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Title | CRYSTAL STRUCTURE OF HUMAN INTERLEUKIN 6 IN COMPLEX WITH A M NUCLEOTIDE APTAMER (SOMAMER SL1025), FORM 2 | |
Keywords | SELEX, SOMAMER, CYTOKINE-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4NI9 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | B | 32 | 341 | 428 | |
2 | Protein | INTERLEUKIN-6 | A | 144 | 1108 | 0 |
3 | Protein | INTERLEUKIN-6 | C | 148 | 1123 | 0 |
4 | RNA | D | 32 | 341 | 428 | |
5 | Ligand | SOMAMER SL1025 | B | 2 | 0 | 2 |
6 | Water | 22 | 0 | 22 | ||
total | 380 | 2913 | 880 |
Unit 2 | PRO14 HIS15 ARG16 GLN17 PRO18 LEU19 THR20 SER21 SER22 GLU23 ARG24 ILE25 ASP26 LYS27 GLN28 ILE29 ARG30 TYR31 ILE32 LEU33 ASP34 GLY35 ILE36 SER37 ALA38 LEU39 ARG40 LYS41 GLU42 THR43 ASN61 LEU62 ASN63 LEU64 PRO65 LYS66 MET67 ALA68 GLU69 LYS70 ASP71 GLY72 CYS73 PHE74 GLN75 SER76 GLY77 PHE78 ASN79 GLU80 GLU81 THR82 CYS83 LEU84 VAL85 LYS86 ILE87 ILE88 THR89 GLY90 LEU91 LEU92 GLU93 PHE94 GLU95 VAL96 TYR97 LEU98 GLU99 TYR100 LEU101 GLN102 ASN103 ARG104 PHE105 GLU106 SER107 SER108 GLU109 GLU110 GLN111 ALA112 ARG113 ALA114 VAL115 GLN116 MET117 SER118 THR119 LYS120 VAL121 LEU122 ILE123 GLN124 PHE125 LEU126 GLN127 LYS128 LYS129 ALA130 PRO141 THR142 THR143 ASN144 ALA145 SER146 LEU147 LEU148 THR149 LYS150 LEU151 GLN152 ALA153 GLN154 ASN155 GLN156 TRP157 LEU158 GLN159 ASP160 MET161 THR162 THR163 HIS164 LEU165 ILE166 LEU167 ARG168 SER169 PHE170 LYS171 GLU172 PHE173 LEU174 GLN175 SER176 SER177 LEU178 ARG179 ALA180 LEU181 ARG182 GLN183 MET184 |
Unit 3 | ARG16 GLN17 PRO18 LEU19 THR20 SER21 SER22 GLU23 ARG24 ILE25 ASP26 LYS27 GLN28 ILE29 ARG30 TYR31 ILE32 LEU33 ASP34 GLY35 ILE36 SER37 ALA38 LEU39 ARG40 LYS41 GLU42 THR43 ASN60 ASN61 LEU62 ASN63 LEU64 PRO65 LYS66 MET67 ALA68 GLU69 LYS70 ASP71 GLY72 CYS73 PHE74 GLN75 SER76 GLY77 PHE78 ASN79 GLU80 GLU81 THR82 CYS83 LEU84 VAL85 LYS86 ILE87 ILE88 THR89 GLY90 LEU91 LEU92 GLU93 PHE94 GLU95 VAL96 TYR97 LEU98 GLU99 TYR100 LEU101 GLN102 ASN103 ARG104 PHE105 GLU106 SER107 SER108 GLU109 GLU110 GLN111 ALA112 ARG113 ALA114 VAL115 GLN116 MET117 SER118 THR119 LYS120 VAL121 LEU122 ILE123 GLN124 PHE125 LEU126 GLN127 LYS128 LYS129 ALA130 ILE136 THR137 THR138 PRO139 ASP140 PRO141 THR142 THR143 ASN144 ALA145 SER146 LEU147 LEU148 THR149 LYS150 LEU151 GLN152 ALA153 GLN154 ASN155 GLN156 TRP157 LEU158 GLN159 ASP160 MET161 THR162 THR163 HIS164 LEU165 ILE166 LEU167 ARG168 SER169 PHE170 LYS171 GLU172 PHE173 LEU174 GLN175 SER176 SER177 LEU178 ARG179 ALA180 LEU181 ARG182 GLN183 MET184 |
Unit 1 | DG1 DG2 OMC3 DA4 DG5 OMG6 DUZ7 DUZ8 UPE9 DG10 DG11 2JU12 DA13 DUZ14 DUZ15 A2M16 DA17 DC18 A2M19 OMC20 DG21 DUZ22 DUZ23 DA24 DA25 DG26 DUZ27 OMC28 DG29 DUZ30 DG31 DG32 |
Unit 4 | DG1 DG2 OMC3 DA4 DG5 OMG6 DUZ7 DUZ8 UPE9 DG10 DG11 2JU12 DA13 DUZ14 DUZ15 A2M16 DA17 DC18 A2M19 OMC20 DG21 DUZ22 DUZ23 DA24 DA25 DG26 DUZ27 OMC28 DG29 DUZ30 DG31 DG32 |
Unit 5 | NA101 NA102 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |