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Sequence, Chains, Asymmetric and Biological Units

Title CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PRO COMPLEX WITH CAPPED RNA FRAGMENT
Keywords METHYLTRANSFERASE, MRNA CAP METHYLATION, CAPPED MRNA, TRANSF COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4N48     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 401 3192 0
2  Protein    B 405 3219 0
3  DNA/RNA    D 4 66 0
4  RNA    G 4 82 0
5  Ligand    A 1 0 27
6  Ligand    B 1 0 27
7  Ligand   CAPPED RNA  D 1 0 32
8  Ligand   CAPPED RNA  G 1 0 32
9 Water     130 0 130
total       948 6559 248
Proteins
Unit 1 VAL141 ASP142 TRP143 ARG144 ASP145 GLU146 PRO147 GLU148 PRO149 SER150 ALA151 CYS152 GLU153 GLN154 VAL155 SER156 TRP157 PHE158 PRO159 GLU160 CYS161 THR162 THR163 GLU164 ILE165 PRO166 ASP167 THR168 GLN169 GLU170 MET171 SER172 ASP173 TRP174 MET175 VAL176 VAL177 GLY178 LYS179 ARG180 LYS181 MET182 ILE183 ILE184 GLU185 ASP186 GLU187 THR188 GLU189 PHE190 CYS191 GLY192 GLU193 GLU194 LEU195 LEU196 HIS197 SER198 VAL199 LEU200 GLN201 CYS202 LYS203 SER204 VAL205 PHE206 ASP207 VAL208 LEU209 ASP210 GLY211 GLU212 GLU213 MET214 ARG215 ARG216 ALA217 ARG218 THR219 ARG220 ALA221 ASN222 PRO223 TYR224 GLU225 MET226 ILE227 ARG228 GLY229 VAL230 PHE231 PHE232 LEU233 ASN234 ARG235 ALA236 ALA237 MET238 LYS239 MET240 ALA241 ASN242 MET243 ASP244 PHE245 VAL246 PHE247 ASP248 ARG249 MET250 PHE251 THR252 ASN253 PRO254 ARG255 ASP256 SER257 TYR258 GLY259 LYS260 PRO261 LEU262 VAL263 LYS264 ASP265 ARG266 GLU269 LEU270 LEU271 TYR272 PHE273 ALA274 ASP275 VAL276 CYS277 ALA278 GLY279 PRO280 GLY281 GLY282 PHE283 SER284 GLU285 TYR286 VAL287 LEU288 TRP289 ARG290 LYS291 LYS292 TRP293 HIS294 ALA295 LYS296 GLY297 PHE298 GLY299 MET300 THR301 LEU302 LYS303 GLY304 PRO305 ASN306 ASP307 PHE308 LYS309 LEU310 GLU311 ASP312 PHE313 SER318 GLU319 LEU320 PHE321 GLU322 PRO323 TYR324 TYR325 GLY326 GLU327 GLY328 GLY329 ILE330 ASP331 GLY332 ASP333 GLY334 ASP335 ILE336 THR337 ARG338 PRO339 GLU340 ASN341 ILE342 SER343 ALA344 PHE345 ARG346 ASN347 PHE348 VAL349 LEU350 ASP351 ASN352 THR353 ASP354 ARG355 LYS356 GLY357 VAL358 HIS359 PHE360 LEU361 MET362 ALA363 ASP364 GLY365 GLY366 PHE367 SER368 VAL369 GLU370 GLY371 GLN372 GLU373 ASN374 LEU375 GLN376 GLU377 ILE378 LEU379 SER380 LYS381 GLN382 LEU383 LEU384 LEU385 CYS386 GLN387 PHE388 LEU389 MET390 ALA391 LEU392 SER393 ILE394 VAL395 ARG396 THR397 GLY398 GLY399 HIS400 PHE401 ILE402 CYS403 LYS404 THR405 PHE406 ASP407 LEU408 PHE409 THR410 PRO411 PHE412 SER413 VAL414 GLY415 LEU416 VAL417 TYR418 LEU419 LEU420 TYR421 CYS422 CYS423 PHE424 GLU425 ARG426 VAL427 CYS428 LEU429 PHE430 LYS431 PRO432 ILE433 THR434 SER435 ARG436 PRO437 ALA438 ASN439 SER440 GLU441 ARG442 TYR443 VAL444 VAL445 CYS446 LYS447 GLY448 LEU449 LYS450 VAL451 GLY452 ILE453 ASP454 ASP455 VAL456 ARG457 ASP458 TYR459 LEU460 PHE461 ALA462 VAL463 ASN464 ILE465 LYS466 LEU467 ASN468 GLN469 LEU470 ARG471 ASN472 THR473 ASP474 SER475 ASP476 VAL477 ASN478 LEU479 VAL480 VAL481 PRO482 LEU483 GLU484 VAL485 ILE486 LYS487 GLY488 ASP489 HIS490 GLU491 PHE492 THR493 ASP494 TYR495 MET496 ILE497 ARG498 SER499 ASN500 GLU501 SER502 HIS503 CYS504 SER505 LEU506 GLN507 ILE508 LYS509 ALA510 LEU511 ALA512 LYS513 ILE514 HIS515 ALA516 PHE517 VAL518 GLN519 ASP520 THR521 THR522 LEU523 SER524 GLU525 PRO526 ARG527 GLN528 ALA529 GLU530 ILE531 ARG532 LYS533 GLU534 CYS535 LEU536 ARG537 LEU538 TRP539 GLY540 ILE541 PRO542 ASP543 GLN544 ALA545 ARG546 VAL547
Unit 2 VAL141 ASP142 TRP143 ARG144 ASP145 GLU146 PRO147 GLU148 PRO149 SER150 ALA151 CYS152 GLU153 GLN154 VAL155 SER156 TRP157 PHE158 PRO159 GLU160 CYS161 THR162 THR163 GLU164 ILE165 PRO166 ASP167 THR168 GLN169 GLU170 MET171 SER172 ASP173 TRP174 MET175 VAL176 VAL177 GLY178 LYS179 ARG180 LYS181 MET182 ILE183 ILE184 GLU185 ASP186 GLU187 THR188 GLU189 PHE190 CYS191 GLY192 GLU193 GLU194 LEU195 LEU196 HIS197 SER198 VAL199 LEU200 GLN201 CYS202 LYS203 SER204 VAL205 PHE206 ASP207 VAL208 LEU209 ASP210 GLY211 GLU212 GLU213 MET214 ARG215 ARG216 ALA217 ARG218 THR219 ARG220 ALA221 ASN222 PRO223 TYR224 GLU225 MET226 ILE227 ARG228 GLY229 VAL230 PHE231 PHE232 LEU233 ASN234 ARG235 ALA236 ALA237 MET238 LYS239 MET240 ALA241 ASN242 MET243 ASP244 PHE245 VAL246 PHE247 ASP248 ARG249 MET250 PHE251 THR252 ASN253 PRO254 ARG255 ASP256 SER257 TYR258 GLY259 LYS260 PRO261 LEU262 VAL263 LYS264 ASP265 ARG266 GLU269 LEU270 LEU271 TYR272 PHE273 ALA274 ASP275 VAL276 CYS277 ALA278 GLY279 PRO280 GLY281 GLY282 PHE283 SER284 GLU285 TYR286 VAL287 LEU288 TRP289 ARG290 LYS291 LYS292 TRP293 HIS294 ALA295 LYS296 GLY297 PHE298 GLY299 MET300 THR301 LEU302 LYS303 GLY304 PRO305 ASN306 ASP307 PHE308 LYS309 LEU310 GLU311 ASP312 PHE313 TYR314 SER315 ALA316 SER317 SER318 GLU319 LEU320 PHE321 GLU322 PRO323 TYR324 TYR325 GLY326 GLU327 GLY328 GLY329 ILE330 ASP331 GLY332 ASP333 GLY334 ASP335 ILE336 THR337 ARG338 PRO339 GLU340 ASN341 ILE342 SER343 ALA344 PHE345 ARG346 ASN347 PHE348 VAL349 LEU350 ASP351 ASN352 THR353 ASP354 ARG355 LYS356 GLY357 VAL358 HIS359 PHE360 LEU361 MET362 ALA363 ASP364 GLY365 GLY366 PHE367 SER368 VAL369 GLU370 GLY371 GLN372 GLU373 ASN374 LEU375 GLN376 GLU377 ILE378 LEU379 SER380 LYS381 GLN382 LEU383 LEU384 LEU385 CYS386 GLN387 PHE388 LEU389 MET390 ALA391 LEU392 SER393 ILE394 VAL395 ARG396 THR397 GLY398 GLY399 HIS400 PHE401 ILE402 CYS403 LYS404 THR405 PHE406 ASP407 LEU408 PHE409 THR410 PRO411 PHE412 SER413 VAL414 GLY415 LEU416 VAL417 TYR418 LEU419 LEU420 TYR421 CYS422 CYS423 PHE424 GLU425 ARG426 VAL427 CYS428 LEU429 PHE430 LYS431 PRO432 ILE433 THR434 SER435 ARG436 PRO437 ALA438 ASN439 SER440 GLU441 ARG442 TYR443 VAL444 VAL445 CYS446 LYS447 GLY448 LEU449 LYS450 VAL451 GLY452 ILE453 ASP454 ASP455 VAL456 ARG457 ASP458 TYR459 LEU460 PHE461 ALA462 VAL463 ASN464 ILE465 LYS466 LEU467 ASN468 GLN469 LEU470 ARG471 ASN472 THR473 ASP474 SER475 ASP476 VAL477 ASN478 LEU479 VAL480 VAL481 PRO482 LEU483 GLU484 VAL485 ILE486 LYS487 GLY488 ASP489 HIS490 GLU491 PHE492 THR493 ASP494 TYR495 MET496 ILE497 ARG498 SER499 ASN500 GLU501 SER502 HIS503 CYS504 SER505 LEU506 GLN507 ILE508 LYS509 ALA510 LEU511 ALA512 LYS513 ILE514 HIS515 ALA516 PHE517 VAL518 GLN519 ASP520 THR521 THR522 LEU523 SER524 GLU525 PRO526 ARG527 GLN528 ALA529 GLU530 ILE531 ARG532 LYS533 GLU534 CYS535 LEU536 ARG537 LEU538 TRP539 GLY540 ILE541 PRO542 ASP543 GLN544 ALA545 ARG546 VAL547
Nucleic acids
Unit 3 G1 A2 U3 C4
Unit 4 G1 A2 U3 C4
Ligands
Unit 5 SAM601
Unit 6 SAM601
Unit 7 MGT101
Unit 8 MGT101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany