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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSET COMPLEX WITH 15-MER SIRNA HAVING 5'-PUUU AND UU-3' ENDS (2. ANGSTROM RESOLUTION)
Keywords PAZ DOMAIN, PLATFORM DOMAIN, CONNECTOR HELIX, SIRNA, RNASE I DOMAIN, ENDORIBONUCLEASE, PRE-MIRNA, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4NH6     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENDORIBONUCLEASE DICER  A 272 2196 0
2  RNA    B 15 307 0
3 Water     17 0 17
total       304 2503 17

Proteins
Unit 1 ASP755 GLN756 PRO757 CYS758 TYR759 LEU760 TYR761 VAL762 ILE763 GLY764 MET765 VAL766 LEU767 THR768 THR769 PRO770 LEU771 PRO772 ASP773 GLU774 LEU775 ASN776 PHE777 ARG778 ARG779 ARG780 LYS781 LEU782 TYR783 PRO784 PRO785 GLU786 ASP787 THR788 THR789 ARG790 CYS791 PHE792 GLY793 ILE794 LEU795 THR796 ALA797 LYS798 PRO799 ILE800 PRO801 GLN802 ILE803 PRO804 HIS805 PHE806 PRO807 VAL808 TYR809 THR810 ARG811 SER812 GLY813 GLU814 VAL815 THR816 ILE817 SER818 ILE819 GLU820 LEU821 ALA822 ALA823 SER824 GLY825 PHE826 MET827 LEU828 SER829 LEU830 GLN831 MET832 LEU833 GLU834 LEU835 ILE836 THR837 ARG838 LEU839 HIS840 GLN841 TYR842 ILE843 PHE844 SER845 HIS846 ILE847 LEU848 ARG849 LEU850 GLU851 ALA865 TYR866 CYS867 VAL868 LEU869 PRO870 LEU871 ASN872 VAL873 VAL874 THR879 LEU880 ASP881 ILE882 ASP883 PHE884 LYS885 PHE886 MET887 GLU888 ASP889 ILE890 GLU891 LYS892 SER893 GLU894 ALA895 ARG896 ILE897 GLY898 ILE899 PRO900 SER901 THR902 LYS903 TYR904 THR905 LYS906 GLU907 THR908 PRO909 PHE910 VAL911 PHE912 LYS913 LEU914 GLU915 ASP916 TYR917 GLN918 ASP919 ALA920 VAL921 ILE922 ILE923 PRO924 ARG925 TYR926 ARG927 ASN928 PHE929 ASP930 GLN931 PRO932 HIS933 ARG934 PHE935 TYR936 VAL937 ALA938 ASP939 VAL940 TYR941 THR942 ASP943 LEU944 THR945 PRO946 LEU947 SER948 LYS949 PHE950 PRO951 SER952 PRO953 GLU954 TYR955 GLU956 THR957 PHE958 ALA959 GLU960 TYR961 TYR962 LYS963 THR964 LYS965 TYR966 ASN967 LEU968 ASP969 LEU970 THR971 ASN972 LEU973 ASN974 GLN975 PRO976 LEU977 LEU978 ASP979 VAL980 ASP981 HIS982 THR983 SER984 SER985 ARG986 LEU987 ASN988 LEU989 LEU990 THR991 PRO992 ARG993 HIS994 SER1004 SER1005 ALA1006 GLU1007 LYS1008 ARG1009 LYS1010 ALA1011 LYS1012 TRP1013 GLU1014 SER1015 LEU1016 GLN1017 ASN1018 LYS1019 GLN1020 ILE1021 LEU1022 VAL1023 PRO1024 GLU1025 LEU1026 CYS1027 ALA1028 ILE1029 HIS1030 PRO1031 ILE1032 PRO1033 ALA1034 SER1035 LEU1036 TRP1037 ARG1038 LYS1039 ALA1040 VAL1041 CYS1042 LEU1043 PRO1044 SER1045 ILE1046 LEU1047 TYR1048 ARG1049 LEU1050 HIS1051 CYS1052

Nucleic acids
Unit 2 U1 U2 U3 G4 C5 G6 A7 A8 U9 U10 C11 G12 C13 U14 U15

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany