PRO332 GLY333 LYS334 ILE335 ARG336 VAL337 ILE338 ARG339 ARG340 VAL341
Unit 2 MET1 ILE2 THR3 ILE4 ASP5 GLY6 SER7 TYR8 GLY9 GLU10 GLY11 GLY12 GLY13 GLN14 ILE15 LEU16 ARG17 THR18 SER19 VAL20 ALA21 LEU22 SER23 THR24 ILE25 THR26 GLY27 GLU28 PRO29 VAL30 ARG31 ILE32 VAL33 ASN34 ILE35 ARG36 ALA37 ASN38 ARG39 PRO40 ASN41 PRO42 GLY43 LEU44 ARG45 PRO46 GLN47 HIS48 LEU49 HIS50 ALA51 ILE52 LEU53 ALA54 LEU55 LYS56 HIS57 LEU58 ALA59 ASN60 ALA61 GLU62 VAL63 LYS64 GLY65 ALA66 HIS67 VAL68 GLY69 SER70 ARG71 GLU72 LEU73 VAL74 PHE75 ILE76 PRO77 LYS78 LYS79 LEU80 GLU81 ALA82 LYS83 GLU84 ILE85 SER86 ILE87 ASP88 ILE89 GLY90 THR91 ALA92 GLY93 SER94 ILE95 THR96 LEU97 VAL98 LEU99 GLN100 ALA101 LEU102 LEU103 PRO104 ALA105 MET106 VAL107 PHE108 ALA109 ARG110 GLU111 LYS112 VAL113 LYS114 PHE115 ARG116 ILE117 THR118 GLY119 GLY120 THR121 ASP122 VAL123 SER124 TRP125 SER126 PRO127 PRO128 VAL129 ASP130 TYR131 LEU132 SER133 ASN134 VAL135 THR136 LEU137 PHE138 ALA139 LEU140 GLU141 LYS142 ILE143 GLY144 ILE145 HIS146 GLY147 GLU148 ILE149 ARG150 VAL151 ILE152 ARG153 ARG154 GLY155 HIS156 TYR157 PRO158 LYS159 GLY160 GLY161 GLY162 ILE163 VAL164 GLU165 GLY166 TYR167 VAL168 GLU169 PRO170 TRP171 ASN172 GLU173 LYS174 ARG175 GLU176 LEU177 VAL178 ALA179 LYS180 GLU181 TYR182 SER183 ARG184 ILE185 ILE186 LYS187 ILE188 GLU189 GLY190 ILE191 SER192 HIS193 ALA194 THR195 ASN196 LEU197 PRO198 SER199 HIS200 VAL201 ALA202 GLU203 ARG204 GLN205 ALA206 ARG207 ALA208 ALA209 LYS210 ASP211 GLU212 LEU213 LEU214 GLN215 LEU216 LYS217 VAL218 PRO219 ILE220 GLU221 ILE222 ARG223 THR224 GLU225 ILE226 SER227 ARG228 SER229 ILE230 GLY231 PRO232 GLY233 SER234 GLY235 ILE236 VAL237 VAL238 TRP239 ALA240 GLU241 THR242 ASP243 CYS244 LEU245 ARG246 LEU247 GLY248 GLY249 ASP250 ALA251 LEU252 GLY253 LYS254 LYS255 GLY256 LYS257 PRO258 ALA259 GLU260 ILE261 VAL262 GLY263 LYS264 GLU265 ALA266 ALA267 GLN268 GLU269 LEU270 LEU271 ASP272 GLN273 LEU274 LYS275 PRO276 GLY277 HIS278 CYS279 VAL280 ASP281 LYS282 PHE283 LEU284 GLY285 ASP286 GLN287 LEU288 ILE289 PRO290 PHE291 LEU292 ALA293 PHE294 SER295 GLY296 GLY297 VAL298 ILE299 TRP300 VAL301 SER302 GLU303 ILE304 THR305 ASN306 HIS307 LEU308 LYS309 THR310 ASN311 ILE312 TRP313 VAL314 VAL315 GLU316 SER317 PHE318 LEU319 GLY320 ARG321 ILE322 PHE323 ASP324 VAL325 ASP326 GLY327 ASN328 VAL329 GLY330 GLU331 PRO332 GLY333 LYS334 ILE335 ARG336 VAL337 ILE338 ARG339 ARG340 VAL341
Nucleic acids
Unit 3 A1 C2 A3 A4 A5 A6
Unit 4 A1 C2 A3 A4 A5 A6
Ligands
Unit 5 ADN401
Unit 6 ADN401 EPE402
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany