4NBJ - Sequence, Chains, Asymmetric and Biological Units

• Title: D-AMINOACYL-TRNA DEACYLASE (DTD) FROM PLASMODIUM FALCIPARUM WITH D-TYROSYL-3'-AMINOADENOSINE AT 2.20 ANGSTROM RESOLUTIO
• Keywords: DTD, DEACYLASE, DTD-LIKE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4NBJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	A	154	1273	0
2	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	B	154	1270	0
3	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	C	152	1257	0
4	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	D	154	1270	0
5	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	E	152	1257	0
6	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	F	153	1264	0
7	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	G	151	1248	0
8	Protein	D-TYROSYL-TRNA(TYR) DEACYLASE	H	152	1257	0
9	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	A	1	0	31
10	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	B	1	0	31
11	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	C	1	0	31
12	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	D	1	0	31
13	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	E	1	0	31
14	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	F	1	0	31
15	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	G	1	0	31
16	Ligand	D-TYROSYL-TRNA(TYR) DEACYLASE	H	1	0	31
17	Water			375	0	375
total				1605	10096	623

Proteins

Unit 1	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 18 ASN 19 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160 ASN 161
Unit 2	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 26 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160 ASN 161 LEU 162
Unit 3	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 26 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160
Unit 4	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 26 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160 ASN 161 LEU 162
Unit 5	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 26 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160
Unit 6	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160 ASN 161 LEU 162
Unit 7	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160 ASN 161 LEU 162
Unit 8	MET 1 ARG 2 VAL 3 VAL 4 ILE 5 GLN 6 ARG 7 VAL 8 LYS 9 GLY 10 ALA 11 ILE 12 LEU 13 SER 14 VAL 15 ARG 16 LYS 17 GLU 26 LEU 27 GLU 28 ILE 29 ILE 30 SER 31 GLU 32 ILE 33 LYS 34 ASN 35 GLY 36 LEU 37 ILE 38 CYS 39 PHE 40 LEU 41 GLY 42 ILE 43 HIS 44 LYS 45 ASN 46 ASP 47 THR 48 TRP 49 GLU 50 ASP 51 ALA 52 LEU 53 TYR 54 ILE 55 ILE 56 ARG 57 LYS 58 CYS 59 LEU 60 ASN 61 LEU 62 ARG 63 LEU 64 TRP 65 ASN 66 ASN 67 ASP 68 ASN 69 LYS 70 THR 71 TRP 72 ASP 73 LYS 74 ASN 75 VAL 76 LYS 77 ASP 78 LEU 79 ASN 80 TYR 81 GLU 82 LEU 83 LEU 84 ILE 85 VAL 86 SER 87 GLN 88 PHE 89 THR 90 LEU 91 PHE 92 GLY 93 ASN 94 THR 95 LYS 96 LYS 97 GLY 98 ASN 99 LYS 100 PRO 101 ASP 102 PHE 103 HIS 104 LEU 105 ALA 106 LYS 107 GLU 108 PRO 109 ASN 110 GLU 111 ALA 112 LEU 113 ILE 114 PHE 115 TYR 116 ASN 117 LYS 118 ILE 119 ILE 120 ASP 121 GLU 122 PHE 123 LYS 124 LYS 125 GLN 126 TYR 127 ASN 128 ASP 129 ASP 130 LYS 131 ILE 132 LYS 133 ILE 134 GLY 135 LYS 136 PHE 137 GLY 138 ASN 139 TYR 140 MET 141 ASN 142 ILE 143 ASP 144 VAL 145 THR 146 ASN 147 ASP 148 GLY 149 PRO 150 VAL 151 THR 152 ILE 153 TYR 154 ILE 155 ASP 156 THR 157 HIS 158 ASP 159 ILE 160

Ligands

Unit 9	D3Y 201
Unit 10	D3Y 201
Unit 11	D3Y 201
Unit 12	D3Y 201
Unit 13	D3Y 201
Unit 14	D3Y 201
Unit 15	D3Y 201
Unit 16	D3Y 201