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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/NTS COMPLEX WITH AF40431
Keywords PRONGF, ALZHEIMER'S DISEASE, BETA-PROPELLER, ASP-BOX REPEAT, DOMAIN, 10CC DOMAIN, RECEPTOR SORTING, PEPTIDE BINDING, PRO BINDING, MEMBRANE, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4MSL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SORTILIN  A 654 5143 0
2  Ligand    B 4 0 50
3  Ligand    C 3 0 39
4  Ligand   SORTILIN  A 2 0 36
5 Water     67 0 67
total       730 5143 192
Proteins
Unit 1 CYS53 GLY54 ARG55 VAL56 ARG57 ASP58 PHE59 VAL60 ALA61 LYS62 LEU63 ALA64 ASN65 ASN66 THR67 HIS68 GLN69 HIS70 VAL71 PHE72 ASP73 ASP74 LEU75 ARG76 GLY77 SER78 VAL79 SER80 LEU81 SER82 TRP83 VAL84 GLY85 ASP86 SER87 THR88 GLY89 VAL90 ILE91 LEU92 VAL93 LEU94 THR95 THR96 PHE97 HIS98 VAL99 GLY107 GLN108 SER109 LYS110 LEU111 TYR112 ARG113 SER114 GLU115 ASP116 TYR117 GLY118 LYS119 ASN120 PHE121 LYS122 ASP123 ILE124 THR125 ASP126 LEU127 ILE128 ASN129 ASN130 THR131 PHE132 ILE133 ARG134 THR135 GLU136 PHE137 GLY138 MET139 ALA140 ILE141 GLY142 PRO143 GLU144 ASN145 SER146 GLY147 LYS148 VAL149 VAL150 LEU151 THR152 ALA153 GLU154 VAL155 SER156 GLY157 GLY158 SER159 ARG160 GLY161 GLY162 ARG163 ILE164 PHE165 ARG166 SER167 SER168 ASP169 PHE170 ALA171 LYS172 ASN173 PHE174 VAL175 GLN176 THR177 ASP178 LEU179 PRO180 PHE181 HIS182 PRO183 LEU184 THR185 GLN186 MET187 MET188 TYR189 SER190 PRO191 GLN192 ASN193 SER194 ASP195 TYR196 LEU197 LEU198 ALA199 LEU200 SER201 THR202 GLU203 ASN204 GLY205 LEU206 TRP207 VAL208 SER209 LYS210 ASN211 PHE212 GLY213 GLY214 LYS215 TRP216 GLU217 GLU218 ILE219 HIS220 LYS221 ALA222 VAL223 CYS224 LEU225 ALA226 LYS227 TRP228 GLY229 SER230 ASP231 ASN232 THR233 ILE234 PHE235 PHE236 THR237 THR238 TYR239 ALA240 ASN241 GLY242 SER243 CYS244 LYS245 ALA246 ASP247 LEU248 GLY249 ALA250 LEU251 GLU252 LEU253 TRP254 ARG255 THR256 SER257 ASP258 LEU259 GLY260 LYS261 SER262 PHE263 LYS264 THR265 ILE266 GLY267 VAL268 LYS269 ILE270 TYR271 SER272 PHE273 GLY274 LEU275 GLY276 GLY277 ARG278 PHE279 LEU280 PHE281 ALA282 SER283 VAL284 MET285 ALA286 ASP287 LYS288 ASP289 THR290 THR291 ARG292 ARG293 ILE294 HIS295 VAL296 SER297 THR298 ASP299 GLN300 GLY301 ASP302 THR303 TRP304 SER305 MET306 ALA307 GLN308 LEU309 PRO310 SER311 VAL312 GLY313 GLN314 GLU315 GLN316 PHE317 TYR318 SER319 ILE320 LEU321 ALA322 ALA323 ASN324 ASP325 ASP326 MET327 VAL328 PHE329 MET330 HIS331 VAL332 ASP333 GLU334 PRO335 GLY336 ASP337 THR338 GLY339 PHE340 GLY341 THR342 ILE343 PHE344 THR345 SER346 ASP347 ASP348 ARG349 GLY350 ILE351 VAL352 TYR353 SER354 LYS355 SER356 LEU357 ASP358 ARG359 HIS360 LEU361 TYR362 THR363 THR364 THR365 GLY366 GLY367 GLU368 THR369 ASP370 PHE371 THR372 ASN373 VAL374 THR375 SER376 LEU377 ARG378 GLY379 VAL380 TYR381 ILE382 THR383 SER384 VAL385 LEU386 SER387 GLU388 ASP389 ASN390 SER391 ILE392 GLN393 THR394 MET395 ILE396 THR397 PHE398 ASP399 GLN400 GLY401 GLY402 ARG403 TRP404 THR405 HIS406 LEU407 ARG408 LYS409 PRO410 GLU411 ASN412 SER413 GLU414 CYS415 ASP416 ALA417 THR418 ALA419 LYS420 ASN421 LYS422 ASN423 GLU424 CYS425 SER426 LEU427 HIS428 ILE429 HIS430 ALA431 SER432 TYR433 SER434 ILE435 SER436 GLN437 LYS438 LEU439 ASN440 VAL441 PRO442 MET443 ALA444 PRO445 LEU446 SER447 GLU448 PRO449 ASN450 ALA451 VAL452 GLY453 ILE454 VAL455 ILE456 ALA457 HIS458 GLY459 SER460 VAL461 GLY462 ASP463 ALA464 ILE465 SER466 VAL467 MET468 VAL469 PRO470 ASP471 VAL472 TYR473 ILE474 SER475 ASP476 ASP477 GLY478 GLY479 TYR480 SER481 TRP482 THR483 LYS484 MET485 LEU486 GLU487 GLY488 PRO489 HIS490 TYR491 TYR492 THR493 ILE494 LEU495 ASP496 SER497 GLY498 GLY499 ILE500 ILE501 VAL502 ALA503 ILE504 GLU505 HIS506 SER507 SER508 ARG509 PRO510 ILE511 ASN512 VAL513 ILE514 LYS515 PHE516 SER517 THR518 ASP519 GLU520 GLY521 GLN522 CYS523 TRP524 GLN525 THR526 TYR527 THR528 PHE529 THR530 ARG531 ASP532 PRO533 ILE534 TYR535 PHE536 THR537 GLY538 LEU539 ALA540 SER541 GLU542 PRO543 GLY544 ALA545 ARG546 SER547 MET548 ASN549 ILE550 SER551 ILE552 TRP553 GLY554 PHE555 THR556 GLU557 SER558 THR561 SER562 GLN563 TRP564 VAL565 SER566 TYR567 THR568 ILE569 ASP570 PHE571 LYS572 ASP573 ILE574 LEU575 GLU576 ARG577 ASN578 CYS579 GLU580 GLU581 LYS582 ASP583 TYR584 THR585 ILE586 TRP587 LEU588 ALA589 HIS590 SER591 THR592 ASP593 PRO594 GLU595 ASP596 TYR597 GLU598 ASP599 GLY600 CYS601 ILE602 LEU603 GLY604 TYR605 LYS606 GLU607 GLN608 PHE609 LEU610 ARG611 LEU612 ARG613 LYS614 SER615 SER616 MET617 CYS618 GLN619 ASN620 GLY621 ARG622 ASP623 TYR624 VAL625 VAL626 THR627 LYS628 GLN629 PRO630 SER631 ILE632 CYS633 LEU634 CYS635 SER636 LEU637 GLU638 ASP639 PHE640 LEU641 CYS642 ASP643 PHE644 GLY645 TYR646 TYR647 ARG648 PRO649 GLU650 ASN651 ASP652 SER653 LYS654 CYS655 VAL656 GLU657 GLN658 PRO659 GLU660 LEU661 LYS662 GLY663 HIS664 ASP665 LEU666 GLU667 PHE668 CYS669 LEU670 TYR671 GLY672 ARG673 GLU674 GLU675 HIS676 LEU677 THR678 THR679 ASN680 GLY681 TYR682 ARG683 LYS684 ILE685 PRO686 GLY687 ASP688 LYS689 CYS690 GLN691 GLY692 GLY693 VAL694 ASN695 PRO696 VAL697 ARG698 GLU699 VAL700 LYS701 ASP702 LEU703 LYS704 LYS705 LYS706 CYS707 THR708 SER709 ASN710 PHE711 LEU712 SER713 PRO714 GLU715
Ligands
Unit 2 NAG1 NAG2 BMA3 MAN4
Unit 3 NAG1 NAG2 BMA3
Unit 4 PG4808 2ET809
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany