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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TCR-MR1 TERNARY COMPLEX BOUND TO 5-(2- OXOETHYLIDENEAMINO)-6-D-RIBITYLAMINOURACIL
Keywords IMMUNE COMPLEX, MR1, TCR, IG-DOMAIN, PROTEIN BINDING, SCHIFF MEMBRANE, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4NQE     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED PROTEIN  A 264 2152 0
2  Protein   BETA-2-MICROGLOBULIN  B 96 769 0
3  Protein   MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED PROTEIN  C 249 2036 0
4  Protein   TCR ALPHA  D 200 1546 0
5  Protein   TCR BETA  E 243 1903 0
6  Protein   BETA-2-MICROGLOBULIN  F 97 766 0
7  Protein   TCR ALPHA  G 189 1449 0
8  Protein   TCR BETA  H 231 1754 0
9  Ligand   MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED PROTEIN  A 1 0 21
10  Ligand   MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED PROTEIN  C 1 0 21
11 Water     888 0 888
total       2459 12375 930
Proteins
Unit 1 MET0 ARG1 THR2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 ARG9 LEU10 GLY11 VAL12 SER13 ASP14 PRO15 ILE16 HIS17 GLY18 VAL19 PRO20 GLU21 PHE22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 SER30 HIS31 PRO32 ILE33 THR34 THR35 TYR36 ASP37 SER38 VAL39 THR40 ARG41 GLN42 LYS43 GLU44 PRO45 ARG46 ALA47 PRO48 TRP49 MET50 ALA51 GLU52 ASN53 LEU54 ALA55 PRO56 ASP57 HIS58 TRP59 GLU60 ARG61 TYR62 THR63 GLN64 LEU65 LEU66 ARG67 GLY68 TRP69 GLN70 GLN71 MET72 PHE73 LYS74 VAL75 GLU76 LEU77 LYS78 ARG79 LEU80 GLN81 ARG82 HIS83 TYR84 ASN85 HIS86 SER87 GLY88 SER89 HIS90 THR91 TYR92 GLN93 ARG94 MET95 ILE96 GLY97 CYS98 GLU99 LEU100 LEU101 GLU102 ASP103 GLY104 SER105 THR106 THR107 GLY108 PHE109 LEU110 GLN111 TYR112 ALA113 TYR114 ASP115 GLY116 GLN117 ASP118 PHE119 LEU120 ILE121 PHE122 ASN123 LYS124 ASP125 THR126 LEU127 SER128 TRP129 LEU130 ALA131 VAL132 ASP133 ASN134 VAL135 ALA136 HIS137 THR138 ILE139 LYS140 GLN141 ALA142 TRP143 GLU144 ALA145 ASN146 GLN147 HIS148 GLU149 LEU150 LEU151 TYR152 GLN153 LYS154 ASN155 TRP156 LEU157 GLU158 GLU159 GLU160 CYS161 ILE162 ALA163 TRP164 LEU165 LYS166 ARG167 PHE168 LEU169 GLU170 TYR171 GLY172 LYS173 ASP174 THR175 LEU176 GLN177 ARG178 THR179 GLU180 PRO181 PRO182 LEU183 VAL184 ARG185 VAL186 ASN187 ARG188 LYS189 GLU190 THR191 PHE192 PRO193 GLY194 VAL195 THR196 ALA197 LEU198 PHE199 CYS200 LYS201 ALA202 HIS203 GLY204 PHE205 TYR206 PRO207 PRO208 GLU209 ILE210 TYR211 MET212 THR213 TRP214 MET215 LYS216 ASN217 GLY218 GLU219 GLU220 ILE221 VAL222 GLN223 GLU224 ILE225 ASP226 TYR227 GLY228 ASP229 ILE230 LEU231 PRO232 SER233 GLY234 ASP235 GLY236 THR237 TYR238 GLN239 ALA240 TRP241 ALA242 SER243 ILE244 GLU245 LEU246 LEU253 TYR254 SER255 CYS256 HIS257 VAL258 GLU259 HIS260 SER261 GLY262 VAL263 HIS264 MET265 VAL266 LEU267 GLN268 VAL269
Unit 2 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96
Unit 3 MET0 ARG1 THR2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 ARG9 LEU10 GLY11 VAL12 SER13 ASP14 PRO15 ILE16 VAL19 PRO20 GLU21 PHE22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 SER30 HIS31 PRO32 ILE33 THR34 THR35 TYR36 ASP37 SER38 VAL39 THR40 ARG41 GLN42 LYS43 GLU44 PRO45 ARG46 ALA47 PRO48 TRP49 MET50 ALA51 GLU52 ASN53 LEU54 ALA55 PRO56 ASP57 HIS58 TRP59 GLU60 ARG61 TYR62 THR63 GLN64 LEU65 LEU66 ARG67 GLY68 TRP69 GLN70 GLN71 MET72 PHE73 LYS74 VAL75 GLU76 LEU77 LYS78 ARG79 LEU80 GLN81 ARG82 HIS83 TYR84 ASN85 HIS86 SER87 GLY88 SER89 HIS90 THR91 TYR92 GLN93 ARG94 MET95 ILE96 GLY97 CYS98 GLU99 LEU100 LEU101 GLU102 ASP103 GLY104 SER105 THR106 THR107 GLY108 PHE109 LEU110 GLN111 TYR112 ALA113 TYR114 ASP115 GLY116 GLN117 ASP118 PHE119 LEU120 ILE121 PHE122 ASN123 LYS124 ASP125 THR126 LEU127 SER128 TRP129 LEU130 ALA131 VAL132 ASP133 ASN134 VAL135 ALA136 HIS137 THR138 ILE139 LYS140 GLN141 ALA142 TRP143 GLU144 ALA145 ASN146 GLN147 HIS148 GLU149 LEU150 LEU151 TYR152 GLN153 LYS154 ASN155 TRP156 LEU157 GLU158 GLU159 GLU160 CYS161 ILE162 ALA163 TRP164 LEU165 LYS166 ARG167 PHE168 LEU169 GLU170 TYR171 GLY172 LYS173 ASP174 THR175 LEU176 GLN177 ARG178 THR179 GLU180 PRO181 PRO182 LEU183 VAL184 ARG185 VAL186 ASN187 ARG188 ALA197 LEU198 PHE199 CYS200 LYS201 ALA202 HIS203 GLY204 PHE205 TYR206 PRO207 PRO208 GLU209 ILE210 TYR211 MET212 THR213 TRP214 MET215 LYS216 ASN217 GLY218 GLU219 ILE225 ASP226 TYR227 GLY228 ASP229 ILE230 LEU231 PRO232 SER233 GLY234 ASP235 GLY236 THR237 TYR238 GLN239 ALA240 TRP241 ALA242 SER243 ILE244 SER251 ASN252 LEU253 TYR254 SER255 CYS256 HIS257 VAL258 GLU259 HIS260 SER261 GLY262 VAL263 HIS264 MET265 VAL266 LEU267 GLN268 VAL269
Unit 4 GLY1 GLN2 ASN3 ILE4 ASP5 GLN6 PRO7 THR8 GLU9 MET10 THR11 ALA12 THR13 GLU14 GLY15 ALA16 ILE17 VAL18 GLN19 ILE20 ASN21 CYS22 THR23 TYR24 GLN25 THR26 SER27 GLY28 PHE29 ASN30 GLY31 LEU32 PHE33 TRP34 TYR35 GLN36 GLN37 HIS38 ALA39 GLY40 GLU41 ALA42 PRO43 THR44 PHE45 LEU46 SER47 TYR48 ASN49 VAL50 LEU51 ASP52 GLY53 LEU54 GLU55 GLU56 LYS57 GLY58 ARG59 PHE60 SER61 SER62 PHE63 LEU64 SER65 ARG66 SER67 LYS68 GLY69 TYR70 SER71 TYR72 LEU73 LEU74 LEU75 LYS76 GLU77 LEU78 GLN79 MET80 LYS81 ASP82 SER83 ALA84 SER85 TYR86 LEU87 CYS88 ALA89 VAL90 LYS91 ASP92 SER93 ASN94 TYR95 GLN96 LEU97 ILE98 TRP99 GLY100 ALA101 GLY102 THR103 LYS104 LEU105 ILE106 ILE107 LYS108 PRO109 ASP110 ILE111 GLN112 ASN113 PRO114 ASP115 PRO116 ALA117 VAL118 TYR119 GLN120 LEU121 ARG122 ASP123 SER124 LYS125 SER126 SER127 ASP128 LYS129 SER130 VAL131 CYS132 LEU133 PHE134 THR135 ASP136 PHE137 ASP138 SER139 GLN140 THR141 ASN142 VAL143 SER144 GLN145 SER146 LYS147 ASP148 SER149 ASP150 VAL151 TYR152 ILE153 THR154 ASP155 LYS156 CYS157 VAL158 LEU159 ASP160 MET161 ARG162 SER163 MET164 ASP165 PHE166 LYS167 SER168 ASN169 SER170 ALA171 VAL172 ALA173 TRP174 SER175 ASN176 LYS177 SER178 ASP179 PHE180 ALA181 CYS182 ALA183 ASN184 ALA185 PHE186 ASN187 ASN188 SER189 ILE190 ILE191 PRO192 GLU193 ASP194 THR195 PHE196 PHE197 PRO198 SER199 PRO200
Unit 5 ALA2 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 PHE10 GLN11 VAL12 LEU13 LYS14 THR15 GLY16 GLN17 SER18 MET19 THR20 LEU21 GLN22 CYS23 ALA24 GLN25 ASP26 MET27 ASN28 HIS29 ASN30 SER31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 MET41 GLY42 LEU43 ARG44 LEU45 ILE46 TYR47 TYR48 SER49 ALA50 SER51 GLU52 GLY53 THR54 THR55 ASP56 LYS57 GLY58 GLU59 VAL60 PRO61 ASN62 GLY63 TYR64 ASN65 VAL66 SER67 ARG68 LEU69 ASN70 LYS71 ARG72 GLU73 PHE74 SER75 LEU76 ARG77 LEU78 GLU79 SER80 ALA81 ALA82 PRO83 SER84 GLN85 THR86 SER87 VAL88 TYR89 PHE90 CYS91 ALA92 SER93 SER94 VAL95 TRP96 THR97 GLY98 GLU99 GLY100 SER101 GLY102 GLU103 LEU104 PHE105 PHE106 GLY107 GLU108 GLY109 SER110 ARG111 LEU112 THR113 VAL114 LEU115 GLU116 ASP117 LEU118 LYS119 ASN120 VAL121 PHE122 PRO123 PRO124 GLU125 VAL126 ALA127 VAL128 PHE129 GLU130 PRO131 SER132 GLU133 ALA134 GLU135 ILE136 SER137 HIS138 THR139 GLN140 LYS141 ALA142 THR143 LEU144 VAL145 CYS146 LEU147 ALA148 THR149 GLY150 PHE151 TYR152 PRO153 ASP154 HIS155 VAL156 GLU157 LEU158 SER159 TRP160 TRP161 VAL162 ASN163 GLY164 LYS165 GLU166 VAL167 HIS168 SER169 GLY170 VAL171 CYS172 THR173 ASP174 PRO175 GLN176 PRO177 LEU178 LYS179 GLU180 GLN181 PRO182 ALA183 LEU184 ASN185 ASP186 SER187 ARG188 TYR189 ALA190 LEU191 SER192 SER193 ARG194 LEU195 ARG196 VAL197 SER198 ALA199 THR200 PHE201 TRP202 GLN203 ASN204 PRO205 ARG206 ASN207 HIS208 PHE209 ARG210 CYS211 GLN212 VAL213 GLN214 PHE215 TYR216 GLY217 LEU218 SER219 GLU220 ASN221 ASP222 GLU223 TRP224 THR225 GLN226 ASP227 ARG228 ALA229 LYS230 PRO231 VAL232 THR233 GLN234 ILE235 VAL236 SER237 ALA238 GLU239 ALA240 TRP241 GLY242 ARG243 ALA244
Unit 6 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97
Unit 7 GLY1 GLN2 ASN3 ILE4 ASP5 GLN6 PRO7 THR8 GLU9 MET10 THR11 ALA12 THR13 GLU14 GLY15 ALA16 ILE17 VAL18 GLN19 ILE20 ASN21 CYS22 THR23 TYR24 GLN25 THR26 SER27 GLY28 PHE29 ASN30 GLY31 LEU32 PHE33 TRP34 TYR35 GLN36 GLN37 HIS38 ALA39 GLY40 GLU41 ALA42 PRO43 THR44 PHE45 LEU46 SER47 TYR48 ASN49 VAL50 LEU51 ASP52 GLY53 LEU54 GLU55 GLU56 LYS57 GLY58 ARG59 PHE60 SER61 SER62 PHE63 LEU64 SER65 ARG66 SER67 LYS68 GLY69 TYR70 SER71 TYR72 LEU73 LEU74 LEU75 LYS76 GLU77 LEU78 GLN79 MET80 LYS81 ASP82 SER83 ALA84 SER85 TYR86 LEU87 CYS88 ALA89 VAL90 LYS91 ASP92 SER93 ASN94 TYR95 GLN96 LEU97 ILE98 TRP99 GLY100 ALA101 GLY102 THR103 LYS104 LEU105 ILE106 ILE107 LYS108 PRO109 ASP110 ILE111 GLN112 ASN113 PRO114 ASP115 PRO116 ALA117 VAL118 TYR119 GLN120 LEU121 ARG122 SER130 VAL131 CYS132 LEU133 PHE134 THR135 ASP136 PHE137 ASP138 SER139 GLN140 THR141 ASN142 VAL143 SER144 GLN145 SER146 LYS147 ASP148 SER149 ASP150 VAL151 TYR152 ILE153 THR154 ASP155 LYS156 CYS157 VAL158 LEU159 ASP160 MET161 ARG162 SER163 MET164 ASP165 PHE166 LYS167 SER168 ASN169 SER170 ALA171 VAL172 ALA173 TRP174 SER175 ASN176 ASP179 PHE180 ALA181 CYS182 ALA183 ASN184 ALA185 PHE186 ASN187 ASN188 SER189 ILE190 ILE191 PRO192 GLU193 ASP194 THR195 PHE196 PHE197 PRO198
Unit 8 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 PHE10 GLN11 VAL12 LEU13 LYS14 THR15 GLY16 GLN17 SER18 MET19 THR20 LEU21 GLN22 CYS23 ALA24 GLN25 ASP26 MET27 ASN28 HIS29 ASN30 SER31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 MET41 GLY42 LEU43 ARG44 LEU45 ILE46 TYR47 TYR48 SER49 ALA50 SER51 GLU52 GLY53 THR54 THR55 ASP56 LYS57 GLY58 GLU59 VAL60 PRO61 ASN62 GLY63 TYR64 ASN65 VAL66 SER67 ARG68 LEU69 ASN70 LYS71 ARG72 GLU73 PHE74 SER75 LEU76 ARG77 LEU78 GLU79 SER80 ALA81 ALA82 PRO83 SER84 GLN85 THR86 SER87 VAL88 TYR89 PHE90 CYS91 ALA92 SER93 SER94 VAL95 TRP96 THR97 GLY98 GLU99 GLY100 SER101 GLY102 GLU103 LEU104 PHE105 PHE106 GLY107 GLU108 GLY109 SER110 ARG111 LEU112 THR113 VAL114 LEU115 GLU116 ASP117 LEU118 LYS119 ASN120 VAL121 PHE122 PRO123 PRO124 GLU125 VAL126 ALA127 VAL128 PHE129 GLU130 PRO131 SER132 GLU133 ALA134 GLU135 ILE136 SER137 HIS138 THR139 GLN140 LYS141 ALA142 THR143 LEU144 VAL145 CYS146 LEU147 ALA148 THR149 GLY150 PHE151 TYR152 PRO153 ASP154 HIS155 VAL156 GLU157 LEU158 SER159 TRP160 TRP161 VAL162 ASN163 GLY164 LYS165 GLU166 VAL167 HIS168 SER169 GLY170 VAL171 CYS172 THR173 ASP174 PRO175 GLN176 PRO177 LEU178 LYS179 GLU180 GLN181 PRO182 ALA183 LEU184 ASN185 ASP186 SER187 ARG188 TYR189 ALA190 LEU191 SER192 SER193 ARG194 LEU195 ARG196 VAL197 SER198 ALA199 THR200 PHE201 TRP202 GLN203 ARG210 CYS211 GLN212 VAL213 GLN214 PHE215 TYR216 GLY217 LEU218 SER219 GLU220 ASN221 ASP222 GLU223 TRP224 THR225 GLN226 ASP227 ARG228 ALA229 LYS230 PRO231 VAL232 THR233 GLN234 ILE235 VAL236 SER237 ALA238 GLU239
Ligands
Unit 9 2L4301
Unit 10 2L4301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany