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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY F045-092 WITH A/VICTORIA/3/1975 (H3N2) INFLUENZA HEMAGGLUTININ
Keywords IMMUNOGLOBULIN, VIRUS ATTACHMENT AND ENTRY, IMMUNE RECOGNITI PROTEIN-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4O58     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ HA1 CHAIN  A 317 2439 0
2  Protein   HEMAGGLUTININ HA2 CHAIN  B 172 1393 0
3  Protein   FAB F045-092 LIGHT CHAIN  L 213 1567 0
4  Protein   FAB F045-092 HEAVY CHAIN  H 223 1679 0
5  Ligand    C 2 0 28
6  Ligand    D 5 0 61
7  Ligand    E 2 0 28
8  Ligand   HEMAGGLUTININ HA1 CHAIN  A 7 0 46
9  Ligand   HEMAGGLUTININ HA2 CHAIN  B 4 0 29
10  Ligand   FAB F045-092 LIGHT CHAIN  L 4 0 24
11  Ligand   FAB F045-092 HEAVY CHAIN  H 4 0 20
12 Water     76 0 76
total       1029 7078 312

Proteins
Unit 1 PRO9 GLY10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASN31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASN63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 GLY78 PHE79 GLN80 ASN81 GLU82 LYS83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 ASN122 GLU123 GLY124 PHE125 ASN126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 SER137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 ASP144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 TYR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 GLN164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 SER174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 SER186 THR187 ASP188 LYS189 GLU190 GLN191 THR192 ASN193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 LYS201 VAL202 THR203 VAL204 SER205 THR206 LYS207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 VAL217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 ILE242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 GLY275 THR276 CYS277 SER278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325
Unit 2 GLY1 ILE2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 SER29 GLU30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 LEU38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 ASN49 GLY50 LYS51 LEU52 ASN53 ARG54 VAL55 ILE56 GLU57 LYS58 THR59 ASN60 GLU61 LYS62 PHE63 HIS64 GLN65 ILE66 GLU67 LYS68 GLU69 PHE70 SER71 GLU72 VAL73 GLU74 GLY75 ARG76 ILE77 GLN78 ASP79 LEU80 GLU81 LYS82 TYR83 VAL84 GLU85 ASP86 THR87 LYS88 ILE89 ASP90 LEU91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 LEU102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 THR111 ASP112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 PHE119 GLU120 LYS121 THR122 ARG123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 ASP132 MET133 GLY134 ASN135 GLY136 CYS137 PHE138 LYS139 ILE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASN146 ALA147 CYS148 ILE149 GLY150 SER151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 ASP160 VAL161 TYR162 ARG163 ASP164 GLU165 ALA166 LEU167 ASN168 ASN169 ARG170 PHE171 GLN172
Unit 3 GLN1 SER2 VAL3 LEU4 THR5 GLN6 PRO7 PRO8 SER9 ALA11 SER12 GLY13 THR14 PRO15 GLY16 GLN17 SER18 VAL19 THR20 ILE21 SER22 CYS23 SER24 GLY25 SER26 ARG27 SER27A ASN27B ILE28 GLY29 GLY30 ASN31 THR32 VAL33 ASN34 TRP35 TYR36 GLN37 HIS38 LEU39 PRO40 GLY41 MET42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 SER51 ASN52 GLN53 ARG54 SER55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 LYS66 SER67 GLY68 THR69 SER70 ALA71 SER72 LEU73 ALA74 ILE75 SER76 GLY77 LEU78 GLN79 SER80 GLU81 ASP82 ASP83 ALA84 ASP85 TYR86 TYR87 CYS88 ALA89 SER90 TRP91 ASP92 ASP93 SER94 LEU95 ASN95A GLY95B VAL96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU106A GLY107 GLN108 PRO109 LYS110 ALA111 ALA112 PRO113 SER114 VAL115 THR116 LEU117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLU124 LEU125 GLN126 ALA127 ASN128 LYS129 ALA130 THR131 LEU132 VAL133 CYS134 LEU135 ILE136 SER137 ASP138 PHE139 TYR140 PRO141 GLY142 ALA143 VAL144 THR145 VAL146 ALA147 TRP148 LYS149 ALA150 ASP151 SER152 SER153 PRO154 VAL155 LYS156 ALA157 GLY158 VAL159 GLU160 THR161 THR162 THR163 PRO164 SER165 LYS166 GLN167 SER168 ASN169 ASN170 LYS171 TYR172 ALA173 ALA174 SER175 SER176 TYR177 LEU178 SER179 LEU180 THR181 PRO182 GLU183 GLN184 TRP185 LYS186 SER187 HIS188 ARG189 SER190 TYR191 SER192 CYS193 GLN194 VAL195 THR196 HIS197 GLU198 GLY199 SER200 THR201 VAL202 GLU203 LYS204 THR205 VAL206 ALA207 PRO208 THR209
Unit 4 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 ARG23 ALA24 SER25 GLY26 THR27 PHE28 TYR29 LYS30 TYR31 ALA32 ILE33 ASN34 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 ILE51 ILE52 PRO52A PHE53 PHE54 GLY55 THR56 THR57 ASN58 TYR59 ALA60 GLN61 LYS62 PHE63 GLN64 GLY65 ARG66 LEU67 THR68 ILE69 THR70 ALA71 ASP72 GLY73 SER74 THR75 ASN76 THR77 ALA78 TYR79 MET80 GLN81 LEU82 ASP82A SER82B LEU82C ARG83 SER84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 GLY94 PRO95 SER96 ILE97 THR98 GLU99 SER100 HIS100A TYR100B CYS100C LEU100D ASP100E CYS100F ALA100G ALA100H LYS100I ASP100J TYR100K TYR100L TYR100M GLY100N LEU100O ASP101 VAL102 TRP103 GLY104 GLN105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213

Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 7 NAG1 NAG2
Unit 8 NAG503 SO4511 SO4512 SO4513 SO4514 SO4515 PEG516
Unit 9 NAG201 SO4202 SO4203 SO4204
Unit 10 SO4301 SO4302 PEG303 PEG304
Unit 11 SO4301 SO4302 SO4303 SO4304

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany