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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE THIRD RCC1-LIKE DOMAIN OF HERC1
Keywords RCC1, RLD, BETA-PROPELLER, HERC1, STRUCTURAL GENOMICS, STRUC GENOMICS CONSORTIUM, SGC, LIGASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4O2W     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   E3 UBIQUITIN-PROTEIN LIGASE HERC1  A 365 2672 0
2  Protein   E3 UBIQUITIN-PROTEIN LIGASE HERC1  B 365 2663 0
3  Protein   E3 UBIQUITIN-PROTEIN LIGASE HERC1  C 365 2642 0
4  Protein   E3 UBIQUITIN-PROTEIN LIGASE HERC1  D 364 2659 0
5  Ligand   E3 UBIQUITIN-PROTEIN LIGASE HERC1  A 9 0 9
6  Ligand   E3 UBIQUITIN-PROTEIN LIGASE HERC1  B 10 0 10
7  Ligand   E3 UBIQUITIN-PROTEIN LIGASE HERC1  C 3 0 3
8  Ligand   E3 UBIQUITIN-PROTEIN LIGASE HERC1  D 11 0 11
9 Water     673 0 673
total       2165 10636 706
Proteins
Unit 1 LYS3996 CYS3997 ASP3998 VAL3999 TYR4000 LEU4001 TRP4002 GLY4003 ALA4004 GLY4005 ARG4006 HIS4007 GLY4008 GLN4009 LEU4010 ALA4011 GLU4012 ALA4013 GLY4014 ARG4015 ASN4016 VAL4017 MET4018 VAL4019 PRO4020 ALA4021 ALA4022 ALA4023 PRO4024 SER4025 PHE4026 SER4027 GLN4028 ALA4029 GLN4030 GLN4031 VAL4032 ILE4033 CYS4034 GLY4035 GLN4036 ASN4037 CYS4038 THR4039 PHE4040 VAL4041 ILE4042 GLN4043 ALA4044 ASN4045 GLY4046 THR4047 VAL4048 LEU4049 ALA4050 CYS4051 GLY4052 GLU4053 GLY4054 SER4055 TYR4056 GLY4057 ARG4058 LEU4059 GLY4060 GLN4061 GLY4062 ASN4063 SER4064 ASP4065 ASP4066 LEU4067 HIS4068 VAL4069 LEU4070 THR4071 VAL4072 ILE4073 SER4074 ALA4075 LEU4076 GLN4077 GLY4078 PHE4079 VAL4080 VAL4081 THR4082 GLN4083 LEU4084 VAL4085 THR4086 SER4087 CYS4088 GLY4089 SER4090 ASP4091 GLY4092 HIS4093 SER4094 MET4095 ALA4096 LEU4097 THR4098 GLU4099 SER4100 GLY4101 GLU4102 VAL4103 PHE4104 SER4105 TRP4106 GLY4107 ASP4108 GLY4109 ASP4110 TYR4111 GLY4112 LYS4113 LEU4114 GLY4115 HIS4116 GLY4117 ASN4118 SER4119 ASP4120 ARG4121 GLN4122 ARG4123 ARG4124 PRO4125 ARG4126 GLN4127 ILE4128 GLU4129 ALA4130 LEU4131 GLN4132 GLY4133 GLU4134 GLU4135 VAL4136 VAL4137 GLN4138 MET4139 SER4140 CYS4141 GLY4142 PHE4143 LYS4144 HIS4145 SER4146 ALA4147 VAL4148 VAL4149 THR4150 SER4151 ASP4152 GLY4153 LYS4154 LEU4155 PHE4156 THR4157 PHE4158 GLY4159 ASN4160 GLY4161 ASP4162 TYR4163 GLY4164 ARG4165 LEU4166 GLY4167 LEU4168 GLY4169 ASN4170 THR4171 SER4172 ASN4173 LYS4174 LYS4175 LEU4176 PRO4177 GLU4178 ARG4179 VAL4180 THR4181 ALA4182 LEU4183 GLU4184 GLY4185 TYR4186 GLN4187 ILE4188 GLY4189 GLN4190 VAL4191 ALA4192 CYS4193 GLY4194 LEU4195 ASN4196 HIS4197 THR4198 LEU4199 ALA4200 VAL4201 SER4202 ALA4203 ASP4204 GLY4205 SER4206 MET4207 VAL4208 TRP4209 ALA4210 PHE4211 GLY4212 ASP4213 GLY4214 ASP4215 TYR4216 GLY4217 LYS4218 LEU4219 GLY4220 LEU4221 GLY4222 ASN4223 SER4224 THR4225 ALA4226 LYS4227 SER4228 SER4229 PRO4230 GLN4231 LYS4232 ILE4233 ASP4234 VAL4235 LEU4236 CYS4237 GLY4238 ILE4239 GLY4240 ILE4241 LYS4242 LYS4243 VAL4244 ALA4245 CYS4246 GLY4247 THR4248 GLN4249 PHE4250 SER4251 VAL4252 ALA4253 LEU4254 THR4255 LYS4256 ASP4257 GLY4258 HIS4259 VAL4260 TYR4261 THR4262 PHE4263 GLY4264 GLN4265 ASP4266 ARG4267 LEU4268 ILE4269 GLY4270 LEU4271 PRO4272 GLU4273 GLY4274 ARG4275 ALA4276 ARG4277 ASN4278 HIS4279 ASN4280 ARG4281 PRO4282 GLN4283 GLN4284 ILE4285 PRO4286 VAL4287 LEU4288 ALA4289 GLY4290 VAL4291 ILE4292 ILE4293 GLU4294 ASP4295 VAL4296 ALA4297 VAL4298 GLY4299 ALA4300 GLU4301 HIS4302 THR4303 LEU4304 ALA4305 LEU4306 ALA4307 SER4308 ASN4309 GLY4310 ASP4311 VAL4312 TYR4313 ALA4314 TRP4315 GLY4316 SER4317 ASN4318 SER4319 GLU4320 GLY4321 GLN4322 LEU4323 GLY4324 LEU4325 GLY4326 HIS4327 THR4328 ASN4329 HIS4330 VAL4331 ARG4332 GLU4333 PRO4334 THR4335 LEU4336 VAL4337 THR4338 GLY4339 LEU4340 GLN4341 GLY4342 LYS4343 ASN4344 VAL4345 ARG4346 GLN4347 ILE4348 SER4349 ALA4350 GLY4351 ARG4352 CYS4353 HIS4354 SER4355 ALA4356 ALA4357 TRP4358 THR4359 ALA4360
Unit 2 LYS3996 CYS3997 ASP3998 VAL3999 TYR4000 LEU4001 TRP4002 GLY4003 ALA4004 GLY4005 ARG4006 HIS4007 GLY4008 GLN4009 LEU4010 ALA4011 GLU4012 ALA4013 GLY4014 ARG4015 ASN4016 VAL4017 MET4018 VAL4019 PRO4020 ALA4021 ALA4022 ALA4023 PRO4024 SER4025 PHE4026 SER4027 GLN4028 ALA4029 GLN4030 GLN4031 VAL4032 ILE4033 CYS4034 GLY4035 GLN4036 ASN4037 CYS4038 THR4039 PHE4040 VAL4041 ILE4042 GLN4043 ALA4044 ASN4045 GLY4046 THR4047 VAL4048 LEU4049 ALA4050 CYS4051 GLY4052 GLU4053 GLY4054 SER4055 TYR4056 GLY4057 ARG4058 LEU4059 GLY4060 GLN4061 GLY4062 ASN4063 SER4064 ASP4065 ASP4066 LEU4067 HIS4068 VAL4069 LEU4070 THR4071 VAL4072 ILE4073 SER4074 ALA4075 LEU4076 GLN4077 GLY4078 PHE4079 VAL4080 VAL4081 THR4082 GLN4083 LEU4084 VAL4085 THR4086 SER4087 CYS4088 GLY4089 SER4090 ASP4091 GLY4092 HIS4093 SER4094 MET4095 ALA4096 LEU4097 THR4098 GLU4099 SER4100 GLY4101 GLU4102 VAL4103 PHE4104 SER4105 TRP4106 GLY4107 ASP4108 GLY4109 ASP4110 TYR4111 GLY4112 LYS4113 LEU4114 GLY4115 HIS4116 GLY4117 ASN4118 SER4119 ASP4120 ARG4121 GLN4122 ARG4123 ARG4124 PRO4125 ARG4126 GLN4127 ILE4128 GLU4129 ALA4130 LEU4131 GLN4132 GLY4133 GLU4134 GLU4135 VAL4136 VAL4137 GLN4138 MET4139 SER4140 CYS4141 GLY4142 PHE4143 LYS4144 HIS4145 SER4146 ALA4147 VAL4148 VAL4149 THR4150 SER4151 ASP4152 GLY4153 LYS4154 LEU4155 PHE4156 THR4157 PHE4158 GLY4159 ASN4160 GLY4161 ASP4162 TYR4163 GLY4164 ARG4165 LEU4166 GLY4167 LEU4168 GLY4169 ASN4170 THR4171 SER4172 ASN4173 LYS4174 LYS4175 LEU4176 PRO4177 GLU4178 ARG4179 VAL4180 THR4181 ALA4182 LEU4183 GLU4184 GLY4185 TYR4186 GLN4187 ILE4188 GLY4189 GLN4190 VAL4191 ALA4192 CYS4193 GLY4194 LEU4195 ASN4196 HIS4197 THR4198 LEU4199 ALA4200 VAL4201 SER4202 ALA4203 ASP4204 GLY4205 SER4206 MET4207 VAL4208 TRP4209 ALA4210 PHE4211 GLY4212 ASP4213 GLY4214 ASP4215 TYR4216 GLY4217 LYS4218 LEU4219 GLY4220 LEU4221 GLY4222 ASN4223 SER4224 THR4225 ALA4226 LYS4227 SER4228 SER4229 PRO4230 GLN4231 LYS4232 ILE4233 ASP4234 VAL4235 LEU4236 CYS4237 GLY4238 ILE4239 GLY4240 ILE4241 LYS4242 LYS4243 VAL4244 ALA4245 CYS4246 GLY4247 THR4248 GLN4249 PHE4250 SER4251 VAL4252 ALA4253 LEU4254 THR4255 LYS4256 ASP4257 GLY4258 HIS4259 VAL4260 TYR4261 THR4262 PHE4263 GLY4264 GLN4265 ASP4266 ARG4267 LEU4268 ILE4269 GLY4270 LEU4271 PRO4272 GLU4273 GLY4274 ARG4275 ALA4276 ARG4277 ASN4278 HIS4279 ASN4280 ARG4281 PRO4282 GLN4283 GLN4284 ILE4285 PRO4286 VAL4287 LEU4288 ALA4289 GLY4290 VAL4291 ILE4292 ILE4293 GLU4294 ASP4295 VAL4296 ALA4297 VAL4298 GLY4299 ALA4300 GLU4301 HIS4302 THR4303 LEU4304 ALA4305 LEU4306 ALA4307 SER4308 ASN4309 GLY4310 ASP4311 VAL4312 TYR4313 ALA4314 TRP4315 GLY4316 SER4317 ASN4318 SER4319 GLU4320 GLY4321 GLN4322 LEU4323 GLY4324 LEU4325 GLY4326 HIS4327 THR4328 ASN4329 HIS4330 VAL4331 ARG4332 GLU4333 PRO4334 THR4335 LEU4336 VAL4337 THR4338 GLY4339 LEU4340 GLN4341 GLY4342 LYS4343 ASN4344 VAL4345 ARG4346 GLN4347 ILE4348 SER4349 ALA4350 GLY4351 ARG4352 CYS4353 HIS4354 SER4355 ALA4356 ALA4357 TRP4358 THR4359 ALA4360
Unit 3 LYS3996 CYS3997 ASP3998 VAL3999 TYR4000 LEU4001 TRP4002 GLY4003 ALA4004 GLY4005 ARG4006 HIS4007 GLY4008 GLN4009 LEU4010 ALA4011 GLU4012 ALA4013 GLY4014 ARG4015 ASN4016 VAL4017 MET4018 VAL4019 PRO4020 ALA4021 ALA4022 ALA4023 PRO4024 SER4025 PHE4026 SER4027 GLN4028 ALA4029 GLN4030 GLN4031 VAL4032 ILE4033 CYS4034 GLY4035 GLN4036 ASN4037 CYS4038 THR4039 PHE4040 VAL4041 ILE4042 GLN4043 ALA4044 ASN4045 GLY4046 THR4047 VAL4048 LEU4049 ALA4050 CYS4051 GLY4052 GLU4053 GLY4054 SER4055 TYR4056 GLY4057 ARG4058 LEU4059 GLY4060 GLN4061 GLY4062 ASN4063 SER4064 ASP4065 ASP4066 LEU4067 HIS4068 VAL4069 LEU4070 THR4071 VAL4072 ILE4073 SER4074 ALA4075 LEU4076 GLN4077 GLY4078 PHE4079 VAL4080 VAL4081 THR4082 GLN4083 LEU4084 VAL4085 THR4086 SER4087 CYS4088 GLY4089 SER4090 ASP4091 GLY4092 HIS4093 SER4094 MET4095 ALA4096 LEU4097 THR4098 GLU4099 SER4100 GLY4101 GLU4102 VAL4103 PHE4104 SER4105 TRP4106 GLY4107 ASP4108 GLY4109 ASP4110 TYR4111 GLY4112 LYS4113 LEU4114 GLY4115 HIS4116 GLY4117 ASN4118 SER4119 ASP4120 ARG4121 GLN4122 ARG4123 ARG4124 PRO4125 ARG4126 GLN4127 ILE4128 GLU4129 ALA4130 LEU4131 GLN4132 GLY4133 GLU4134 GLU4135 VAL4136 VAL4137 GLN4138 MET4139 SER4140 CYS4141 GLY4142 PHE4143 LYS4144 HIS4145 SER4146 ALA4147 VAL4148 VAL4149 THR4150 SER4151 ASP4152 GLY4153 LYS4154 LEU4155 PHE4156 THR4157 PHE4158 GLY4159 ASN4160 GLY4161 ASP4162 TYR4163 GLY4164 ARG4165 LEU4166 GLY4167 LEU4168 GLY4169 ASN4170 THR4171 SER4172 ASN4173 LYS4174 LYS4175 LEU4176 PRO4177 GLU4178 ARG4179 VAL4180 THR4181 ALA4182 LEU4183 GLU4184 GLY4185 TYR4186 GLN4187 ILE4188 GLY4189 GLN4190 VAL4191 ALA4192 CYS4193 GLY4194 LEU4195 ASN4196 HIS4197 THR4198 LEU4199 ALA4200 VAL4201 SER4202 ALA4203 ASP4204 GLY4205 SER4206 MET4207 VAL4208 TRP4209 ALA4210 PHE4211 GLY4212 ASP4213 GLY4214 ASP4215 TYR4216 GLY4217 LYS4218 LEU4219 GLY4220 LEU4221 GLY4222 ASN4223 SER4224 THR4225 ALA4226 LYS4227 SER4228 SER4229 PRO4230 GLN4231 LYS4232 ILE4233 ASP4234 VAL4235 LEU4236 CYS4237 GLY4238 ILE4239 GLY4240 ILE4241 LYS4242 LYS4243 VAL4244 ALA4245 CYS4246 GLY4247 THR4248 GLN4249 PHE4250 SER4251 VAL4252 ALA4253 LEU4254 THR4255 LYS4256 ASP4257 GLY4258 HIS4259 VAL4260 TYR4261 THR4262 PHE4263 GLY4264 GLN4265 ASP4266 ARG4267 LEU4268 ILE4269 GLY4270 LEU4271 PRO4272 GLU4273 GLY4274 ARG4275 ALA4276 ARG4277 ASN4278 HIS4279 ASN4280 ARG4281 PRO4282 GLN4283 GLN4284 ILE4285 PRO4286 VAL4287 LEU4288 ALA4289 GLY4290 VAL4291 ILE4292 ILE4293 GLU4294 ASP4295 VAL4296 ALA4297 VAL4298 GLY4299 ALA4300 GLU4301 HIS4302 THR4303 LEU4304 ALA4305 LEU4306 ALA4307 SER4308 ASN4309 GLY4310 ASP4311 VAL4312 TYR4313 ALA4314 TRP4315 GLY4316 SER4317 ASN4318 SER4319 GLU4320 GLY4321 GLN4322 LEU4323 GLY4324 LEU4325 GLY4326 HIS4327 THR4328 ASN4329 HIS4330 VAL4331 ARG4332 GLU4333 PRO4334 THR4335 LEU4336 VAL4337 THR4338 GLY4339 LEU4340 GLN4341 GLY4342 LYS4343 ASN4344 VAL4345 ARG4346 GLN4347 ILE4348 SER4349 ALA4350 GLY4351 ARG4352 CYS4353 HIS4354 SER4355 ALA4356 ALA4357 TRP4358 THR4359 ALA4360
Unit 4 CYS3997 ASP3998 VAL3999 TYR4000 LEU4001 TRP4002 GLY4003 ALA4004 GLY4005 ARG4006 HIS4007 GLY4008 GLN4009 LEU4010 ALA4011 GLU4012 ALA4013 GLY4014 ARG4015 ASN4016 VAL4017 MET4018 VAL4019 PRO4020 ALA4021 ALA4022 ALA4023 PRO4024 SER4025 PHE4026 SER4027 GLN4028 ALA4029 GLN4030 GLN4031 VAL4032 ILE4033 CYS4034 GLY4035 GLN4036 ASN4037 CYS4038 THR4039 PHE4040 VAL4041 ILE4042 GLN4043 ALA4044 ASN4045 GLY4046 THR4047 VAL4048 LEU4049 ALA4050 CYS4051 GLY4052 GLU4053 GLY4054 SER4055 TYR4056 GLY4057 ARG4058 LEU4059 GLY4060 GLN4061 GLY4062 ASN4063 SER4064 ASP4065 ASP4066 LEU4067 HIS4068 VAL4069 LEU4070 THR4071 VAL4072 ILE4073 SER4074 ALA4075 LEU4076 GLN4077 GLY4078 PHE4079 VAL4080 VAL4081 THR4082 GLN4083 LEU4084 VAL4085 THR4086 SER4087 CYS4088 GLY4089 SER4090 ASP4091 GLY4092 HIS4093 SER4094 MET4095 ALA4096 LEU4097 THR4098 GLU4099 SER4100 GLY4101 GLU4102 VAL4103 PHE4104 SER4105 TRP4106 GLY4107 ASP4108 GLY4109 ASP4110 TYR4111 GLY4112 LYS4113 LEU4114 GLY4115 HIS4116 GLY4117 ASN4118 SER4119 ASP4120 ARG4121 GLN4122 ARG4123 ARG4124 PRO4125 ARG4126 GLN4127 ILE4128 GLU4129 ALA4130 LEU4131 GLN4132 GLY4133 GLU4134 GLU4135 VAL4136 VAL4137 GLN4138 MET4139 SER4140 CYS4141 GLY4142 PHE4143 LYS4144 HIS4145 SER4146 ALA4147 VAL4148 VAL4149 THR4150 SER4151 ASP4152 GLY4153 LYS4154 LEU4155 PHE4156 THR4157 PHE4158 GLY4159 ASN4160 GLY4161 ASP4162 TYR4163 GLY4164 ARG4165 LEU4166 GLY4167 LEU4168 GLY4169 ASN4170 THR4171 SER4172 ASN4173 LYS4174 LYS4175 LEU4176 PRO4177 GLU4178 ARG4179 VAL4180 THR4181 ALA4182 LEU4183 GLU4184 GLY4185 TYR4186 GLN4187 ILE4188 GLY4189 GLN4190 VAL4191 ALA4192 CYS4193 GLY4194 LEU4195 ASN4196 HIS4197 THR4198 LEU4199 ALA4200 VAL4201 SER4202 ALA4203 ASP4204 GLY4205 SER4206 MET4207 VAL4208 TRP4209 ALA4210 PHE4211 GLY4212 ASP4213 GLY4214 ASP4215 TYR4216 GLY4217 LYS4218 LEU4219 GLY4220 LEU4221 GLY4222 ASN4223 SER4224 THR4225 ALA4226 LYS4227 SER4228 SER4229 PRO4230 GLN4231 LYS4232 ILE4233 ASP4234 VAL4235 LEU4236 CYS4237 GLY4238 ILE4239 GLY4240 ILE4241 LYS4242 LYS4243 VAL4244 ALA4245 CYS4246 GLY4247 THR4248 GLN4249 PHE4250 SER4251 VAL4252 ALA4253 LEU4254 THR4255 LYS4256 ASP4257 GLY4258 HIS4259 VAL4260 TYR4261 THR4262 PHE4263 GLY4264 GLN4265 ASP4266 ARG4267 LEU4268 ILE4269 GLY4270 LEU4271 PRO4272 GLU4273 GLY4274 ARG4275 ALA4276 ARG4277 ASN4278 HIS4279 ASN4280 ARG4281 PRO4282 GLN4283 GLN4284 ILE4285 PRO4286 VAL4287 LEU4288 ALA4289 GLY4290 VAL4291 ILE4292 ILE4293 GLU4294 ASP4295 VAL4296 ALA4297 VAL4298 GLY4299 ALA4300 GLU4301 HIS4302 THR4303 LEU4304 ALA4305 LEU4306 ALA4307 SER4308 ASN4309 GLY4310 ASP4311 VAL4312 TYR4313 ALA4314 TRP4315 GLY4316 SER4317 ASN4318 SER4319 GLU4320 GLY4321 GLN4322 LEU4323 GLY4324 LEU4325 GLY4326 HIS4327 THR4328 ASN4329 HIS4330 VAL4331 ARG4332 GLU4333 PRO4334 THR4335 LEU4336 VAL4337 THR4338 GLY4339 LEU4340 GLN4341 GLY4342 LYS4343 ASN4344 VAL4345 ARG4346 GLN4347 ILE4348 SER4349 ALA4350 GLY4351 ARG4352 CYS4353 HIS4354 SER4355 ALA4356 ALA4357 TRP4358 THR4359 ALA4360
Ligands
Unit 5 MG4401 CL4402 CL4403 CL4404 UNX4405 UNX4406 UNX4407 UNX4408 UNX4409
Unit 6 MG4401 UNX4402 UNX4403 UNX4404 UNX4405 UNX4406 UNX4407 UNX4408 UNX4409 UNX4410
Unit 7 UNX4401 UNX4402 UNX4403
Unit 8 MG4401 CL4402 CL4403 UNX4404 UNX4405 UNX4406 UNX4407 UNX4408 UNX4409 UNX4410 UNX4411
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany