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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSET COMPLEX WITH 12-MER SIRNA HAVING 5'-P AND UU-3' ENDS (1.95 RESOLUTION)
Keywords PAZ DOMAIN, PLATFORM DOMAIN, CONNECTOR HELIX, SIRNA, RNASE I DOMAIN, ENDORIBONUCLEASE, PRE-MIRNA, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4NGD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENDORIBONUCLEASE DICER  A 280 4553 0
2  RNA    B 12 383 0
3  Ligand   ENDORIBONUCLEASE DICER  A 4 0 44
4 Water     210 0 210
total       506 4936 254
Proteins
Unit 1 GLN756 PRO757 CYS758 TYR759 LEU760 TYR761 VAL762 ILE763 GLY764 MET765 VAL766 LEU767 THR768 THR769 PRO770 LEU771 PRO772 ASP773 GLU774 LEU775 ASN776 PHE777 ARG778 ARG779 ARG780 LYS781 LEU782 TYR783 PRO784 PRO785 GLU786 ASP787 THR788 THR789 ARG790 CYS791 PHE792 GLY793 ILE794 LEU795 THR796 ALA797 LYS798 PRO799 ILE800 PRO801 GLN802 ILE803 PRO804 HIS805 PHE806 PRO807 VAL808 TYR809 THR810 ARG811 SER812 GLY813 GLU814 VAL815 THR816 ILE817 SER818 ILE819 GLU820 LEU821 ALA822 ALA823 SER824 GLY825 PHE826 MET827 LEU828 SER829 LEU830 GLN831 MET832 LEU833 GLU834 LEU835 ILE836 THR837 ARG838 LEU839 HIS840 GLN841 TYR842 ILE843 PHE844 SER845 HIS846 ILE847 LEU848 ARG849 LEU850 GLU851 LYS852 PRO853 ALA854 LEU855 ALA865 TYR866 CYS867 VAL868 LEU869 PRO870 LEU871 ASN872 VAL873 VAL874 SER877 SER878 THR879 LEU880 ASP881 ILE882 ASP883 PHE884 LYS885 PHE886 MET887 GLU888 ASP889 ILE890 GLU891 LYS892 SER893 GLU894 ALA895 ARG896 ILE897 GLY898 ILE899 PRO900 SER901 THR902 LYS903 TYR904 THR905 LYS906 GLU907 THR908 PRO909 PHE910 VAL911 PHE912 LYS913 LEU914 GLU915 ASP916 TYR917 GLN918 ASP919 ALA920 VAL921 ILE922 ILE923 PRO924 ARG925 TYR926 ARG927 ASN928 PHE929 ASP930 GLN931 PRO932 HIS933 ARG934 PHE935 TYR936 VAL937 ALA938 ASP939 VAL940 TYR941 THR942 ASP943 LEU944 THR945 PRO946 LEU947 SER948 LYS949 PHE950 PRO951 SER952 PRO953 GLU954 TYR955 GLU956 THR957 PHE958 ALA959 GLU960 TYR961 TYR962 LYS963 THR964 LYS965 TYR966 ASN967 LEU968 ASP969 LEU970 THR971 ASN972 LEU973 ASN974 GLN975 PRO976 LEU977 LEU978 ASP979 VAL980 ASP981 HIS982 THR983 SER984 SER985 ARG986 LEU987 ASN988 LEU989 LEU990 THR991 PRO992 ARG993 HIS994 LEU1002 PRO1003 LEU1004 SER1005 SER1006 ALA1007 GLU1008 LYS1009 ARG1010 LYS1011 ALA1012 LYS1013 TRP1014 GLU1015 SER1016 LEU1017 GLN1018 ASN1019 LYS1020 GLN1021 ILE1022 LEU1023 VAL1024 PRO1025 GLU1026 LEU1027 CYS1028 ALA1029 ILE1030 HIS1031 PRO1032 ILE1033 PRO1034 ALA1035 SER1036 LEU1037 TRP1038 ARG1039 LYS1040 ALA1041 VAL1042 CYS1043 LEU1044 PRO1045 SER1046 ILE1047 LEU1048 TYR1049 ARG1050 LEU1051 HIS1052 CYS1053
Nucleic acids
Unit 2 G1 C2 G3 A4 A5 U6 U7 C8 G9 C10 U11 U12
Ligands
Unit 3 SO41101 SO41102 PEG1103 PEG1104
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany